Experiment: RCH2 defined with Zinc 0.032 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_904 and Pf6N2E2_905 are separated by 347 nucleotides Pf6N2E2_905 and Pf6N2E2_906 overlap by 4 nucleotides Pf6N2E2_906 and Pf6N2E2_907 are separated by 81 nucleotides
Pf6N2E2_904 - hypothetical protein, at 1,058,788 to 1,059,894
_904
Pf6N2E2_905 - FIG00962753: hypothetical protein, at 1,060,242 to 1,060,574
_905
Pf6N2E2_906 - ISPpu14, transposase Orf2, at 1,060,571 to 1,060,906
_906
Pf6N2E2_907 - Mobile element protein, at 1,060,988 to 1,062,514
_907
Position (kb)
1060
1061 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1059.668 kb on + strand, within Pf6N2E2_904 at 1059.723 kb on + strand, within Pf6N2E2_904 at 1059.730 kb on - strand, within Pf6N2E2_904 at 1059.808 kb on + strand at 1059.846 kb on + strand at 1059.982 kb on + strand at 1059.983 kb on - strand at 1060.056 kb on - strand at 1060.091 kb on + strand at 1060.092 kb on - strand at 1060.097 kb on + strand at 1060.124 kb on + strand at 1060.124 kb on + strand at 1060.140 kb on - strand at 1060.263 kb on + strand at 1060.368 kb on - strand, within Pf6N2E2_905 at 1060.368 kb on - strand, within Pf6N2E2_905 at 1060.419 kb on - strand, within Pf6N2E2_905 at 1060.486 kb on + strand, within Pf6N2E2_905 at 1060.486 kb on + strand, within Pf6N2E2_905 at 1060.487 kb on - strand, within Pf6N2E2_905 at 1060.487 kb on - strand, within Pf6N2E2_905 at 1060.504 kb on + strand, within Pf6N2E2_905 at 1060.505 kb on - strand, within Pf6N2E2_905 at 1060.505 kb on - strand, within Pf6N2E2_905 at 1060.688 kb on + strand, within Pf6N2E2_906 at 1060.689 kb on - strand, within Pf6N2E2_906 at 1060.689 kb on - strand, within Pf6N2E2_906 at 1060.689 kb on - strand, within Pf6N2E2_906 at 1060.861 kb on - strand, within Pf6N2E2_906 at 1060.951 kb on - strand at 1060.951 kb on - strand at 1061.016 kb on + strand at 1061.017 kb on - strand at 1061.251 kb on - strand, within Pf6N2E2_907 at 1061.251 kb on - strand, within Pf6N2E2_907 at 1061.414 kb on + strand, within Pf6N2E2_907 at 1061.415 kb on - strand, within Pf6N2E2_907 at 1061.559 kb on + strand, within Pf6N2E2_907 at 1061.560 kb on - strand, within Pf6N2E2_907 at 1061.671 kb on - strand, within Pf6N2E2_907 at 1061.676 kb on + strand, within Pf6N2E2_907 at 1061.676 kb on + strand, within Pf6N2E2_907 at 1061.676 kb on + strand, within Pf6N2E2_907 at 1061.677 kb on - strand, within Pf6N2E2_907 at 1061.677 kb on - strand, within Pf6N2E2_907 at 1061.801 kb on + strand, within Pf6N2E2_907 at 1061.801 kb on + strand, within Pf6N2E2_907 at 1061.802 kb on - strand, within Pf6N2E2_907
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 defined with Zinc 0.032 mM remove 1,059,668 + Pf6N2E2_904 0.79 +0.8 1,059,723 + Pf6N2E2_904 0.84 +0.1 1,059,730 - Pf6N2E2_904 0.85 +1.4 1,059,808 + +0.3 1,059,846 + -0.1 1,059,982 + +0.0 1,059,983 - +0.3 1,060,056 - -0.3 1,060,091 + +0.6 1,060,092 - +0.9 1,060,097 + -1.8 1,060,124 + -1.0 1,060,124 + +0.9 1,060,140 - -0.1 1,060,263 + -0.6 1,060,368 - Pf6N2E2_905 0.38 -0.3 1,060,368 - Pf6N2E2_905 0.38 +0.4 1,060,419 - Pf6N2E2_905 0.53 -0.0 1,060,486 + Pf6N2E2_905 0.73 -0.6 1,060,486 + Pf6N2E2_905 0.73 -0.2 1,060,487 - Pf6N2E2_905 0.74 -0.5 1,060,487 - Pf6N2E2_905 0.74 +0.6 1,060,504 + Pf6N2E2_905 0.79 +0.1 1,060,505 - Pf6N2E2_905 0.79 -0.9 1,060,505 - Pf6N2E2_905 0.79 -1.4 1,060,688 + Pf6N2E2_906 0.35 -0.9 1,060,689 - Pf6N2E2_906 0.35 -0.8 1,060,689 - Pf6N2E2_906 0.35 -1.1 1,060,689 - Pf6N2E2_906 0.35 +0.1 1,060,861 - Pf6N2E2_906 0.86 -2.8 1,060,951 - -1.6 1,060,951 - +0.8 1,061,016 + -0.4 1,061,017 - +1.5 1,061,251 - Pf6N2E2_907 0.17 -0.8 1,061,251 - Pf6N2E2_907 0.17 -0.4 1,061,414 + Pf6N2E2_907 0.28 -0.4 1,061,415 - Pf6N2E2_907 0.28 -0.5 1,061,559 + Pf6N2E2_907 0.37 -0.2 1,061,560 - Pf6N2E2_907 0.37 -0.7 1,061,671 - Pf6N2E2_907 0.45 -0.2 1,061,676 + Pf6N2E2_907 0.45 +0.7 1,061,676 + Pf6N2E2_907 0.45 +0.2 1,061,676 + Pf6N2E2_907 0.45 +1.0 1,061,677 - Pf6N2E2_907 0.45 +1.0 1,061,677 - Pf6N2E2_907 0.45 -0.6 1,061,801 + Pf6N2E2_907 0.53 -1.6 1,061,801 + Pf6N2E2_907 0.53 -0.6 1,061,802 - Pf6N2E2_907 0.53 -0.4
Or see this region's nucleotide sequence