Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4267

Experiment: RCH2 defined with Zinc 0.032 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4266 and Pf6N2E2_4267 are separated by 12 nucleotidesPf6N2E2_4267 and Pf6N2E2_4268 are separated by 119 nucleotides Pf6N2E2_4266 - Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family, at 4,963,628 to 4,964,593 _4266 Pf6N2E2_4267 - FIG00957502: hypothetical protein, at 4,964,606 to 4,965,028 _4267 Pf6N2E2_4268 - Pyridoxal kinase (EC 2.7.1.35), at 4,965,148 to 4,966,020 _4268 Position (kb) 4964 4965 4966Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4963.627 kb on + strandat 4963.627 kb on + strandat 4963.627 kb on + strandat 4963.627 kb on + strandat 4963.627 kb on + strandat 4963.627 kb on + strandat 4963.628 kb on - strandat 4963.628 kb on - strandat 4963.628 kb on - strandat 4963.801 kb on + strand, within Pf6N2E2_4266at 4963.881 kb on + strand, within Pf6N2E2_4266at 4963.882 kb on - strand, within Pf6N2E2_4266at 4963.882 kb on - strand, within Pf6N2E2_4266at 4963.882 kb on - strand, within Pf6N2E2_4266at 4963.885 kb on + strand, within Pf6N2E2_4266at 4963.886 kb on - strand, within Pf6N2E2_4266at 4964.162 kb on + strand, within Pf6N2E2_4266at 4964.163 kb on - strand, within Pf6N2E2_4266at 4964.163 kb on - strand, within Pf6N2E2_4266at 4964.163 kb on - strand, within Pf6N2E2_4266at 4964.163 kb on - strand, within Pf6N2E2_4266at 4964.163 kb on - strand, within Pf6N2E2_4266at 4964.237 kb on - strand, within Pf6N2E2_4266at 4964.247 kb on + strand, within Pf6N2E2_4266at 4964.247 kb on + strand, within Pf6N2E2_4266at 4964.248 kb on - strand, within Pf6N2E2_4266at 4964.248 kb on - strand, within Pf6N2E2_4266at 4964.309 kb on + strand, within Pf6N2E2_4266at 4964.309 kb on + strand, within Pf6N2E2_4266at 4964.309 kb on + strand, within Pf6N2E2_4266at 4964.309 kb on + strand, within Pf6N2E2_4266at 4964.309 kb on + strand, within Pf6N2E2_4266at 4964.310 kb on - strand, within Pf6N2E2_4266at 4964.310 kb on - strand, within Pf6N2E2_4266at 4964.310 kb on - strand, within Pf6N2E2_4266at 4964.310 kb on - strand, within Pf6N2E2_4266at 4964.310 kb on - strand, within Pf6N2E2_4266at 4964.310 kb on - strand, within Pf6N2E2_4266at 4964.335 kb on + strand, within Pf6N2E2_4266at 4964.336 kb on - strand, within Pf6N2E2_4266at 4964.395 kb on - strand, within Pf6N2E2_4266at 4964.738 kb on + strand, within Pf6N2E2_4267at 4964.738 kb on + strand, within Pf6N2E2_4267at 4964.738 kb on + strand, within Pf6N2E2_4267at 4964.738 kb on + strand, within Pf6N2E2_4267at 4964.739 kb on - strand, within Pf6N2E2_4267at 4964.739 kb on - strand, within Pf6N2E2_4267at 4964.739 kb on - strand, within Pf6N2E2_4267at 4964.739 kb on - strand, within Pf6N2E2_4267at 4964.739 kb on - strand, within Pf6N2E2_4267at 4964.739 kb on - strand, within Pf6N2E2_4267at 4964.739 kb on - strand, within