Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17370

Experiment: nitrogen source Ammonium chloride 20mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17365 and ABZR87_RS17370 are separated by 70 nucleotidesABZR87_RS17370 and ABZR87_RS17375 are separated by 22 nucleotides ABZR87_RS17365: ABZR87_RS17365 - serine hydrolase, at 250,784 to 251,926 _RS17365 ABZR87_RS17370: ABZR87_RS17370 - DUF1854 domain-containing protein, at 251,997 to 252,467 _RS17370 ABZR87_RS17375: ABZR87_RS17375 - ABC transporter ATP-binding protein, at 252,490 to 254,796 _RS17375 Position (kb) 251 252 253Strain fitness (log2 ratio) -2 -1 0 1 2at 251.028 kb on - strand, within ABZR87_RS17365at 251.028 kb on - strand, within ABZR87_RS17365at 251.028 kb on - strand, within ABZR87_RS17365at 251.028 kb on - strand, within ABZR87_RS17365at 251.028 kb on - strand, within ABZR87_RS17365at 251.028 kb on - strand, within ABZR87_RS17365at 251.360 kb on + strand, within ABZR87_RS17365at 251.360 kb on + strand, within ABZR87_RS17365at 251.360 kb on + strand, within ABZR87_RS17365at 251.360 kb on + strand, within ABZR87_RS17365at 251.360 kb on + strand, within ABZR87_RS17365at 251.361 kb on - strand, within ABZR87_RS17365at 251.361 kb on - strand, within ABZR87_RS17365at 251.361 kb on - strand, within ABZR87_RS17365at 251.408 kb on + strand, within ABZR87_RS17365at 251.409 kb on - strand, within ABZR87_RS17365at 251.409 kb on - strand, within ABZR87_RS17365at 251.409 kb on - strand, within ABZR87_RS17365at 251.409 kb on - strand, within ABZR87_RS17365at 251.477 kb on + strand, within ABZR87_RS17365at 251.477 kb on + strand, within ABZR87_RS17365at 251.478 kb on - strand, within ABZR87_RS17365at 251.708 kb on + strand, within ABZR87_RS17365at 251.708 kb on + strand, within ABZR87_RS17365at 251.709 kb on - strand, within ABZR87_RS17365at 251.756 kb on + strand, within ABZR87_RS17365at 251.757 kb on - strand, within ABZR87_RS17365at 251.757 kb on - strand, within ABZR87_RS17365at 251.757 kb on - strand, within ABZR87_RS17365at 251.814 kb on + strandat 251.815 kb on - strandat 251.815 kb on - strandat 251.847 kb on - strandat 251.998 kb on + strandat 252.061 kb on + strand, within ABZR87_RS17370at 252.062 kb on - strand, within ABZR87_RS17370at 252.062 kb on - strand, within ABZR87_RS17370at 252.190 kb on + strand, within ABZR87_RS17370at 252.191 kb on - strand, within ABZR87_RS17370at 252.191 kb on - strand, within ABZR87_RS17370at 252.191 kb on - strand, within ABZR87_RS17370at 252.191 kb on - strand, within ABZR87_RS17370at 252.198 kb on + strand, within ABZR87_RS17370at 252.500 kb on + strandat 252.501 kb on - strandat 252.501 kb on - strandat 252.590 kb on + strandat 252.590 kb on + strandat 252.590 kb on + strandat 252.590 kb on + strandat 252.591 kb on - strandat 252.591 kb on - strandat 252.591 kb on - strandat 252.593 kb on + strandat 252.593 kb on + strandat 252.593 kb on + strandat 252.593 kb on + strandat 252.593 kb on + strandat 252.593 kb on + strandat 252.593 kb on + strandat 252.593 kb on + strandat 252.594 kb on - strandat 252.899 kb on + strand, within ABZR87_RS17375at 252.899 kb on + strand, within ABZR87_RS17375at 252.990 kb on - strand, within ABZR87_RS17375at 253.022 kb on - strand, within ABZR87_RS17375at 253.022 kb on - strand, within ABZR87_RS17375at 253.022 kb on - strand, within ABZR87_RS17375at 253.127 kb on + strand, within ABZR87_RS17375at 253.127 kb on + strand, within ABZR87_RS17375at 253.127 kb on + strand, within ABZR87_RS17375at 253.127 kb on + strand, within ABZR87_RS17375at 253.128 kb on - strand, within ABZR87_RS17375at 253.128 kb on - strand, within ABZR87_RS17375at 253.128 kb on - strand, within ABZR87_RS17375at 253.128 kb on - strand, within ABZR87_RS17375at 253.330 kb on + strand, within ABZR87_RS17375at 253.330 kb on + strand, within ABZR87_RS17375at 253.331 kb on - strand, within ABZR87_RS17375at 253.331 kb on - strand, within ABZR87_RS17375at 253.331 kb on - strand, within ABZR87_RS17375at 253.421 kb on + strand, within ABZR87_RS17375at 253.434 kb on + strand, within ABZR87_RS17375at 253.434 kb on + strand, within ABZR87_RS17375at 253.435 kb on - strand, within ABZR87_RS17375at 253.436 kb on + strand, within ABZR87_RS17375at 253.436 kb on + strand, within ABZR87_RS17375at 253.437 kb on - strand, within ABZR87_RS17375

