Experiment: RCH2 defined with Zinc 0.032 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4972 and Pf6N2E2_4973 are separated by 111 nucleotides Pf6N2E2_4973 and Pf6N2E2_4974 are separated by 6 nucleotides Pf6N2E2_4974 and Pf6N2E2_4975 are separated by 746 nucleotides
Pf6N2E2_4972 - Inorganic pyrophosphatase (EC 3.6.1.1), at 5,737,546 to 5,738,073
_4972
Pf6N2E2_4973 - Inner membrane protein, at 5,738,185 to 5,738,997
_4973
Pf6N2E2_4974 - DedA protein, at 5,739,004 to 5,739,651
_4974
Pf6N2E2_4975 - Histone acetyltransferase HPA2 and related acetyltransferases, at 5,740,398 to 5,740,859
_4975
Position (kb)
5739
5740 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 5738.139 kb on - strand at 5738.139 kb on - strand at 5738.139 kb on - strand at 5738.145 kb on - strand at 5738.145 kb on - strand at 5738.178 kb on - strand at 5738.186 kb on + strand at 5738.186 kb on + strand at 5738.187 kb on - strand at 5738.187 kb on - strand at 5738.187 kb on - strand at 5738.187 kb on - strand at 5738.187 kb on - strand at 5738.187 kb on - strand at 5738.190 kb on - strand at 5738.190 kb on - strand at 5738.190 kb on - strand at 5738.190 kb on - strand at 5738.190 kb on - strand at 5738.190 kb on - strand at 5738.202 kb on - strand at 5738.256 kb on - strand at 5738.276 kb on + strand, within Pf6N2E2_4973 at 5738.276 kb on + strand, within Pf6N2E2_4973 at 5738.277 kb on - strand, within Pf6N2E2_4973 at 5738.277 kb on - strand, within Pf6N2E2_4973 at 5738.277 kb on - strand, within Pf6N2E2_4973 at 5738.277 kb on - strand, within Pf6N2E2_4973 at 5738.325 kb on - strand, within Pf6N2E2_4973 at 5738.325 kb on - strand, within Pf6N2E2_4973 at 5738.325 kb on - strand, within Pf6N2E2_4973 at 5738.325 kb on - strand, within Pf6N2E2_4973 at 5738.370 kb on - strand, within Pf6N2E2_4973 at 5738.552 kb on + strand, within Pf6N2E2_4973 at 5738.552 kb on + strand, within Pf6N2E2_4973 at 5738.729 kb on + strand, within Pf6N2E2_4973 at 5739.137 kb on + strand, within Pf6N2E2_4974 at 5739.137 kb on + strand, within Pf6N2E2_4974 at 5739.138 kb on - strand, within Pf6N2E2_4974 at 5739.207 kb on - strand, within Pf6N2E2_4974 at 5739.207 kb on - strand, within Pf6N2E2_4974 at 5739.207 kb on - strand, within Pf6N2E2_4974 at 5739.207 kb on - strand, within Pf6N2E2_4974 at 5739.302 kb on + strand, within Pf6N2E2_4974 at 5739.302 kb on + strand, within Pf6N2E2_4974 at 5739.326 kb on + strand, within Pf6N2E2_4974 at 5739.326 kb on + strand, within Pf6N2E2_4974 at 5739.395 kb on + strand, within Pf6N2E2_4974 at 5739.396 kb on - strand, within Pf6N2E2_4974 at 5739.396 kb on - strand, within Pf6N2E2_4974 at 5739.396 kb on - strand, within Pf6N2E2_4974 at 5739.396 kb on - strand, within Pf6N2E2_4974 at 5739.570 kb on - strand, within Pf6N2E2_4974 at 5739.584 kb on + strand, within Pf6N2E2_4974 at 5739.608 kb on + strand at 5739.608 kb on + strand at 5739.608 kb on + strand at 5739.655 kb on + strand at 5739.655 kb on + strand at 5739.655 kb on + strand at 5739.655 kb on + strand at 5739.655 kb on + strand at 5739.655 kb on + strand at 5739.655 kb on + strand at 5739.656 kb on - strand at 5739.722 kb on - strand at 5739.722 kb on - strand at 5739.722 kb on - strand at 5739.732 kb on + strand at 5739.732 kb on + strand at 5739.755 kb on - strand at 5739.756 kb on + strand at 5739.757 kb on - strand at 5739.757 kb on - strand at 5739.757 kb on - strand at 5739.790 kb on + strand at 5739.790 kb on + strand at 5739.790 kb on + strand at 5739.790 kb on + strand at 5739.936 kb on + strand at 5739.962 kb on + strand at 5739.975 kb on + strand at 5739.975 kb on + strand at 5739.976 kb on - strand at 