Pf6N2E2_4267at 4964.739 kb on - strand, within Pf6N2E2_4267at 4964.817 kb on + strand, within Pf6N2E2_4267at 4964.817 kb on + strand, within Pf6N2E2_4267at 4964.818 kb on - strand, within Pf6N2E2_4267at 4964.818 kb on - strand, within Pf6N2E2_4267at 4964.818 kb on - strand, within Pf6N2E2_4267at 4964.818 kb on - strand, within Pf6N2E2_4267at 4964.818 kb on - strand, within Pf6N2E2_4267at 4965.061 kb on + strandat 4965.062 kb on - strandat 4965.062 kb on - strandat 4965.062 kb on - strandat 4965.062 kb on - strandat 4965.062 kb on - strandat 4965.062 kb on - strandat 4965.083 kb on + strandat 4965.084 kb on - strandat 4965.084 kb on - strandat 4965.096 kb on + strandat 4965.097 kb on - strandat 4965.104 kb on + strandat 4965.104 kb on + strandat 4965.104 kb on + strandat 4965.104 kb on + strandat 4965.105 kb on - strandat 4965.105 kb on - strandat 4965.105 kb on - strandat 4965.156 kb on + strandat 4965.265 kb on - strand, within Pf6N2E2_4268at 4965.292 kb on + strand, within Pf6N2E2_4268at 4965.344 kb on + strand, within Pf6N2E2_4268at 4965.344 kb on + strand, within Pf6N2E2_4268at 4965.344 kb on + strand, within Pf6N2E2_4268at 4965.344 kb on + strand, within Pf6N2E2_4268at 4965.344 kb on + strand, within Pf6N2E2_4268at 4965.345 kb on - strand, within Pf6N2E2_4268at 4965.345 kb on - strand, within Pf6N2E2_4268at 4965.345 kb on - strand, within Pf6N2E2_4268at 4965.345 kb on - strand, within Pf6N2E2_4268at 4965.345 kb on - strand, within Pf6N2E2_4268at 4965.478 kb on + strand, within Pf6N2E2_4268at 4965.478 kb on + strand, within Pf6N2E2_4268at 4965.479 kb on - strand, within Pf6N2E2_4268at 4965.479 kb on - strand, within Pf6N2E2_4268at 4965.479 kb on - strandat 4965.851 kb on + strand, within Pf6N2E2_4268at 4965.851 kb on + strand, within Pf6N2E2_4268at 4965.854 kb on + strand, within Pf6N2E2_4268at 4965.854 kb on + strand, within Pf6N2E2_4268at 4965.854 kb on + strand, within Pf6N2E2_4268at 4965.854 kb on + strand, within Pf6N2E2_4268at 4965.855 kb on - strand, within Pf6N2E2_4268at 4965.940 kb on + strandat 4965.940 kb on + strandat 4965.940 kb on + strandat 4965.940 kb on + strandat 4965.940 kb on + strandat 4965.940 kb on + strandat 4965.940 kb on + strandat 4965.940 kb on + strandat 4965.940 kb on + strandat 4965.941 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 defined with Zinc 0.032 mM
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4,963,627 + -0.3
4,963,627 + -0.1
4,963,627 + -0.5
4,963,627 + +0.6
4,963,627 + -0.6
4,963,627 + +0.8
4,963,628 - -0.6
4,963,628 - -0.2
4,963,628 - -0.5
4,963,801 + Pf6N2E2_4266 0.18 +0.4
4,963,881 + Pf6N2E2_4266 0.26 -0.2
4,963,882 - Pf6N2E2_4266 0.26 -0.1
4,963,882 - Pf6N2E2_4266 0.26 -0.2
4,963,882 - Pf6N2E2_4266 0.26 -0.8
4,963,885 + Pf6N2E2_4266 0.27 -0.6
4,963,886 - Pf6N2E2_4266 0.27 +0.9
4,964,162 + Pf6N2E2_4266 0.55 +0.4
4,964,163 - Pf6N2E2_4266 0.55 +0.3
