Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06455

Experiment: nitrogen source nitrate 20mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS06450 and ABZR87_RS06455 are separated by 9 nucleotidesABZR87_RS06455 and ABZR87_RS06460 are separated by 104 nucleotides ABZR87_RS06450: ABZR87_RS06450 - fumarylacetoacetate hydrolase family protein, at 1,373,747 to 1,374,739 _RS06450 ABZR87_RS06455: ABZR87_RS06455 - IclR family transcriptional regulator, at 1,374,749 to 1,375,657 _RS06455 ABZR87_RS06460: ABZR87_RS06460 - LLM class flavin-dependent oxidoreductase, at 1,375,762 to 1,376,766 _RS06460 Position (kb) 1374 1375 1376Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1373.903 kb on + strand, within ABZR87_RS06450at 1373.904 kb on - strand, within ABZR87_RS06450at 1373.904 kb on - strand, within ABZR87_RS06450at 1373.984 kb on + strand, within ABZR87_RS06450at 1374.008 kb on + strand, within ABZR87_RS06450at 1374.009 kb on - strand, within ABZR87_RS06450at 1374.009 kb on - strand, within ABZR87_RS06450at 1374.009 kb on - strand, within ABZR87_RS06450at 1374.009 kb on - strand, within ABZR87_RS06450at 1374.009 kb on - strand, within ABZR87_RS06450at 1374.086 kb on + strand, within ABZR87_RS06450at 1374.086 kb on + strand, within ABZR87_RS06450at 1374.086 kb on + strand, within ABZR87_RS06450at 1374.086 kb on + strand, within ABZR87_RS06450at 1374.086 kb on + strand, within ABZR87_RS06450at 1374.086 kb on + strand, within ABZR87_RS06450at 1374.086 kb on + strand, within ABZR87_RS06450at 1374.086 kb on + strand, within ABZR87_RS06450at 1374.087 kb on - strand, within ABZR87_RS06450at 1374.087 kb on - strand, within ABZR87_RS06450at 1374.087 kb on - strand, within ABZR87_RS06450at 1374.087 kb on - strand, within ABZR87_RS06450at 1374.087 kb on - strand, within ABZR87_RS06450at 1374.087 kb on - strand, within ABZR87_RS06450at 1374.087 kb on - strand, within ABZR87_RS06450at 1374.087 kb on - strand, within ABZR87_RS06450at 1374.087 kb on - strand, within ABZR87_RS06450at 1374.490 kb on + strand, within ABZR87_RS06450at 1374.490 kb on + strand, within ABZR87_RS06450at 1374.490 kb on + strand, within ABZR87_RS06450at 1374.491 kb on - strand, within ABZR87_RS06450at 1374.491 kb on - strand, within ABZR87_RS06450at 1374.491 kb on - strand, within ABZR87_RS06450at 1374.491 kb on - strand, within ABZR87_RS06450at 1374.569 kb on + strand, within ABZR87_RS06450at 1374.632 kb on + strand, within ABZR87_RS06450at 1374.632 kb on + strand, within ABZR87_RS06450at 1374.632 kb on + strand, within ABZR87_RS06450at 1374.632 kb on + strand, within ABZR87_RS06450at 1374.632 kb on + strand, within ABZR87_RS06450at 1374.632 kb on + strand, within ABZR87_RS06450at 