Experiment: nitrogen source nitrate 20mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17110 and ABZR87_RS17115 are separated by 125 nucleotides ABZR87_RS17115 and ABZR87_RS17120 are separated by 97 nucleotides ABZR87_RS17120 and ABZR87_RS17125 are separated by 224 nucleotides
ABZR87_RS17110: ABZR87_RS17110 - glycosyltransferase family 90 protein, at 184,851 to 185,711
_RS17110
ABZR87_RS17115: ABZR87_RS17115 - phytanoyl-CoA dioxygenase family protein, at 185,837 to 186,628
_RS17115
ABZR87_RS17120: ABZR87_RS17120 - hypothetical protein, at 186,726 to 186,947
_RS17120
ABZR87_RS17125: ABZR87_RS17125 - DUF2141 domain-containing protein, at 187,172 to 187,612
_RS17125
Position (kb) 185
186
187 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 184.879 kb on - strand at 184.882 kb on - strand at 184.882 kb on - strand at 184.882 kb on - strand at 184.955 kb on + strand, within ABZR87_RS17110 at 184.956 kb on - strand, within ABZR87_RS17110 at 184.998 kb on + strand, within ABZR87_RS17110 at 184.998 kb on + strand, within ABZR87_RS17110 at 185.004 kb on + strand, within ABZR87_RS17110 at 185.004 kb on + strand, within ABZR87_RS17110 at 185.005 kb on - strand, within ABZR87_RS17110 at 185.005 kb on - strand, within ABZR87_RS17110 at 185.028 kb on + strand, within ABZR87_RS17110 at 185.028 kb on + strand, within ABZR87_RS17110 at 185.085 kb on - strand, within ABZR87_RS17110 at 185.133 kb on - strand, within ABZR87_RS17110 at 185.133 kb on - strand, within ABZR87_RS17110 at 185.133 kb on - strand, within ABZR87_RS17110 at 185.511 kb on + strand, within ABZR87_RS17110 at 185.512 kb on - strand, within ABZR87_RS17110 at 185.676 kb on + strand at 185.676 kb on + strand at 185.677 kb on - strand at 185.677 kb on - strand at 185.677 kb on - strand at 185.709 kb on + strand at 185.762 kb on + strand at 185.762 kb on + strand at 185.763 kb on - strand at 185.782 kb on + strand at 185.795 kb on + strand at 185.796 kb on - strand at 185.822 kb on + strand at 185.822 kb on + strand at 185.822 kb on + strand at 185.823 kb on - strand at 185.916 kb on - strand at 185.916 kb on - strand at 186.113 kb on + strand, within ABZR87_RS17115 at 186.113 kb on + strand, within ABZR87_RS17115 at 186.113 kb on + strand, within ABZR87_RS17115 at 186.142 kb on - strand, within ABZR87_RS17115 at 186.263 kb on + strand, within ABZR87_RS17115 at 186.350 kb on - strand, within ABZR87_RS17115 at 186.442 kb on + strand, within ABZR87_RS17115 at 186.553 kb on + strand at 186.554 kb on - strand at 186.557 kb on + strand at 186.557 kb on + strand at 186.557 kb on + strand at 186.557 kb on + strand at 186.558 kb on - strand at 186.560 kb on + strand at 186.560 kb on + strand at 186.560 kb on + strand at 186.560 kb on + strand at 186.561 kb on - strand at 186.561 kb on - strand at 186.649 kb on + strand at 186.649 kb on + strand at 186.649 kb on + strand at 186.649 