4,964,163 - Pf6N2E2_4266 0.55 -0.6
4,964,163 - Pf6N2E2_4266 0.55 -1.0
4,964,163 - Pf6N2E2_4266 0.55 -0.5
4,964,163 - Pf6N2E2_4266 0.55 -0.5
4,964,237 - Pf6N2E2_4266 0.63 +0.7
4,964,247 + Pf6N2E2_4266 0.64 +1.5
4,964,247 + Pf6N2E2_4266 0.64 -0.9
4,964,248 - Pf6N2E2_4266 0.64 +0.4
4,964,248 - Pf6N2E2_4266 0.64 -0.3
4,964,309 + Pf6N2E2_4266 0.70 -0.7
4,964,309 + Pf6N2E2_4266 0.70 -0.1
4,964,309 + Pf6N2E2_4266 0.70 -1.6
4,964,309 + Pf6N2E2_4266 0.70 +0.8
4,964,309 + Pf6N2E2_4266 0.70 -0.5
4,964,310 - Pf6N2E2_4266 0.71 +0.7
4,964,310 - Pf6N2E2_4266 0.71 +0.2
4,964,310 - Pf6N2E2_4266 0.71 -0.6
4,964,310 - Pf6N2E2_4266 0.71 +0.1
4,964,310 - Pf6N2E2_4266 0.71 +1.3
4,964,310 - Pf6N2E2_4266 0.71 -0.1
4,964,335 + Pf6N2E2_4266 0.73 -0.5
4,964,336 - Pf6N2E2_4266 0.73 +0.0
4,964,395 - Pf6N2E2_4266 0.79 -0.1
4,964,738 + Pf6N2E2_4267 0.31 -0.6
4,964,738 + Pf6N2E2_4267 0.31 -0.7
4,964,738 + Pf6N2E2_4267 0.31 -1.7
4,964,738 + Pf6N2E2_4267 0.31 -1.6
4,964,739 - Pf6N2E2_4267 0.31 -0.6
4,964,739 - Pf6N2E2_4267 0.31 -0.8
4,964,739 - Pf6N2E2_4267 0.31 -0.4
4,964,739 - Pf6N2E2_4267 0.31 -0.9
4,964,739 - Pf6N2E2_4267 0.31 -1.2
4,964,739 - Pf6N2E2_4267 0.31 +0.1
4,964,739 - Pf6N2E2_4267 0.31 -2.5
4,964,739 - Pf6N2E2_4267 0.31 -2.2
4,964,817 + Pf6N2E2_4267 0.50 -3.0
4,964,817 + Pf6N2E2_4267 0.50 -0.9
4,964,818 - Pf6N2E2_4267 0.50 +0.7
4,964,818 - Pf6N2E2_4267 0.50 -0.1
4,964,818 - Pf6N2E2_4267 0.50 -0.5
4,964,818 - Pf6N2E2_4267 0.50 -0.6
4,964,818 - Pf6N2E2_4267 0.50 -0.8
4,965,061 + -0.5
4,965,062 - +1.2
4,965,062 - +0.8
4,965,062 - +0.9
4,965,062 - +0.5
4,965,062 - +1.1
4,965,062 - +0.9
4,965,083 + -0.1
4,965,084 - +1.3
4,965,084 - +0.7
4,965,096 + -0.6
4,965,097 - +0.9
4,965,104 + -0.8
4,965,104 + -0.2
4,965,104 + +0.2
4,965,104 + +0.1
4,965,105 - +1.1
4,965,105 - +1.2
4,965,105 - +0.9
4,965,156 + -1.1
4,965,265 - Pf6N2E2_4268 0.13 +1.3
4,965,292 + Pf6N2E2_4268 0.16 -0.1
4,965,344 + Pf6N2E2_4268 0.22 -0.7
4,965,344 + Pf6N2E2_4268 0.22 +0.5
4,965,344 + Pf6N2E2_4268 0.22 -0.2
4,965,344 + Pf6N2E2_4268 0.22 +0.2
4,965,344 + Pf6N2E2_4268 0.22 +0.1
4,965,345 - Pf6N2E2_4268 0.23 +1.3
4,965,345 - Pf6N2E2_4268 0.23 +1.8
4,965,345 - Pf6N2E2_4268 0.23 +1.8
4,965,345 - Pf6N2E2_4268 0.23 +0.5
4,965,345 - Pf6N2E2_4268 0.23 +1.5
4,965,478 + Pf6N2E2_4268 0.38 +0.3
4,965,478 + Pf6N2E2_4268 0.38 -0.4
4,965,479 - Pf6N2E2_4268 0.38 +1.9
4,965,479 - Pf6N2E2_4268 0.38 +0.1
4,965,479 - +1.5
4,965,851 + Pf6N2E2_4268 0.81 -0.8
4,965,851 + Pf6N2E2_4268 0.81 +0.4
4,965,854 + Pf6N2E2_4268 0.81 -0.3
4,965,854 + Pf6N2E2_4268 0.81 +0.3
4,965,854 + Pf6N2E2_4268 0.81 -1.1
4,965,854 + Pf6N2E2_4268 0.81 -1.6
4,965,855 - Pf6N2E2_4268 0.81 -1.5
4,965,940 + +0.3
4,965,940 + -0.3
4,965,940 + -0.2
4,965,940 + -1.5
4,965,940 + +1.8
4,965,940 + +0.5
4,965,940 + +0.4
4,965,940 + +0.5
4,965,940 + -0.4
4,965,941 - -0.9

Or see this region's nucleotide sequence