Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS05260

Experiment: nitrogen source nitrate 20mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS05250 and ABZR87_RS05255 overlap by 4 nucleotidesABZR87_RS05255 and ABZR87_RS05260 are separated by 61 nucleotidesABZR87_RS05260 and ABZR87_RS05265 are separated by 22 nucleotidesABZR87_RS05265 and ABZR87_RS05270 are separated by 69 nucleotides ABZR87_RS05250: ABZR87_RS05250 - 3-oxo-tetronate kinase, at 1,103,007 to 1,104,320 _RS05250 ABZR87_RS05255: ABZR87_RS05255 - aldolase, at 1,104,317 to 1,104,961 _RS05255 ABZR87_RS05260: ABZR87_RS05260 - MFS transporter, at 1,105,023 to 1,106,348 _RS05260 ABZR87_RS05265: ABZR87_RS05265 - 2-oxo-tetronate isomerase, at 1,106,371 to 1,107,159 _RS05265 ABZR87_RS05270: ABZR87_RS05270 - DUF3617 family protein, at 1,107,229 to 1,107,690 _RS05270 Position (kb) 1105 1106 1107Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1104.152 kb on - strand, within ABZR87_RS05250at 1104.152 kb on - strand, within ABZR87_RS05250at 1104.377 kb on + strandat 1104.377 kb on + strandat 1104.377 kb on + strandat 1104.377 kb on + strandat 1104.377 kb on + strandat 1104.377 kb on + strandat 1104.377 kb on + strandat 1104.378 kb on - strandat 1104.378 kb on - strandat 1104.378 kb on - strandat 1104.378 kb on - strandat 1104.378 kb on - strandat 1104.390 kb on - strand, within ABZR87_RS05255at 1104.502 kb on + strand, within ABZR87_RS05255at 1104.566 kb on + strand, within ABZR87_RS05255at 1104.566 kb on + strand, within ABZR87_RS05255at 1104.567 kb on - strand, within ABZR87_RS05255at 1104.681 kb on - strand, within ABZR87_RS05255at 1104.681 kb on - strand, within ABZR87_RS05255at 1104.681 kb on - strand, within ABZR87_RS05255at 1104.683 kb on + strand, within ABZR87_RS05255at 1104.683 kb on + strand, within ABZR87_RS05255at 1104.683 kb on + strand, within ABZR87_RS05255at 1104.683 kb on + strand, within ABZR87_RS05255at 1104.683 kb on + strand, within ABZR87_RS05255at 1104.683 kb on + strand, within ABZR87_RS05255at 1104.683 kb on + strand, within ABZR87_RS05255at 1104.683 kb on + strand, within ABZR87_RS05255at 1104.684 kb on - strand, within ABZR87_RS05255at 1104.684 kb on - strand, within ABZR87_RS05255at 1104.684 kb on - strand, within ABZR87_RS05255at 1104.684 kb on - strand, within ABZR87_RS05255at 1104.684 kb on - strand, within ABZR87_RS05255at 1104.684 kb on - strand, within ABZR87_RS05255at 1104.684 kb on - strand, within ABZR87_RS05255at 1104.684 kb on - strand, within ABZR87_RS05255at 1104.843 kb on - strand, within ABZR87_RS05255at 1105.001 kb on + strandat 1105.001 kb on + strandat 1105.001 kb on + strandat 1105.001 kb on + strandat 1105.001 kb on + strandat 1105.002 kb on - strandat 1105.002 kb on - strandat 1105.002 kb on - strandat 1105.008 kb on + strandat 1105.009 kb on - strandat 1105.089 