Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_6033

Experiment: RCH2 defined with Zinc 0.032 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_6031 and Pf6N2E2_6032 are separated by 161 nucleotidesPf6N2E2_6032 and Pf6N2E2_6033 are separated by 88 nucleotidesPf6N2E2_6033 and Pf6N2E2_6034 overlap by 4 nucleotidesPf6N2E2_6034 and Pf6N2E2_6035 are separated by 15 nucleotides Pf6N2E2_6031 - hypothetical protein, at 6,848,181 to 6,848,705 _6031 Pf6N2E2_6032 - acetyltransferase, GNAT family, at 6,848,867 to 6,849,340 _6032 Pf6N2E2_6033 - Sterol desaturase, at 6,849,429 to 6,850,526 _6033 Pf6N2E2_6034 - FIG00965471: hypothetical protein, at 6,850,523 to 6,851,338 _6034 Pf6N2E2_6035 - alpha/beta hydrolase fold, at 6,851,354 to 6,852,034 _6035 Position (kb) 6849 6850 6851Strain fitness (log2 ratio) -2 -1 0 1 2at 6848.551 kb on + strand, within Pf6N2E2_6031at 6848.551 kb on + strand, within Pf6N2E2_6031at 6848.741 kb on + strandat 6848.741 kb on + strandat 6848.742 kb on - strandat 6848.742 kb on - strandat 6848.820 kb on + strandat 6848.820 kb on + strandat 6848.821 kb on - strandat 6848.821 kb on - strandat 6848.824 kb on + strandat 6848.824 kb on + strandat 6848.824 kb on + strandat 6848.824 kb on + strandat 6848.824 kb on + strandat 6848.824 kb on + strandat 6848.824 kb on + strandat 6848.824 kb on + strandat 6848.824 kb on + strandat 6848.824 kb on + strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.825 kb on - strandat 6848.847 kb on + strandat 6848.847 kb on + strandat 6848.847 kb on + strandat 6848.893 kb on + strandat 6848.893 kb on + strandat 6848.926 kb on + strand, within Pf6N2E2_6032at 6848.926 kb on + strand, within Pf6N2E2_6032at 6848.926 kb on + strand, within Pf6N2E2_6032at 6848.927 kb on - strand, within Pf6N2E2_6032at 6848.927 kb on - strand, within Pf6N2E2_6032at 6848.927 kb on - strand, within Pf6N2E2_6032at 6849.037 kb on + strand, within Pf6N2E2_6032at 6849.038 kb on - strand, within Pf6N2E2_6032at 6849.038 kb on - strand, within Pf6N2E2_6032at 6849.187 kb on - strand, within Pf6N2E2_6032at 6849.278 kb on - strand, within Pf6N2E2_6032at 6849.278 kb on - strand, within Pf6N2E2_6032at 6849.283 kb on + strand, within Pf6N2E2_6032at 6849.283 kb on + strand, within Pf6N2E2_6032at 6849.313 kb on + strandat 6849.313 kb on + strandat 6849.313 kb on + strandat 6849.394 kb on + strandat 6849.450 kb on + strandat 6849.450 kb on + strandat 6849.451 kb on - strandat 6849.451 kb on - strandat 6849.451 kb on - strandat 6849.451 kb on - strandat 6849.552 kb on + strand, within Pf6N2E2_6033at 6849.553 kb on - strand, within Pf6N2E2_6033at 6849.678 kb on + strand, within Pf6N2E2_6033at 6849.678 kb on + strand, within Pf6N2E2_6033at 6849.678 kb on + strand, within Pf6N2E2_6033at 6849.678 kb on + strand, within Pf6N2E2_6033at 6849.681 kb on + strand, within Pf6N2E2_6033at 6849.681 kb on + strand, within Pf6N2E2_6033at 6849.744 kb on + strand, within