kb on + strand at 186.649 kb on - strand at 186.650 kb on - strand at 186.650 kb on - strand at 186.650 kb on - strand at 186.688 kb on + strand at 186.688 kb on + strand at 186.688 kb on + strand at 186.689 kb on - strand at 186.689 kb on - strand at 186.689 kb on - strand at 186.689 kb on - strand at 186.945 kb on + strand at 186.945 kb on + strand at 186.945 kb on + strand at 186.945 kb on + strand at 186.945 kb on + strand at 186.946 kb on - strand at 186.946 kb on - strand at 187.115 kb on + strand at 187.115 kb on + strand at 187.115 kb on + strand at 187.116 kb on - strand at 187.116 kb on - strand at 187.116 kb on - strand at 187.116 kb on - strand at 187.116 kb on - strand at 187.206 kb on + strand at 187.407 kb on - strand, within ABZR87_RS17125 at 187.430 kb on + strand, within ABZR87_RS17125 at 187.508 kb on + strand, within ABZR87_RS17125
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrate 20mM remove 184,879 - +0.7 184,882 - +0.5 184,882 - +1.1 184,882 - -1.2 184,955 + ABZR87_RS17110 0.12 -0.4 184,956 - ABZR87_RS17110 0.12 +0.2 184,998 + ABZR87_RS17110 0.17 +0.8 184,998 + ABZR87_RS17110 0.17 -0.2 185,004 + ABZR87_RS17110 0.18 -0.6 185,004 + ABZR87_RS17110 0.18 +0.9 185,005 - ABZR87_RS17110 0.18 +0.1 185,005 - ABZR87_RS17110 0.18 +0.3 185,028 + ABZR87_RS17110 0.21 -0.9 185,028 + ABZR87_RS17110 0.21 +0.0 185,085 - ABZR87_RS17110 0.27 +0.2 185,133 - ABZR87_RS17110 0.33 -0.3 185,133 - ABZR87_RS17110 0.33 +0.6 185,133 - ABZR87_RS17110 0.33 +1.5 185,511 + ABZR87_RS17110 0.77 -0.0 185,512 - ABZR87_RS17110 0.77 -0.2 185,676 + +1.4 185,676 + +0.4 185,677 - +1.0 185,677 - -0.1 185,677 - -3.0 185,709 + -0.7 185,762 + +0.6 185,762 + -0.1 185,763 - -0.9 185,782 + +1.4 185,795 + +0.3 185,796 - -0.2 185,822 + -0.1 185,822 + -0.4 185,822 + +0.1 185,823 - -0.3 185,916 - +0.3 185,916 - +1.5 186,113 + ABZR87_RS17115 0.35 +1.2 186,113 + ABZR87_RS17115 0.35 +1.1 186,113 + ABZR87_RS17115 0.35 +0.4 186,142 - ABZR87_RS17115 0.39 -1.8 186,263 + ABZR87_RS17115 0.54 +0.7 186,350 - ABZR87_RS17115 0.65 +0.2 186,442 + ABZR87_RS17115 0.76 -0.0 186,553 + +1.0 186,554 - +0.8 186,557 + +0.5 186,557 + +0.0 186,557 + -0.7 186,557 + +0.4 186,558 - +0.4 186,560 + -0.3 186,560 + -0.3 186,560 + +0.3 186,560 + -0.1 186,561 - -0.5 186,561 - +1.4 186,649 + -0.3 186,649 + -1.3 186,649 + +0.1 186,649 + +0.9 186,649 - -0.9 186,650 - -0.4 186,650 - +0.4 186,650 - +0.9 186,688 + -1.2 186,688 + -0.1 186,688 + +1.2 186,689 - +0.8 186,689 - -0.2 186,689 - -0.2 186,689 - +0.3 186,945 + -0.1 186,945 + +0.6 186,945 + +0.5 186,945 + -0.4 186,945 + -1.2 186,946 - -2.1 186,946 - +0.3 187,115 + +0.4 187,115 + +1.2 187,115 + -0.0 187,116 - -0.3 187,116 - +0.1 187,116 - -0.5 187,116 - +1.1 187,116 - +0.1 187,206 + -0.1 187,407 - ABZR87_RS17125 0.53 +0.3 187,430 + ABZR87_RS17125 0.59 -0.6 187,508 + ABZR87_RS17125 0.76 +0.2
Or see this region's nucleotide sequence