Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01165

Experiment: nitrogen source nitrate 20mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01155 and ABZR87_RS01160 overlap by 4 nucleotidesABZR87_RS01160 and ABZR87_RS01165 are separated by 171 nucleotidesABZR87_RS01165 and ABZR87_RS01170 are separated by 67 nucleotidesABZR87_RS01170 and ABZR87_RS01175 are separated by 43 nucleotides ABZR87_RS01155: ABZR87_RS01155 - CidA/LrgA family protein, at 240,838 to 241,215 _RS01155 ABZR87_RS01160: ABZR87_RS01160 - LrgB family protein, at 241,212 to 241,943 _RS01160 ABZR87_RS01165: ABZR87_RS01165 - VOC family protein, at 242,115 to 242,510 _RS01165 ABZR87_RS01170: ABZR87_RS01170 - cupin domain-containing protein, at 242,578 to 243,057 _RS01170 ABZR87_RS01175: ABZR87_RS01175 - YafY family protein, at 243,101 to 243,799 _RS01175 Position (kb) 242 243Strain fitness (log2 ratio) -2 -1 0 1 2at 241.115 kb on + strand, within ABZR87_RS01155at 241.116 kb on - strand, within ABZR87_RS01155at 241.116 kb on - strand, within ABZR87_RS01155at 241.251 kb on + strandat 241.252 kb on - strandat 241.300 kb on - strand, within ABZR87_RS01160at 241.410 kb on + strand, within ABZR87_RS01160at 241.410 kb on + strand, within ABZR87_RS01160at 241.410 kb on + strand, within ABZR87_RS01160at 241.410 kb on + strand, within ABZR87_RS01160at 241.411 kb on - strand, within ABZR87_RS01160at 241.419 kb on + strand, within ABZR87_RS01160at 241.419 kb on + strand, within ABZR87_RS01160at 241.419 kb on + strand, within ABZR87_RS01160at 241.419 kb on + strand, within ABZR87_RS01160at 241.420 kb on - strand, within ABZR87_RS01160at 241.420 kb on - strand, within ABZR87_RS01160at 241.776 kb on + strand, within ABZR87_RS01160at 241.776 kb on + strand, within ABZR87_RS01160at 241.824 kb on - strand, within ABZR87_RS01160at 241.970 kb on + strandat 242.322 kb on + strand, within ABZR87_RS01165at 242.323 kb on - strand, within ABZR87_RS01165at 242.493 kb on + strandat 242.493 kb on + strandat 242.494 kb on - strandat 242.494 kb on - strandat 242.508 kb on + strandat 242.509 kb on - strandat 242.509 kb on - strandat 242.509 kb on - strandat 242.511 kb on + strandat 242.511 kb on + strandat 242.511 kb on + strandat 242.512 kb on - strandat 242.512 kb on - strandat 242.517 kb on + strandat 242.597 kb on - strandat 242.759 kb on - strand, within ABZR87_RS01170at 242.791 kb on + strand, within ABZR87_RS01170at 242.791 kb on + strand, within ABZR87_RS01170at 242.791 kb on + strand, within ABZR87_RS01170at 242.792 kb on - strand, within ABZR87_RS01170at 242.792 kb on - strand, within ABZR87_RS01170at 242.792 kb on - strand, within ABZR87_RS01170at 242.792 kb on - strand, within ABZR87_RS01170at 242.792 kb on - strand, within ABZR87_RS01170at 242.792 kb on - strand, within ABZR87_RS01170at 242.792 kb on - strand, within ABZR87_RS01170at 242.792 kb on - strand, within ABZR87_RS01170at 242.920 kb on + strand, within ABZR87_RS01170at 242.920 kb on + strand, within ABZR87_RS01170at 242.921 kb on - strand, within ABZR87_RS01170at 243.097 kb on + strandat 243.221 kb on + strand, within ABZR87_RS01175at 243.221 kb on + strand, within ABZR87_RS01175at 243.222 kb on - strand, within ABZR87_RS01175at 243.222 kb on - strand, within ABZR87_RS01175at 243.230 kb on - strand, within ABZR87_RS01175at 243.303 kb on - strand, within ABZR87_RS01175at 243.492 kb on - strand, within ABZR87_RS01175

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrate 20mM
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241,115 + ABZR87_RS01155 0.73 -0.1
241,116 - ABZR87_RS01155 0.74 -0.2
241,116 - ABZR87_RS01155 0.74 -1.1
241,251 + -0.4
241,252 - -1.1
241,300 - ABZR87_RS01160 0.12 +1.0
241,410 + ABZR87_RS01160 0.27 -0.1
241,410 + ABZR87_RS01160 0.27 +0.3
241,410 + ABZR87_RS01160 0.27 +0.6
241,410 + ABZR87_RS01160 0.27 -0.2
241,411 - ABZR87_RS01160 0.27 -0.6
241,419 + ABZR87_RS01160 0.28 -0.7
241,419 + ABZR87_RS01160 0.28 +0.6
241,419 + ABZR87_RS01160 0.28 +1.6
241,419 + ABZR87_RS01160 0.28 -0.7
241,420 - ABZR87_RS01160 0.28 +0.1
241,420 - ABZR87_RS01160 0.28 -0.1
241,776 + ABZR87_RS01160 0.77 +0.4
241,776 + ABZR87_RS01160 0.77 +0.4
241,824 - ABZR87_RS01160 0.84 -0.3
241,970 + +1.8
242,322 + ABZR87_RS01165 0.52 +1.4
242,323 - ABZR87_RS01165 0.53 +0.3
242,493 + +0.3
242,493 + +0.4
242,494 - +0.5
242,494 - -0.3
242,508 + +0.4
242,509 - -0.1
242,509 - -0.6
242,509 - +0.8
242,511 + -0.8
242,511 + -0.6
242,511 + +0.1
242,512 - -0.7
242,512 - +0.8
242,517 + +0.1
242,597 - -0.4
242,759 - ABZR87_RS01170 0.38 -0.2
242,791 + ABZR87_RS01170 0.44 +1.0
242,791 + ABZR87_RS01170 0.44 -1.8
242,791 + ABZR87_RS01170 0.44 +0.6
242,792 - ABZR87_RS01170 0.45 -0.2
242,792 - ABZR87_RS01170 0.45 -0.2
242,792 - ABZR87_RS01170 0.45 -0.1
242,792 - ABZR87_RS01170 0.45 +1.0
242,792 - ABZR87_RS01170 0.45 -0.6
242,792 - ABZR87_RS01170 0.45 -0.0
242,792 - ABZR87_RS01170 0.45 -0.5
242,792 - ABZR87_RS01170 0.45 +0.3
242,920 + ABZR87_RS01170 0.71 +1.3
242,920 + ABZR87_RS01170 0.71 +0.3
242,921 - ABZR87_RS01170 0.71 +0.4
243,097 + +2.0
243,221 + ABZR87_RS01175 0.17 -0.4
243,221 + ABZR87_RS01175 0.17 +0.5
243,222 - ABZR87_RS01175 0.17 +1.0
243,222 - ABZR87_RS01175 0.17 +0.7
243,230 - ABZR87_RS01175 0.18 +1.2
243,303 - ABZR87_RS01175 0.29 +0.8
243,492 - ABZR87_RS01175 0.56 -0.0

Or see this region's nucleotide sequence