Pf6N2E2_6033at 6849.744 kb on + strand, within Pf6N2E2_6033at 6849.744 kb on + strand, within Pf6N2E2_6033at 6849.744 kb on + strand, within Pf6N2E2_6033at 6849.745 kb on - strand, within Pf6N2E2_6033at 6849.745 kb on - strand, within Pf6N2E2_6033at 6849.745 kb on - strand, within Pf6N2E2_6033at 6849.766 kb on - strand, within Pf6N2E2_6033at 6849.838 kb on - strand, within Pf6N2E2_6033at 6849.877 kb on - strand, within Pf6N2E2_6033at 6849.949 kb on + strand, within Pf6N2E2_6033at 6850.047 kb on + strand, within Pf6N2E2_6033at 6850.048 kb on - strand, within Pf6N2E2_6033at 6850.048 kb on - strand, within Pf6N2E2_6033at 6850.048 kb on - strand, within Pf6N2E2_6033at 6850.095 kb on + strand, within Pf6N2E2_6033at 6850.095 kb on + strand, within Pf6N2E2_6033at 6850.096 kb on - strand, within Pf6N2E2_6033at 6850.290 kb on + strand, within Pf6N2E2_6033at 6850.290 kb on + strand, within Pf6N2E2_6033at 6850.291 kb on - strand, within Pf6N2E2_6033at 6850.291 kb on - strand, within Pf6N2E2_6033at 6850.291 kb on - strand, within Pf6N2E2_6033at 6850.365 kb on + strand, within Pf6N2E2_6033at 6850.365 kb on + strand, within Pf6N2E2_6033at 6850.365 kb on + strand, within Pf6N2E2_6033at 6850.365 kb on + strand, within Pf6N2E2_6033at 6850.366 kb on - strand, within Pf6N2E2_6033at 6850.366 kb on - strand, within Pf6N2E2_6033at 6850.366 kb on - strand, within Pf6N2E2_6033at 6850.366 kb on - strand, within Pf6N2E2_6033at 6850.366 kb on - strand, within Pf6N2E2_6033at 6850.366 kb on - strand, within Pf6N2E2_6033at 6850.366 kb on - strand, within Pf6N2E2_6033at 6850.366 kb on - strand, within Pf6N2E2_6033at 6850.367 kb on + strand, within Pf6N2E2_6033at 6850.408 kb on - strand, within Pf6N2E2_6033at 6850.426 kb on - strandat 6850.718 kb on + strand, within Pf6N2E2_6034at 6850.718 kb on + strand, within Pf6N2E2_6034at 6850.843 kb on + strand, within Pf6N2E2_6034at 6850.897 kb on + strand, within Pf6N2E2_6034at 6850.897 kb on + strand, within Pf6N2E2_6034at 6850.914 kb on - strand, within Pf6N2E2_6034at 6850.914 kb on - strand, within Pf6N2E2_6034at 6850.914 kb on - strand, within Pf6N2E2_6034at 6851.209 kb on - strand, within Pf6N2E2_6034at 6851.234 kb on + strand, within Pf6N2E2_6034at 6851.235 kb on - strand, within Pf6N2E2_6034at 6851.235 kb on - strand, within Pf6N2E2_6034at 6851.305 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 defined with Zinc 0.032 mM
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6,848,551 + Pf6N2E2_6031 0.70 +0.2
6,848,551 + Pf6N2E2_6031 0.70 -0.1
6,848,741 + -0.3
6,848,741 + -0.8
6,848,742 - +0.5
6,848,742 - -0.4
6,848,820 + -0.8
6,848,820 + -1.0
6,848,821 - +0.5
6,848,821 - -1.0
6,848,824 + +0.2
6,848,824 + -0.7
6,848,824 + +0.4
6,848,824 + +0.6
6,848,824 + +0.9
6,848,824 + +0.6
6,848,824 + -0.2
6,848,824 + -0.3
6,848,824 + -0.9
6,848,824 + -0.5
6,848,825 - -0.1
6,848,825 - +0.1
6,848,825 - +0.7
6,848,825 - +0.1
6,848,825 - +0.3