kb on + strandat 1105.090 kb on - strandat 1105.090 kb on - strandat 1105.134 kb on + strandat 1105.134 kb on + strandat 1105.134 kb on + strandat 1105.134 kb on + strandat 1105.135 kb on - strandat 1105.218 kb on + strand, within ABZR87_RS05260at 1105.218 kb on + strand, within ABZR87_RS05260at 1105.219 kb on - strand, within ABZR87_RS05260at 1105.219 kb on - strand, within ABZR87_RS05260at 1105.219 kb on - strand, within ABZR87_RS05260at 1105.219 kb on - strand, within ABZR87_RS05260at 1105.219 kb on - strand, within ABZR87_RS05260at 1105.252 kb on - strand, within ABZR87_RS05260at 1105.252 kb on - strand, within ABZR87_RS05260at 1105.384 kb on - strand, within ABZR87_RS05260at 1105.384 kb on - strand, within ABZR87_RS05260at 1105.384 kb on - strand, within ABZR87_RS05260at 1105.384 kb on - strand, within ABZR87_RS05260at 1105.426 kb on - strand, within ABZR87_RS05260at 1105.426 kb on - strand, within ABZR87_RS05260at 1105.426 kb on - strand, within ABZR87_RS05260at 1105.444 kb on - strand, within ABZR87_RS05260at 1105.444 kb on - strand, within ABZR87_RS05260at 1105.452 kb on + strand, within ABZR87_RS05260at 1105.452 kb on + strand, within ABZR87_RS05260at 1105.452 kb on + strand, within ABZR87_RS05260at 1105.453 kb on - strand, within ABZR87_RS05260at 1105.453 kb on - strand, within ABZR87_RS05260at 1105.453 kb on - strand, within ABZR87_RS05260at 1105.458 kb on + strand, within ABZR87_RS05260at 1105.458 kb on + strand, within ABZR87_RS05260at 1105.612 kb on + strand, within ABZR87_RS05260at 1105.815 kb on + strand, within ABZR87_RS05260at 1105.815 kb on + strand, within ABZR87_RS05260at 1105.815 kb on + strand, within ABZR87_RS05260at 1105.815 kb on + strand, within ABZR87_RS05260at 1105.815 kb on + strand, within ABZR87_RS05260at 1105.816 kb on - strand, within ABZR87_RS05260at 1105.816 kb on - strand, within ABZR87_RS05260at 1105.816 kb on - strand, within ABZR87_RS05260at 1105.816 kb on - strand, within ABZR87_RS05260at 1105.816 kb on - strand, within ABZR87_RS05260at 1105.926 kb on + strand, within ABZR87_RS05260at 1105.926 kb on + strand, within ABZR87_RS05260at 1105.927 kb on - strand, within ABZR87_RS05260at 1105.927 kb on - strand, within ABZR87_RS05260at 1105.927 kb on - strand, within ABZR87_RS05260at 1105.927 kb on - strand, within ABZR87_RS05260at 1106.055 kb on - strand, within ABZR87_RS05260at 1106.062 kb on + strand, within ABZR87_RS05260at 1106.062 kb on + strand, within ABZR87_RS05260at 1106.062 kb on + strand, within ABZR87_RS05260at 1106.062 kb on + strand, within ABZR87_RS05260at 1106.062 kb on + strand, within ABZR87_RS05260at 1106.063 kb on - strand, within ABZR87_RS05260at 1106.063 kb on - strand, within ABZR87_RS05260at 1106.063 kb on - strand, within ABZR87_RS05260at 1106.063 kb on - strand, within ABZR87_RS05260at 1106.191 kb on - strand, within