Experiment: RCH2_defined
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_626 and Pf6N2E2_627 are separated by 791 nucleotides Pf6N2E2_627 and Pf6N2E2_628 are separated by 14 nucleotides
Pf6N2E2_626 - hypothetical protein, at 713,074 to 713,442
_626
Pf6N2E2_627 - 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43), at 714,234 to 715,211
_627
Pf6N2E2_628 - 2-ketogluconate transporter, at 715,226 to 716,524
_628
Position (kb) 714
715
716 Strain fitness (log2 ratio) -2
-1
0
1
2 at 713.440 kb on + strand at 713.440 kb on + strand at 713.440 kb on + strand at 713.441 kb on - strand at 713.473 kb on + strand at 713.473 kb on + strand at 713.474 kb on - strand at 713.531 kb on + strand at 713.542 kb on + strand at 713.542 kb on + strand at 713.542 kb on + strand at 713.542 kb on + strand at 713.542 kb on + strand at 713.542 kb on + strand at 713.542 kb on + strand at 713.543 kb on - strand at 713.543 kb on - strand at 713.543 kb on - strand at 713.543 kb on - strand at 713.543 kb on - strand at 713.543 kb on - strand at 713.543 kb on - strand at 713.543 kb on - strand at 713.543 kb on - strand at 713.543 kb on - strand at 713.543 kb on - strand at 713.543 kb on - strand at 713.660 kb on + strand at 713.661 kb on - strand at 713.661 kb on - strand at 713.690 kb on + strand at 713.690 kb on + strand at 713.691 kb on - strand at 713.691 kb on - strand at 713.691 kb on - strand at 713.713 kb on + strand at 713.713 kb on + strand at 713.714 kb on - strand at 713.715 kb on + strand at 713.715 kb on + strand at 713.716 kb on - strand at 713.810 kb on + strand at 713.810 kb on + strand at 713.814 kb on + strand at 713.814 kb on + strand at 713.814 kb on + strand at 713.814 kb on + strand at 713.814 kb on + strand at 713.814 kb on + strand at 713.814 kb on + strand at 713.815 kb on - strand at 713.815 kb on - strand at 713.815 kb on - strand at 713.815 kb on - strand at 713.815 kb on - strand at 713.815 kb on - strand at 713.837 kb on + strand at 713.838 kb on - strand at 713.838 kb on - strand at 713.847 kb on - strand at 713.854 kb on + strand at 713.854 kb on + strand at 713.854 kb on + strand at 713.855 kb on - strand at 713.939 kb on + strand at 713.939 kb on + strand at 713.940 kb on - strand at 713.940 kb on - strand at 713.944 kb on + strand at 713.958 kb on + strand at 713.958 kb on + strand at 713.959 kb on - strand at 713.959 kb on - strand at 713.960 kb on + strand at 713.961 kb on - strand at 713.961 kb on - strand at 713.961 kb on - strand at 714.231 kb on + strand at 714.231 kb on + strand at 714.232 kb on - strand at 714.516 kb on - strand, within Pf6N2E2_627 at 714.516 kb on - strand, within Pf6N2E2_627 at 714.640 kb on + strand, within Pf6N2E2_627 at 714.691 kb on + strand, within Pf6N2E2_627 at 714.691 kb on + strand, within Pf6N2E2_627 at 714.692 kb on - strand, within Pf6N2E2_627 at 714.692 kb on - strand, within Pf6N2E2_627 at 714.961 kb on + strand, within Pf6N2E2_627 at 714.973 kb on + strand, within Pf6N2E2_627 at 714.973 kb on + strand, within Pf6N2E2_627 at 714.974 kb on - strand, within Pf6N2E2_627 at 714.974 kb on - strand, within Pf6N2E2_627 at 714.974 kb on - strand, within Pf6N2E2_627 at 714.974 kb on - strand, within Pf6N2E2_627 at 715.189 kb on + strand at 715.189 kb on + strand at 715.190 kb on - strand at 715.190 kb on - strand at 715.384 kb on - strand, within Pf6N2E2_628 at 715.512 kb on + strand, within Pf6N2E2_628 at 715.512 kb