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source Ammonium chloride 20mM
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251,028 - ABZR87_RS17365 0.21 +0.1
251,028 - ABZR87_RS17365 0.21 +0.7
251,028 - ABZR87_RS17365 0.21 -1.6
251,028 - ABZR87_RS17365 0.21 -0.2
251,028 - ABZR87_RS17365 0.21 +0.8
251,028 - ABZR87_RS17365 0.21 +0.1
251,360 + ABZR87_RS17365 0.50 +0.2
251,360 + ABZR87_RS17365 0.50 -0.5
251,360 + ABZR87_RS17365 0.50 +1.2
251,360 + ABZR87_RS17365 0.50 +0.7
251,360 + ABZR87_RS17365 0.50 -0.5
251,361 - ABZR87_RS17365 0.50 -0.2
251,361 - ABZR87_RS17365 0.50 -0.5
251,361 - ABZR87_RS17365 0.50 -0.2
251,408 + ABZR87_RS17365 0.55 -0.1
251,409 - ABZR87_RS17365 0.55 +0.2
251,409 - ABZR87_RS17365 0.55 +0.1
251,409 - ABZR87_RS17365 0.55 +0.3
251,409 - ABZR87_RS17365 0.55 +0.4
251,477 + ABZR87_RS17365 0.61 -1.0
251,477 + ABZR87_RS17365 0.61 +0.1
251,478 - ABZR87_RS17365 0.61 +0.1
251,708 + ABZR87_RS17365 0.81 +1.3
251,708 + ABZR87_RS17365 0.81 -0.5
251,709 - ABZR87_RS17365 0.81 +0.4
251,756 + ABZR87_RS17365 0.85 -1.8
251,757 - ABZR87_RS17365 0.85 -0.7
251,757 - ABZR87_RS17365 0.85 -1.8
251,757 - ABZR87_RS17365 0.85 -0.2
251,814 + +1.9
251,815 - +1.9
251,815 - -0.8
251,847 - +0.4
251,998 + +0.9
252,061 + ABZR87_RS17370 0.14 +0.7
252,062 - ABZR87_RS17370 0.14 +0.5
252,062 - ABZR87_RS17370 0.14 +0.9
252,190 + ABZR87_RS17370 0.41 -0.3
252,191 - ABZR87_RS17370 0.41 -0.1
252,191 - ABZR87_RS17370 0.41 +0.4
252,191 - ABZR87_RS17370 0.41 +0.6
252,191 - ABZR87_RS17370 0.41 -0.4
252,198 + ABZR87_RS17370 0.43 +1.0
252,500 + -1.9
252,501 - -0.2
252,501 - +0.4
252,590 + -0.5
252,590 + -0.1
252,590 + -1.0
252,590 + -0.8
252,591 - +0.3
252,591 - +0.1
252,591 - +0.1
252,593 + -0.6
252,593 + -0.6
252,593 + +1.2
252,593 + +0.9
252,593 + +0.1
252,593 + -0.3
252,593 + -0.4
252,593 + -0.2
252,594 - +0.1
252,899 + ABZR87_RS17375 0.18 +0.6
252,899 + ABZR87_RS17375 0.18 +0.9
252,990 - ABZR87_RS17375 0.22 +0.4
253,022 - ABZR87_RS17375 0.23 +0.3
253,022 - ABZR87_RS17375 0.23 -0.4
253,022 - ABZR87_RS17375 0.23 -0.2
253,127 + ABZR87_RS17375 0.28 -0.2
253,127 + ABZR87_RS17375 0.28 -0.9
253,127 + ABZR87_RS17375 0.28 +0.1
253,127 + ABZR87_RS17375 0.28 +0.2
253,128 - ABZR87_RS17375 0.28 +0.3
253,128 - ABZR87_RS17375 0.28 +0.4
253,128 - ABZR87_RS17375 0.28 -0.0
253,128 - ABZR87_RS17375 0.28 -1.1
253,330 + ABZR87_RS17375 0.36 -0.4
253,330 + ABZR87_RS17375 0.36 +1.4
253,331 - ABZR87_RS17375 0.36 +0.6
253,331 - ABZR87_RS17375 0.36 +1.3
253,331 - ABZR87_RS17375 0.36 +0.3
253,421 + ABZR87_RS17375 0.40 +0.4
253,434 + ABZR87_RS17375 0.41 -1.3
253,434 + ABZR87_RS17375 0.41 -0.4
253,435 - ABZR87_RS17375 0.41 +1.0
253,436 + ABZR87_RS17375 0.41 -0.7
253,436 + ABZR87_RS17375 0.41 -0.5
253,437 - ABZR87_RS17375 0.41 +0.8

Or see this region's nucleotide sequence