1374.632 kb on + strand, within ABZR87_RS06450at 1374.632 kb on + strand, within ABZR87_RS06450at 1374.632 kb on + strand, within ABZR87_RS06450at 1374.633 kb on - strand, within ABZR87_RS06450at 1374.633 kb on - strand, within ABZR87_RS06450at 1374.633 kb on - strand, within ABZR87_RS06450at 1374.633 kb on - strand, within ABZR87_RS06450at 1374.642 kb on - strandat 1374.642 kb on - strandat 1374.737 kb on + strandat 1374.738 kb on - strandat 1374.738 kb on - strandat 1374.751 kb on - strandat 1374.829 kb on - strandat 1374.845 kb on + strand, within ABZR87_RS06455at 1374.846 kb on - strand, within ABZR87_RS06455at 1375.453 kb on - strand, within ABZR87_RS06455at 1375.682 kb on + strandat 1375.694 kb on + strandat 1375.698 kb on + strandat 1375.699 kb on - strandat 1375.796 kb on - strandat 1375.828 kb on + strandat 1375.828 kb on + strandat 1375.828 kb on + strandat 1375.829 kb on - strandat 1375.829 kb on - strandat 1375.829 kb on - strandat 1375.874 kb on - strand, within ABZR87_RS06460at 1376.035 kb on + strand, within ABZR87_RS06460at 1376.035 kb on + strand, within ABZR87_RS06460at 1376.035 kb on + strand, within ABZR87_RS06460at 1376.035 kb on + strand, within ABZR87_RS06460at 1376.035 kb on + strand, within ABZR87_RS06460at 1376.035 kb on + strand, within ABZR87_RS06460at 1376.035 kb on + strand, within ABZR87_RS06460at 1376.035 kb on + strand, within ABZR87_RS06460at 1376.035 kb on + strand, within ABZR87_RS06460at 1376.035 kb on + strand, within ABZR87_RS06460at 1376.036 kb on - strand, within ABZR87_RS06460at 1376.036 kb on - strand, within ABZR87_RS06460at 1376.036 kb on - strand, within ABZR87_RS06460at 1376.036 kb on - strand, within ABZR87_RS06460at 1376.036 kb on - strand, within ABZR87_RS06460at 1376.036 kb on - strand, within ABZR87_RS06460at 1376.036 kb on - strand, within ABZR87_RS06460at 1376.036 kb on - strand, within ABZR87_RS06460at 1376.036 kb on - strand, within ABZR87_RS06460at 1376.036 kb on - strand, within ABZR87_RS06460at 1376.116 kb on + strand, within ABZR87_RS06460at 1376.116 kb on + strand, within ABZR87_RS06460at 1376.116 kb on + strand, within ABZR87_RS06460at 1376.117 kb on - strand, within ABZR87_RS06460at 1376.305 kb on + strand, within ABZR87_RS06460at 1376.305 kb on + strand, within ABZR87_RS06460at 1376.306 kb on - strand, within ABZR87_RS06460at 1376.347 kb on + strand, within ABZR87_RS06460at 1376.348 kb on - strand, within ABZR87_RS06460at 1376.395 kb on + strand, within ABZR87_RS06460at 1376.396 kb on - strand, within ABZR87_RS06460at 1376.396 kb on - strand, within ABZR87_RS06460at 1376.521 kb on + strand, within ABZR87_RS06460at 1376.521 kb on + strand, within ABZR87_RS06460at 1376.521 kb on + strand, within ABZR87_RS06460at 1376.521 kb on + strand, within ABZR87_RS06460at 1376.521 kb on + strand, within ABZR87_RS06460at 1376.521 kb on + strand, within ABZR87_RS06460at 1376.521 kb on + strand, within ABZR87_RS06460at 1376.521 kb on + strand, within ABZR87_RS06460at 1376.522 kb on - strand, within ABZR87_RS06460at 1376.522 kb on - strand, within ABZR87_RS06460at 1376.522 kb on - strand, within ABZR87_RS06460at 1376.522 kb on - strand, within ABZR87_RS06460at 1376.522 kb on - strand, within ABZR87_RS06460at 1376.522 kb on - strand, within ABZR87_RS06460at 1376.522 kb on - strand, within ABZR87_RS06460at 1376.539 kb on + strand, within ABZR87_RS06460at 1376.539 kb on + strand, within ABZR87_RS06460at 1376.539 kb on + strand, within ABZR87_RS06460at 1376.539 kb on + strand, within ABZR87_RS06460at 1376.540 kb on - strand, within ABZR87_RS06460at 1376.557 kb on + strand, within ABZR87_RS06460at 1376.558 kb on - strand, within ABZR87_RS06460at 1376.558 kb on - strand, within ABZR87_RS06460

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrate 20mM
remove
1,373,903 + ABZR87_RS06450 0.16 +0.8
1,373,904 - ABZR87_RS06450 0.16 -0.6
1,373,904 - ABZR87_RS06450 0.16 +0.7
1,373,984 + ABZR87_RS06450 0.24 +1.1
1,374,008 + ABZR87_RS06450 0.26 -1.4
1,374,009 - ABZR87_RS06450 0.26 -0.0
1,374,009 - ABZR87_RS06450 0.26 +0.3
1,374,009 - ABZR87_RS06450 0.26 -0.1
1,374,009 - ABZR87_RS06450 0.26 +0.6
1,374,009 - ABZR87_RS06450 0.26 -0.6
1,374,086 + ABZR87_RS06450 0.34 +1.2
1,374,086 + ABZR87_RS06450 0.34 +0.1
1,374,086 + ABZR87_RS06450 0.34 -1.3
1,374,086 + ABZR87_RS06450 0.34 +0.4
1,374,086 + ABZR87_RS06450 0.34 -0.8
1,374,086 + ABZR87_RS06450 0.34 +0.2
1,374,086 + ABZR87_RS06450 0.34 +0.8
1,374,086 + ABZR87_RS06450 0.34 -0.7
1,374,087 - ABZR87_RS06450 0.34 +4.6
1,374,087 - ABZR87_RS06450 0.34 +0.1
1,374,087 - ABZR87_RS06450 0.34 +0.6
1,374,087 - ABZR87_RS06450 0.34 +0.4
1,374,087 - ABZR87_RS06450 0.34 -1.0
1,374,087 - ABZR87_RS06450 0.34 -0.8
1,374,087 - ABZR87_RS06450 0.34 -1.8
1,374,087 - ABZR87_RS06450 0.34 +0.7
1,374,087 - ABZR87_RS06450 0.34 +0.6
1,374,490 + ABZR87_RS06450 0.75 +0.1
1,374,490 + ABZR87_RS06450 0.75 -0.3
1,374,490 + ABZR87_RS06450 0.75 +1.0
1,374,491 - ABZR87_RS06450 0.75 -0.3
1,374,491 - ABZR87_RS06450 0.75 -0.4
1,374,491 - ABZR87_RS06450 0.75 -0.9
1,374,491 - ABZR87_RS06450 0.75 +0.4
1,374,569 + ABZR87_RS06450 0.83 +0.0
1,374,632 + ABZR87_RS06450 0.89 +0.3
1,374,632 + ABZR87_RS06450 0.89 -0.1
1,374,632 + ABZR87_RS06450 0.89 -0.3
1,374,632 + ABZR87_RS06450 0.89 +1.4
1,374,632 + ABZR87_RS06450 0.89 +0.9
1,374,632 + ABZR87_RS06450 0.89 -0.3
1,374,632 + ABZR87_RS06450 0.89 -0.9
1,374,632 + ABZR87_RS06450 0.89 +0.6
1,374,632 + ABZR87_RS06450 0.89 +0.3