5740.083 kb on + strand at 5740.083 kb on + strand at 5740.084 kb on - strand at 5740.150 kb on - strand at 5740.150 kb on - strand at 5740.288 kb on + strand at 5740.426 kb on + strand at 5740.426 kb on + strand at 5740.426 kb on + strand at 5740.426 kb on + strand at 5740.427 kb on - strand at 5740.427 kb on - strand at 5740.427 kb on - strand at 5740.427 kb on - strand at 5740.427 kb on - strand at 5740.468 kb on + strand, within Pf6N2E2_4975 at 5740.603 kb on + strand, within Pf6N2E2_4975 at 5740.603 kb on + strand, within Pf6N2E2_4975 at 5740.603 kb on + strand, within Pf6N2E2_4975 at 5740.603 kb on + strand, within Pf6N2E2_4975 at 5740.604 kb on - strand, within Pf6N2E2_4975 at 5740.604 kb on - strand, within Pf6N2E2_4975 at 5740.604 kb on - strand, within Pf6N2E2_4975 at 5740.604 kb on - strand, within Pf6N2E2_4975 at 5740.604 kb on - strand, within Pf6N2E2_4975
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 defined with Zinc 0.032 mM remove 5,738,139 - +0.1 5,738,139 - +0.1 5,738,139 - -0.4 5,738,145 - +1.3 5,738,145 - +0.5 5,738,178 - +0.4 5,738,186 + -0.5 5,738,186 + -0.4 5,738,187 - -0.4 5,738,187 - +0.0 5,738,187 - +0.5 5,738,187 - +1.2 5,738,187 - +1.0 5,738,187 - +0.2 5,738,190 - +0.2 5,738,190 - -0.8 5,738,190 - -1.8 5,738,190 - -0.5 5,738,190 - -1.4 5,738,190 - -0.1 5,738,202 - +0.7 5,738,256 - +0.2 5,738,276 + Pf6N2E2_4973 0.11 +0.0 5,738,276 + Pf6N2E2_4973 0.11 -0.3 5,738,277 - Pf6N2E2_4973 0.11 +0.3 5,738,277 - Pf6N2E2_4973 0.11 +0.3 5,738,277 - Pf6N2E2_4973 0.11 +0.6 5,738,277 - Pf6N2E2_4973 0.11 +0.3 5,738,325 - Pf6N2E2_4973 0.17 +1.7 5,738,325 - Pf6N2E2_4973 0.17 +0.6 5,738,325 - Pf6N2E2_4973 0.17 +2.8 5,738,325 - Pf6N2E2_4973 0.17 +0.3 5,738,370 - Pf6N2E2_4973 0.23 +1.4 5,738,552 + Pf6N2E2_4973 0.45 -0.2 5,738,552 + Pf6N2E2_4973 0.45 +0.7 5,738,729 + Pf6N2E2_4973 0.67 -0.6 5,739,137 + Pf6N2E2_4974 0.21 -0.6 5,739,137 + Pf6N2E2_4974 0.21 -0.8 5,739,138 - Pf6N2E2_4974 0.21 -1.1 5,739,207 - Pf6N2E2_4974 0.31 -1.0 5,739,207 - Pf6N2E2_4974 0.31 -2.5 5,739,207 - Pf6N2E2_4974 0.31 -0.3 5,739,207 - Pf6N2E2_4974 0.31 -0.9 5,739,302 + Pf6N2E2_4974 0.46 -1.0 5,739,302 + Pf6N2E2_4974 0.46 -1.5 5,739,326 + Pf6N2E2_4974 0.50 -1.9 5,739,326 + Pf6N2E2_4974 0.50 -1.4 5,739,395 + Pf6N2E2_4974 0.60 -0.9 5,739,396 - Pf6N2E2_4974 0.60 -0.1 5,739,396 - Pf6N2E2_4974 0.60 +0.3 5,739,396 - Pf6N2E2_4974 0.60 -1.5 5,739,396 - Pf6N2E2_4974 0.60 -0.5 5,739,570 - Pf6N2E2_4974 0.87 -0.3 5,739,584 + Pf6N2E2_4974 0.90 -1.4 5,739,608 + -1.7 5,739,608 + +0.2 5,739,608 + +0.2 5,739,655 + -1.5 5,739,655 + -0.3 5,739,655 + +0.1 5,739,655 + -0.9 5,739,655 + -0.0 5,739,655 + -0.3 5,739,655 + -0.7 5,739,656 - -0.1 5,739,722 - +0.5 5,739,722 - +0.2 5,739,722 - +0.6 5,739,732 + -0.2 5,739,732 + -0.3 5,739,755 - -0.3 5,739,756 + +0.6 5,739,757 - +0.4 5,739,757 - +0.3 5,739,757 - +0.6 5,739,790 + +0.3 5,739,790 + +0.9 5,739,790 + +0.4 5,739,790 + +0.2 5,739,936 + +0.0 5,739,962 + +0.2 5,739,975 + -1.0 5,739,975 + +0.7 5,739,976 - -0.8 5,740,083 + -0.2 5,740,083 + -0.7 5,740,084 - +1.2 5,740,150 - -0.2 5,740,150 - -1.5 5,740,288 + -0.3 5,740,426 + -0.1 5,740,426 + -0.5 5,740,426 + +0.0 5,740,426 + -0.5 5,740,427 - +0.7 5,740,427 - -0.4 5,740,427 - -0.9 5,740,427 - +0.7 5,740,427 - -1.0 5,740,468 + Pf6N2E2_4975 0.15 -0.2 5,740,603 + Pf6N2E2_4975 0.44 +0.7 5,740,603 + Pf6N2E2_4975 0.44 -0.3 5,740,603 + Pf6N2E2_4975 0.44 +0.7 5,740,603 + Pf6N2E2_4975 0.44 -0.7 5,740,604 - Pf6N2E2_4975 0.45 +0.2 5,740,604 - Pf6N2E2_4975 0.45 +1.2 5,740,604 - Pf6N2E2_4975 0.45 -0.3 5,740,604 - Pf6N2E2_4975 0.45 -0.4 5,740,604 - Pf6N2E2_4975 0.45 -1.4
Or see this region's nucleotide sequence