ABZR87_RS05260at 1106.223 kb on + strandat 1106.223 kb on + strandat 1106.223 kb on + strandat 1106.223 kb on + strandat 1106.223 kb on + strandat 1106.223 kb on + strandat 1106.223 kb on + strandat 1106.223 kb on + strandat 1106.223 kb on + strandat 1106.223 kb on + strandat 1106.223 kb on + strandat 1106.223 kb on + strandat 1106.223 kb on + strandat 1106.223 kb on + strandat 1106.223 kb on + strandat 1106.224 kb on - strandat 1106.224 kb on - strandat 1106.224 kb on - strandat 1106.224 kb on - strandat 1106.224 kb on - strandat 1106.224 kb on - strandat 1106.224 kb on - strandat 1106.224 kb on - strandat 1106.225 kb on + strandat 1106.225 kb on + strandat 1106.225 kb on + strandat 1106.225 kb on + strandat 1106.225 kb on + strandat 1106.225 kb on + strandat 1106.225 kb on + strandat 1106.225 kb on + strandat 1106.225 kb on + strandat 1106.225 kb on + strandat 1106.226 kb on - strandat 1106.226 kb on - strandat 1106.226 kb on - strandat 1106.226 kb on - strandat 1106.226 kb on - strandat 1106.226 kb on - strandat 1106.226 kb on - strandat 1106.226 kb on - strandat 1106.226 kb on - strandat 1106.274 kb on + strandat 1106.274 kb on + strandat 1106.274 kb on + strandat 1106.274 kb on + strandat 1106.274 kb on + strandat 1106.274 kb on + strandat 1106.274 kb on + strandat 1106.275 kb on - strandat 1106.275 kb on - strandat 1106.275 kb on - strandat 1106.275 kb on - strandat 1106.275 kb on - strandat 1106.275 kb on - strandat 1106.275 kb on - strandat 1106.275 kb on - strandat 1106.342 kb on + strandat 1106.342 kb on + strandat 1106.343 kb on - strandat 1106.343 kb on - strandat 1106.343 kb on - strandat 1106.346 kb on + strandat 1106.346 kb on + strandat 1106.346 kb on + strandat 1106.347 kb on - strandat 1106.347 kb on - strandat 1106.347 kb on - strandat 1106.347 kb on - strandat 1106.347 kb on - strandat 1106.347 kb on - strandat 1106.347 kb on - strandat 1106.347 kb on - strandat 1106.347 kb on - strandat 1106.347 kb on - strandat 1106.347 kb on - strandat 1106.347 kb on - strandat 1106.355 kb on + strandat 1106.355 kb on + strandat 1106.355 kb on + strandat 1106.355 kb on + strandat 1106.356 kb on - strandat 1106.356 kb on - strandat 1106.404 kb on + strandat 1106.404 kb on + strandat 1106.405 kb on - strandat 1106.405 kb on - strandat 1106.405 kb on - strandat 1106.483 kb on - strand, within ABZR87_RS05265at 1106.483 kb on - strand, within ABZR87_RS05265at 1106.483 kb on - strand, within ABZR87_RS05265at 1106.618 kb on + strand, within ABZR87_RS05265at 1106.696 kb on + strand, within ABZR87_RS05265at 1106.696 kb on + strand, within ABZR87_RS05265at 1106.734 kb on + strand, within ABZR87_RS05265at 1106.734 kb on + strand, within ABZR87_RS05265at 1106.734 kb on + strand, within ABZR87_RS05265at 1106.734 kb on + strand, within ABZR87_RS05265at 1106.734 kb on + strand, within ABZR87_RS05265at 1106.734 kb on + strand, within ABZR87_RS05265at 1106.735 kb on - strand, within ABZR87_RS05265at 1106.735 kb on - strand, within ABZR87_RS05265at 1106.735 kb on - strand, within ABZR87_RS05265at 1106.735 kb on - strand, within ABZR87_RS05265at 1106.735 kb on - strand, within ABZR87_RS05265at 1106.752 kb on + strand, within ABZR87_RS05265at 1106.908 kb on + strand, within ABZR87_RS05265at 1106.908 kb on + strand, within ABZR87_RS05265at 1106.956 kb on + strand, within ABZR87_RS05265at 1106.956 kb on + strand, within ABZR87_RS05265at 1106.956 kb on + strand, within ABZR87_RS05265at 1106.957 kb on - strand, within ABZR87_RS05265at 1106.957 kb on - strand, within ABZR87_RS05265at 1106.957 kb on - strand, within ABZR87_RS05265at 1106.957 kb on - strand, within ABZR87_RS05265at 1107.067 kb on + strand, within ABZR87_RS05265at 1107.068 kb on - strand, within ABZR87_RS05265at 1107.068 kb on - strand, within ABZR87_RS05265at 1107.092 kb on - strandat 1107.092 kb on - strandat 1107.230 kb on + strandat 1107.230 kb on + strandat 1107.230 kb on + strandat 1107.231 kb on - strandat 1107.231 kb on - strandat 1107.252 kb on - strandat 1107.263 kb on + strandat 1107.264 kb on - strandat 1107.264 kb on - strandat 1107.306 kb on - strand, within ABZR87_RS05270at 1107.306 kb on - strand, within ABZR87_RS05270at 1107.306 kb on - strand, within ABZR87_RS05270at 1107.306 kb on - strand, within ABZR87_RS05270at 1107.306 kb on - strand, within ABZR87_RS05270at 1107.330 kb on - strand, within ABZR87_RS05270at 1107.330 kb on - strand, within ABZR87_RS05270at 1107.330 kb on - strand, within ABZR87_RS05270at 1107.330 kb on - strand, within ABZR87_RS05270

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrate 20mM
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1,104,152 - ABZR87_RS05250 0.87 +0.1
1,104,152 - ABZR87_RS05250 0.87 +0.4
1,104,377 + -0.1
1,104,377 + +0.6
1,104,377 + -0.3
1,104,377 + -1.7
1,104,377 + +1.1
1,104,377 + +0.3
1,104,377 + +0.1
1,104,378 - +0.3
1,104,378 - +0.0
1,104,378 - +0.4
1,104,378 - +0.6
1,104,378 - -0.0
1,104,390 - ABZR87_RS05255 0.11 +0.1
1,104,502 + ABZR87_RS05255 0.29 -2.1
1,104,566 + ABZR87_RS05255 0.39 -0.0
1,104,566 + ABZR87_RS05255 0.39 +0.2
1,104,567 - ABZR87_RS05255 0.39 -0.6
1,104,681 - ABZR87_RS05255 0.56 -0.3
1,104,681 - ABZR87_RS05255 0.56 -2.5
1,104,681 - ABZR87_RS05255 0.56 -2.7
1,104,683 + ABZR87_RS05255 0.57 -1.3
1,104,683 + ABZR87_RS05255 0.57 +0.7
1,104,683 + ABZR87_RS05255 0.57 +1.2
1,104,683 + ABZR87_RS05255 0.57 +0.7
1,104,683 + ABZR87_RS05255 0.57 +0.6
1,104,683 + ABZR87_RS05255 0.57 +1.4
1,104,683 + ABZR87_RS05255 0.57 +0.2
1,104,683 + ABZR87_RS05255 0.57 -0.3
1,104,684 - ABZR87_RS05255 0.57 -1.2
1,104,684 - ABZR87_RS05255 0.57 +0.5
1,104,684 - ABZR87_RS05255 0.57 +0.6
1,104,684 - ABZR87_RS05255 0.57 +1.0