on + strand, within Pf6N2E2_628 at 715.513 kb on - strand, within Pf6N2E2_628 at 715.513 kb on - strand, within Pf6N2E2_628 at 715.513 kb on - strand, within Pf6N2E2_628 at 715.513 kb on - strand, within Pf6N2E2_628 at 715.513 kb on - strand, within Pf6N2E2_628 at 715.513 kb on - strand, within Pf6N2E2_628 at 715.513 kb on - strand, within Pf6N2E2_628 at 715.513 kb on - strand, within Pf6N2E2_628 at 715.545 kb on + strand, within Pf6N2E2_628 at 715.545 kb on + strand, within Pf6N2E2_628 at 715.578 kb on + strand, within Pf6N2E2_628 at 715.579 kb on - strand, within Pf6N2E2_628 at 715.587 kb on + strand, within Pf6N2E2_628 at 715.588 kb on - strand, within Pf6N2E2_628 at 715.695 kb on + strand, within Pf6N2E2_628 at 715.854 kb on + strand, within Pf6N2E2_628 at 716.149 kb on - strand, within Pf6N2E2_628 at 716.149 kb on - strand, within Pf6N2E2_628 at 716.149 kb on - strand, within Pf6N2E2_628
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined remove 713,440 + +0.1 713,440 + +1.0 713,440 + +0.0 713,441 - +1.1 713,473 + -0.6 713,473 + +0.3 713,474 - -0.1 713,531 + +0.5 713,542 + +0.7 713,542 + +0.1 713,542 + +0.7 713,542 + +0.7 713,542 + -0.1 713,542 + -0.0 713,542 + -0.4 713,543 - -1.0 713,543 - +0.1 713,543 - +1.3 713,543 - -0.2 713,543 - -0.3 713,543 - +0.4 713,543 - +1.1 713,543 - +0.1 713,543 - -0.3 713,543 - +2.1 713,543 - -0.6 713,543 - +0.6 713,660 + +1.6 713,661 - +0.3 713,661 - -0.6 713,690 + +0.1 713,690 + +0.4 713,691 - -0.3 713,691 - -0.5 713,691 - -1.1 713,713 + -0.3 713,713 + +0.5 713,714 - -0.8 713,715 + +0.3 713,715 + +0.1 713,716 - -0.3 713,810 + -1.9 713,810 + -1.0 713,814 + -0.5 713,814 + -1.4 713,814 + -1.1 713,814 + +0.5 713,814 + +1.7 713,814 + -1.2 713,814 + -0.8 713,815 - +0.6 713,815 - -0.4 713,815 - -0.2 713,815 - +0.1 713,815 - -1.1 713,815 - +0.6 713,837 + +0.6 713,838 - -0.2 713,838 - +0.1 713,847 - -0.0 713,854 + +0.8 713,854 + +0.4 713,854 + -0.4 713,855 - +0.1 713,939 + +0.7 713,939 + -0.1 713,940 - +1.3 713,940 - +0.3 713,944 + +0.3 713,958 + +1.3 713,958 + +0.2 713,959 - -1.2 713,959 - -0.8 713,960 + -0.4 713,961 - -1.2 713,961 - -0.0 713,961 - +0.6 714,231 + +0.3 714,231 + -0.3 714,232 - -0.3 714,516 - Pf6N2E2_627 0.29 -1.2 714,516 - Pf6N2E2_627 0.29 +0.2 714,640 + Pf6N2E2_627 0.42 -0.2 714,691 + Pf6N2E2_627 0.47 -0.5 714,691 + Pf6N2E2_627 0.47 +0.1 714,692 - Pf6N2E2_627 0.47 +0.5 714,692 - Pf6N2E2_627 0.47 -1.1 714,961 + Pf6N2E2_627 0.74 +0.7 714,973 + Pf6N2E2_627 0.76 +0.4 714,973 + Pf6N2E2_627 0.76 +0.4 714,974 - Pf6N2E2_627 0.76 +0.1 714,974 - Pf6N2E2_627 0.76 +0.4 714,974 - Pf6N2E2_627 0.76 -0.8 714,974 - Pf6N2E2_627 0.76 -0.4 715,189 + -1.2 715,189 + +0.5 715,190 - -0.5 715,190 - -1.7 715,384 - Pf6N2E2_628 0.12 -1.0 715,512 + Pf6N2E2_628 0.22 -0.9 715,512 + Pf6N2E2_628 0.22 +0.1 715,513 - Pf6N2E2_628 0.22 -0.4 715,513 - Pf6N2E2_628 0.22 -0.5 715,513 - Pf6N2E2_628 0.22 +0.1 715,513 - Pf6N2E2_628 0.22 +0.2 715,513 - Pf6N2E2_628 0.22 +0.6 715,513 - Pf6N2E2_628 0.22 -0.1 715,513 - Pf6N2E2_628 0.22 +0.1 715,513 - Pf6N2E2_628 0.22 -0.7 715,545 + Pf6N2E2_628 0.25 -1.9 715,545 + Pf6N2E2_628 0.25 +0.2 715,578 + Pf6N2E2_628 0.27 -0.3 715,579 - Pf6N2E2_628 0.27 -0.2 715,587 + Pf6N2E2_628 0.28 -0.2 715,588 - Pf6N2E2_628 0.28 -0.9 715,695 + Pf6N2E2_628 0.36 -0.5 715,854 + Pf6N2E2_628 0.48 -0.2 716,149 - Pf6N2E2_628 0.71 -0.6 716,149 - Pf6N2E2_628 0.71 -0.4 716,149 - Pf6N2E2_628 0.71 +1.1
Or see this region's nucleotide sequence