Experiment: nitrogen source nitrate 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS21850 and ABZR87_RS21855 are separated by 97 nucleotides ABZR87_RS21855 and ABZR87_RS21860 are separated by 28 nucleotides
ABZR87_RS21850: ABZR87_RS21850 - LysR substrate-binding domain-containing protein, at 1,282,099 to 1,282,953
_RS21850
ABZR87_RS21855: ABZR87_RS21855 - hypothetical protein, at 1,283,051 to 1,283,359
_RS21855
ABZR87_RS21860: ABZR87_RS21860 - beta-ketoacyl-ACP synthase III, at 1,283,388 to 1,284,509
_RS21860
Position (kb)
1283
1284 Strain fitness (log2 ratio)
-1
0
1 at 1282.744 kb on - strand, within ABZR87_RS21850 at 1283.019 kb on + strand at 1283.019 kb on + strand at 1283.019 kb on + strand at 1283.020 kb on - strand at 1283.020 kb on - strand at 1283.020 kb on - strand at 1283.145 kb on + strand, within ABZR87_RS21855 at 1283.145 kb on + strand, within ABZR87_RS21855 at 1283.145 kb on + strand, within ABZR87_RS21855 at 1283.146 kb on - strand, within ABZR87_RS21855 at 1283.146 kb on - strand, within ABZR87_RS21855 at 1283.146 kb on - strand, within ABZR87_RS21855 at 1283.146 kb on - strand, within ABZR87_RS21855 at 1283.146 kb on - strand, within ABZR87_RS21855 at 1283.146 kb on - strand, within ABZR87_RS21855 at 1283.207 kb on + strand, within ABZR87_RS21855 at 1283.207 kb on + strand, within ABZR87_RS21855 at 1283.208 kb on - strand, within ABZR87_RS21855 at 1283.390 kb on - strand at 1283.390 kb on - strand at 1283.782 kb on + strand, within ABZR87_RS21860 at 1284.307 kb on + strand, within ABZR87_RS21860 at 1284.307 kb on + strand, within ABZR87_RS21860 at 1284.307 kb on + strand, within ABZR87_RS21860 at 1284.308 kb on - strand, within ABZR87_RS21860 at 1284.308 kb on - strand, within ABZR87_RS21860
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrate 20mM remove 1,282,744 - ABZR87_RS21850 0.75 +1.4 1,283,019 + +0.3 1,283,019 + -0.7 1,283,019 + +0.7 1,283,020 - -0.7 1,283,020 - +0.3 1,283,020 - +1.6 1,283,145 + ABZR87_RS21855 0.30 +0.3 1,283,145 + ABZR87_RS21855 0.30 +1.3 1,283,145 + ABZR87_RS21855 0.30 -0.1 1,283,146 - ABZR87_RS21855 0.31 +0.9 1,283,146 - ABZR87_RS21855 0.31 +1.3 1,283,146 - ABZR87_RS21855 0.31 +0.4 1,283,146 - ABZR87_RS21855 0.31 +1.0 1,283,146 - ABZR87_RS21855 0.31 +0.3 1,283,146 - ABZR87_RS21855 0.31 +1.3 1,283,207 + ABZR87_RS21855 0.50 -0.6 1,283,207 + ABZR87_RS21855 0.50 +0.5 1,283,208 - ABZR87_RS21855 0.51 +0.3 1,283,390 - +0.4 1,283,390 - +0.8 1,283,782 + ABZR87_RS21860 0.35 -0.2 1,284,307 + ABZR87_RS21860 0.82 +0.9 1,284,307 + ABZR87_RS21860 0.82 +1.1 1,284,307 + ABZR87_RS21860 0.82 -0.2 1,284,308 - ABZR87_RS21860 0.82 -0.4 1,284,308 - ABZR87_RS21860 0.82 +0.2
Or see this region's nucleotide sequence