1,104,684 - ABZR87_RS05255 0.57 -2.0
1,104,684 - ABZR87_RS05255 0.57 -0.0
1,104,684 - ABZR87_RS05255 0.57 +0.4
1,104,684 - ABZR87_RS05255 0.57 +0.2
1,104,843 - ABZR87_RS05255 0.82 -0.0
1,105,001 + +2.4
1,105,001 + +0.3
1,105,001 + -0.2
1,105,001 + +0.1
1,105,001 + -0.5
1,105,002 - -0.1
1,105,002 - -0.3
1,105,002 - +1.7
1,105,008 + -0.5
1,105,009 - +0.1
1,105,089 + -2.5
1,105,090 - -0.9
1,105,090 - +0.5
1,105,134 + -0.7
1,105,134 + +1.3
1,105,134 + -0.2
1,105,134 + +0.1
1,105,135 - +2.0
1,105,218 + ABZR87_RS05260 0.15 +0.0
1,105,218 + ABZR87_RS05260 0.15 -0.1
1,105,219 - ABZR87_RS05260 0.15 +0.0
1,105,219 - ABZR87_RS05260 0.15 +1.5
1,105,219 - ABZR87_RS05260 0.15 -0.3
1,105,219 - ABZR87_RS05260 0.15 +0.5
1,105,219 - ABZR87_RS05260 0.15 +0.3
1,105,252 - ABZR87_RS05260 0.17 +0.1
1,105,252 - ABZR87_RS05260 0.17 +0.8
1,105,384 - ABZR87_RS05260 0.27 +0.2
1,105,384 - ABZR87_RS05260 0.27 +0.1
1,105,384 - ABZR87_RS05260 0.27 -0.6
1,105,384 - ABZR87_RS05260 0.27 -0.5
1,105,426 - ABZR87_RS05260 0.30 -0.0
1,105,426 - ABZR87_RS05260 0.30 -0.3
1,105,426 - ABZR87_RS05260 0.30 +0.5
1,105,444 - ABZR87_RS05260 0.32 -1.0
1,105,444 - ABZR87_RS05260 0.32 +0.1
1,105,452 + ABZR87_RS05260 0.32 +0.3
1,105,452 + ABZR87_RS05260 0.32 +2.7
1,105,452 + ABZR87_RS05260 0.32 -2.5
1,105,453 - ABZR87_RS05260 0.32 +0.2
1,105,453 - ABZR87_RS05260 0.32 +1.2
1,105,453 - ABZR87_RS05260 0.32 +0.0
1,105,458 + ABZR87_RS05260 0.33 +0.6
1,105,458 + ABZR87_RS05260 0.33 -0.5
1,105,612 + ABZR87_RS05260 0.44 +0.2
1,105,815 + ABZR87_RS05260 0.60 -1.0
1,105,815 + ABZR87_RS05260 0.60 +0.3
1,105,815 + ABZR87_RS05260 0.60 -0.8
1,105,815 + ABZR87_RS05260 0.60 -0.3
1,105,815 + ABZR87_RS05260 0.60 -0.4
1,105,816 - ABZR87_RS05260 0.60 -1.1
1,105,816 - ABZR87_RS05260 0.60 +0.1
1,105,816 - ABZR87_RS05260 0.60 -0.0
1,105,816 - ABZR87_RS05260 0.60 -0.0
1,105,816 - ABZR87_RS05260 0.60 -0.2
1,105,926 + ABZR87_RS05260 0.68 +0.3
1,105,926 + ABZR87_RS05260 0.68 -0.2
1,105,927 - ABZR87_RS05260 0.68 +0.1
1,105,927 - ABZR87_RS05260 0.68 -0.0
1,105,927 - ABZR87_RS05260 0.68 +0.4
1,105,927 - ABZR87_RS05260 0.68 -0.1
1,106,055 - ABZR87_RS05260 0.78 -0.6
1,106,062 + ABZR87_RS05260 0.78 +0.2
1,106,062 + ABZR87_RS05260 0.78 +0.0
1,106,062 + ABZR87_RS05260 0.78 +0.3
1,106,062 + ABZR87_RS05260 0.78 -0.6
1,106,062 + ABZR87_RS05260 0.78 +0.7
1,106,063 - ABZR87_RS05260 0.78 -1.6
1,106,063 - ABZR87_RS05260 0.78 -0.4
1,106,063 - ABZR87_RS05260 0.78 +0.4
1,106,063 - ABZR87_RS05260 0.78 -0.3
1,106,191 - ABZR87_RS05260 0.88 +0.4
1,106,223 + -0.3
1,106,223 + +0.2
1,106,223 + -0.4
1,106,223 + -0.6
1,106,223 + -0.2
1,106,223 + -0.7
1,106,223 + +0.4
1,106,223 + -0.3
1,106,223 + +0.1
1,106,223 + -0.5
1,106,223 + +0.9
1,106,223 + -2.3
1,106,223 + -0.0
1,106,223 + -0.3
1,106,223 + -1.4
1,106,224 - -0.6
1,106,224 - -0.2
1,106,224 - +0.4
1,106,224 - -0.3
1,106,224 - +0.6