1,374,633 - ABZR87_RS06450 0.89 -0.8
1,374,633 - ABZR87_RS06450 0.89 +0.8
1,374,633 - ABZR87_RS06450 0.89 -0.1
1,374,633 - ABZR87_RS06450 0.89 +1.0
1,374,642 - +0.3
1,374,642 - -0.8
1,374,737 + +0.1
1,374,738 - +0.9
1,374,738 - -1.6
1,374,751 - -0.0
1,374,829 - -1.2
1,374,845 + ABZR87_RS06455 0.11 -0.2
1,374,846 - ABZR87_RS06455 0.11 +1.2
1,375,453 - ABZR87_RS06455 0.77 +2.1
1,375,682 + +0.7
1,375,694 + +0.1
1,375,698 + +1.3
1,375,699 - -0.4
1,375,796 - +0.2
1,375,828 + +0.2
1,375,828 + -0.6
1,375,828 + -1.0
1,375,829 - -1.4
1,375,829 - -0.1
1,375,829 - +0.2
1,375,874 - ABZR87_RS06460 0.11 -0.2
1,376,035 + ABZR87_RS06460 0.27 +0.0
1,376,035 + ABZR87_RS06460 0.27 -0.1
1,376,035 + ABZR87_RS06460 0.27 +1.2
1,376,035 + ABZR87_RS06460 0.27 +0.2
1,376,035 + ABZR87_RS06460 0.27 -0.1
1,376,035 + ABZR87_RS06460 0.27 +1.2
1,376,035 + ABZR87_RS06460 0.27 +0.2
1,376,035 + ABZR87_RS06460 0.27 +1.6
1,376,035 + ABZR87_RS06460 0.27 +0.6
1,376,035 + ABZR87_RS06460 0.27 -0.4
1,376,036 - ABZR87_RS06460 0.27 -0.1
1,376,036 - ABZR87_RS06460 0.27 +0.4
1,376,036 - ABZR87_RS06460 0.27 +0.1
1,376,036 - ABZR87_RS06460 0.27 -0.0
1,376,036 - ABZR87_RS06460 0.27 +0.8
1,376,036 - ABZR87_RS06460 0.27 +0.0
1,376,036 - ABZR87_RS06460 0.27 +0.2
1,376,036 - ABZR87_RS06460 0.27 +0.1
1,376,036 - ABZR87_RS06460 0.27 -0.3
1,376,036 - ABZR87_RS06460 0.27 -1.3
1,376,116 + ABZR87_RS06460 0.35 +0.6
1,376,116 + ABZR87_RS06460 0.35 -0.5
1,376,116 + ABZR87_RS06460 0.35 -0.6
1,376,117 - ABZR87_RS06460 0.35 -1.4
1,376,305 + ABZR87_RS06460 0.54 +1.2
1,376,305 + ABZR87_RS06460 0.54 +0.2
1,376,306 - ABZR87_RS06460 0.54 -0.3
1,376,347 + ABZR87_RS06460 0.58 -0.5
1,376,348 - ABZR87_RS06460 0.58 +1.3
1,376,395 + ABZR87_RS06460 0.63 -0.9
1,376,396 - ABZR87_RS06460 0.63 -0.0
1,376,396 - ABZR87_RS06460 0.63 +0.8
1,376,521 + ABZR87_RS06460 0.76 +0.3
1,376,521 + ABZR87_RS06460 0.76 +0.1
1,376,521 + ABZR87_RS06460 0.76 -1.4
1,376,521 + ABZR87_RS06460 0.76 +0.5
1,376,521 + ABZR87_RS06460 0.76 +0.6
1,376,521 + ABZR87_RS06460 0.76 -2.6
1,376,521 + ABZR87_RS06460 0.76 -0.2
1,376,521 + ABZR87_RS06460 0.76 -0.0
1,376,522 - ABZR87_RS06460 0.76 -0.1
1,376,522 - ABZR87_RS06460 0.76 +0.2
1,376,522 - ABZR87_RS06460 0.76 -0.3
1,376,522 - ABZR87_RS06460 0.76 -0.1
1,376,522 - ABZR87_RS06460 0.76 -0.1
1,376,522 - ABZR87_RS06460 0.76 +0.1
1,376,522 - ABZR87_RS06460 0.76 +0.4
1,376,539 + ABZR87_RS06460 0.77 -0.6
1,376,539 + ABZR87_RS06460 0.77 +0.1
1,376,539 + ABZR87_RS06460 0.77 -0.8
1,376,539 + ABZR87_RS06460 0.77 -1.6
1,376,540 - ABZR87_RS06460 0.77 +1.1
1,376,557 + ABZR87_RS06460 0.79 +0.3
1,376,558 - ABZR87_RS06460 0.79 -1.4
1,376,558 - ABZR87_RS06460 0.79 -0.2

Or see this region's nucleotide sequence