6,848,825 - +1.7
6,848,825 - +0.4
6,848,825 - -1.7
6,848,825 - +0.8
6,848,825 - -0.6
6,848,825 - -0.1
6,848,847 + -0.4
6,848,847 + -2.6
6,848,847 + +0.4
6,848,893 + +0.2
6,848,893 + -0.2
6,848,926 + Pf6N2E2_6032 0.12 -0.1
6,848,926 + Pf6N2E2_6032 0.12 -0.7
6,848,926 + Pf6N2E2_6032 0.12 +0.8
6,848,927 - Pf6N2E2_6032 0.13 -0.5
6,848,927 - Pf6N2E2_6032 0.13 +0.2
6,848,927 - Pf6N2E2_6032 0.13 +0.2
6,849,037 + Pf6N2E2_6032 0.36 -0.6
6,849,038 - Pf6N2E2_6032 0.36 -1.1
6,849,038 - Pf6N2E2_6032 0.36 +1.1
6,849,187 - Pf6N2E2_6032 0.68 +0.8
6,849,278 - Pf6N2E2_6032 0.87 -0.1
6,849,278 - Pf6N2E2_6032 0.87 -1.0
6,849,283 + Pf6N2E2_6032 0.88 -0.3
6,849,283 + Pf6N2E2_6032 0.88 -1.3
6,849,313 + -0.7
6,849,313 + +1.2
6,849,313 + -2.0
6,849,394 + -0.4
6,849,450 + -0.3
6,849,450 + +0.5
6,849,451 - -0.5
6,849,451 - +1.5
6,849,451 - +0.5
6,849,451 - +1.0
6,849,552 + Pf6N2E2_6033 0.11 -1.2
6,849,553 - Pf6N2E2_6033 0.11 -0.9
6,849,678 + Pf6N2E2_6033 0.23 -0.8
6,849,678 + Pf6N2E2_6033 0.23 +1.1
6,849,678 + Pf6N2E2_6033 0.23 -0.4
6,849,678 + Pf6N2E2_6033 0.23 -0.5
6,849,681 + Pf6N2E2_6033 0.23 -0.1
6,849,681 + Pf6N2E2_6033 0.23 -0.6
6,849,744 + Pf6N2E2_6033 0.29 -0.5
6,849,744 + Pf6N2E2_6033 0.29 -1.5
6,849,744 + Pf6N2E2_6033 0.29 -0.1
6,849,744 + Pf6N2E2_6033 0.29 -0.5
6,849,745 - Pf6N2E2_6033 0.29 +0.1
6,849,745 - Pf6N2E2_6033 0.29 -0.9
6,849,745 - Pf6N2E2_6033 0.29 -1.5
6,849,766 - Pf6N2E2_6033 0.31 +0.4
6,849,838 - Pf6N2E2_6033 0.37 -1.5
6,849,877 - Pf6N2E2_6033 0.41 -1.1
6,849,949 + Pf6N2E2_6033 0.47 -0.9
6,850,047 + Pf6N2E2_6033 0.56 -0.1
6,850,048 - Pf6N2E2_6033 0.56 -2.5
6,850,048 - Pf6N2E2_6033 0.56 +0.0
6,850,048 - Pf6N2E2_6033 0.56 -0.0
6,850,095 + Pf6N2E2_6033 0.61 -0.9
6,850,095 + Pf6N2E2_6033 0.61 -0.2
6,850,096 - Pf6N2E2_6033 0.61 +1.2
6,850,290 + Pf6N2E2_6033 0.78 -1.4
6,850,290 + Pf6N2E2_6033 0.78 -1.3
6,850,291 - Pf6N2E2_6033 0.79 +0.9
6,850,291 - Pf6N2E2_6033 0.79 +0.2
6,850,291 - Pf6N2E2_6033 0.79 +0.5
6,850,365 + Pf6N2E2_6033 0.85 +2.2
6,850,365 + Pf6N2E2_6033 0.85 +0.6
6,850,365 + Pf6N2E2_6033 0.85 -0.9
6,850,365 + Pf6N2E2_6033 0.85 +0.1
6,850,366 - Pf6N2E2_6033 0.85 -0.3
6,850,366 - Pf6N2E2_6033 0.85 -0.9
6,850,366 - Pf6N2E2_6033 0.85 -2.2
6,850,366 - Pf6N2E2_6033 0.85 +0.7
6,850,366 - Pf6N2E2_6033 0.85 +0.0
6,850,366 - Pf6N2E2_6033 0.85 +0.3
6,850,366 - Pf6N2E2_6033 0.85 -1.2
6,850,366 - Pf6N2E2_6033 0.85 +1.3
6,850,367 + Pf6N2E2_6033 0.85 -0.5
6,850,408 - Pf6N2E2_6033 0.89 -2.0
6,850,426 - -0.7
6,850,718 + Pf6N2E2_6034 0.24 +0.7
6,850,718 + Pf6N2E2_6034 0.24 -0.7
6,850,843 + Pf6N2E2_6034 0.39 +1.2
6,850,897 + Pf6N2E2_6034 0.46 +0.3
6,850,897 + Pf6N2E2_6034 0.46 -0.4
6,850,914 - Pf6N2E2_6034 0.48 -0.1
6,850,914 - Pf6N2E2_6034 0.48 +0.1
6,850,914 - Pf6N2E2_6034 0.48 +0.3
6,851,209 - Pf6N2E2_6034 0.84 +0.6
6,851,234 + Pf6N2E2_6034 0.87 +0.1
6,851,235 - Pf6N2E2_6034 0.87 +1.0
6,851,235 - Pf6N2E2_6034 0.87 +0.8
6,851,305 + -1.6

Or see this region's nucleotide sequence