1,106,224 - -0.5
1,106,224 - -0.3
1,106,224 - +0.1
1,106,225 + -1.4
1,106,225 + +0.9
1,106,225 + +0.0
1,106,225 + +0.2
1,106,225 + -0.1
1,106,225 + -0.1
1,106,225 + +0.7
1,106,225 + -1.3
1,106,225 + -0.9
1,106,225 + +0.6
1,106,226 - -0.2
1,106,226 - +0.1
1,106,226 - +0.4
1,106,226 - -0.8
1,106,226 - -2.8
1,106,226 - -0.2
1,106,226 - +0.2
1,106,226 - +0.5
1,106,226 - -0.9
1,106,274 + -0.6
1,106,274 + -0.1
1,106,274 + +0.8
1,106,274 + -0.2
1,106,274 + +0.3
1,106,274 + -1.0
1,106,274 + -0.5
1,106,275 - +0.8
1,106,275 - +0.2
1,106,275 - -0.4
1,106,275 - +0.5
1,106,275 - +0.3
1,106,275 - -0.2
1,106,275 - +0.1
1,106,275 - -0.2
1,106,342 + -0.2
1,106,342 + -1.3
1,106,343 - -0.1
1,106,343 - -1.0
1,106,343 - -0.1
1,106,346 + -0.1
1,106,346 + -0.7
1,106,346 + -0.9
1,106,347 - +0.3
1,106,347 - -0.6
1,106,347 - +1.0
1,106,347 - -0.7
1,106,347 - -0.4
1,106,347 - +0.4
1,106,347 - -1.1
1,106,347 - -0.4
1,106,347 - -1.0
1,106,347 - +2.2
1,106,347 - +1.6
1,106,347 - +0.7
1,106,355 + +0.9
1,106,355 + +0.5
1,106,355 + -0.2
1,106,355 + -0.0
1,106,356 - -0.5
1,106,356 - -0.2
1,106,404 + +0.3
1,106,404 + +1.6
1,106,405 - +0.0
1,106,405 - +0.8
1,106,405 - +0.3
1,106,483 - ABZR87_RS05265 0.14 +0.4
1,106,483 - ABZR87_RS05265 0.14 -0.7
1,106,483 - ABZR87_RS05265 0.14 +0.5
1,106,618 + ABZR87_RS05265 0.31 -0.2
1,106,696 + ABZR87_RS05265 0.41 -0.2
1,106,696 + ABZR87_RS05265 0.41 +0.0
1,106,734 + ABZR87_RS05265 0.46 +0.2
1,106,734 + ABZR87_RS05265 0.46 -0.1
1,106,734 + ABZR87_RS05265 0.46 +0.3
1,106,734 + ABZR87_RS05265 0.46 +0.2
1,106,734 + ABZR87_RS05265 0.46 -0.4
1,106,734 + ABZR87_RS05265 0.46 -0.4
1,106,735 - ABZR87_RS05265 0.46 +0.5
1,106,735 - ABZR87_RS05265 0.46 -0.5
1,106,735 - ABZR87_RS05265 0.46 +0.2
1,106,735 - ABZR87_RS05265 0.46 +0.3
1,106,735 - ABZR87_RS05265 0.46 -1.1
1,106,752 + ABZR87_RS05265 0.48 +0.1
1,106,908 + ABZR87_RS05265 0.68 +1.2
1,106,908 + ABZR87_RS05265 0.68 +0.8
1,106,956 + ABZR87_RS05265 0.74 +0.1
1,106,956 + ABZR87_RS05265 0.74 -0.1
1,106,956 + ABZR87_RS05265 0.74 +1.1
1,106,957 - ABZR87_RS05265 0.74 -0.5
1,106,957 - ABZR87_RS05265 0.74 -0.6
1,106,957 - ABZR87_RS05265 0.74 -1.0
1,106,957 - ABZR87_RS05265 0.74 +1.4
1,107,067 + ABZR87_RS05265 0.88 +0.4
1,107,068 - ABZR87_RS05265 0.88 +1.9
1,107,068 - ABZR87_RS05265 0.88 +0.2
1,107,092 - -0.8
1,107,092 - +0.0
1,107,230 + -0.3
1,107,230 + +0.3
1,107,230 + +2.1
1,107,231 - -0.1
1,107,231 - +0.3
1,107,252 - -0.1
1,107,263 + +0.3
1,107,264 - +2.1
1,107,264 - -0.0
1,107,306 - ABZR87_RS05270 0.17 +0.1
1,107,306 - ABZR87_RS05270 0.17 +0.9
1,107,306 - ABZR87_RS05270 0.17 +0.4
1,107,306 - ABZR87_RS05270 0.17 -0.3
1,107,306 - ABZR87_RS05270 0.17 +0.8
1,107,330 - ABZR87_RS05270 0.22 -0.0
1,107,330 - ABZR87_RS05270 0.22 +0.7
1,107,330 - ABZR87_RS05270 0.22 +0.5
1,107,330 - ABZR87_RS05270 0.22 -0.1

Or see this region's nucleotide sequence