Experiment: RCH2 defined with Zinc 0.032 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_4266 and Pf6N2E2_4267 are separated by 12 nucleotides Pf6N2E2_4267 and Pf6N2E2_4268 are separated by 119 nucleotides
Pf6N2E2_4266 - Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family, at 4,963,628 to 4,964,593
_4266
Pf6N2E2_4267 - FIG00957502: hypothetical protein, at 4,964,606 to 4,965,028
_4267
Pf6N2E2_4268 - Pyridoxal kinase (EC 2.7.1.35), at 4,965,148 to 4,966,020
_4268
Position (kb)
4964
4965
4966 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4963.627 kb on + strand at 4963.627 kb on + strand at 4963.627 kb on + strand at 4963.627 kb on + strand at 4963.627 kb on + strand at 4963.627 kb on + strand at 4963.628 kb on - strand at 4963.628 kb on - strand at 4963.628 kb on - strand at 4963.801 kb on + strand, within Pf6N2E2_4266 at 4963.881 kb on + strand, within Pf6N2E2_4266 at 4963.882 kb on - strand, within Pf6N2E2_4266 at 4963.882 kb on - strand, within Pf6N2E2_4266 at 4963.882 kb on - strand, within Pf6N2E2_4266 at 4963.885 kb on + strand, within Pf6N2E2_4266 at 4963.886 kb on - strand, within Pf6N2E2_4266 at 4964.162 kb on + strand, within Pf6N2E2_4266 at 4964.163 kb on - strand, within Pf6N2E2_4266 at 4964.163 kb on - strand, within Pf6N2E2_4266 at 4964.163 kb on - strand, within Pf6N2E2_4266 at 4964.163 kb on - strand, within Pf6N2E2_4266 at 4964.163 kb on - strand, within Pf6N2E2_4266 at 4964.237 kb on - strand, within Pf6N2E2_4266 at 4964.247 kb on + strand, within Pf6N2E2_4266 at 4964.247 kb on + strand, within Pf6N2E2_4266 at 4964.248 kb on - strand, within Pf6N2E2_4266 at 4964.248 kb on - strand, within Pf6N2E2_4266 at 4964.309 kb on + strand, within Pf6N2E2_4266 at 4964.309 kb on + strand, within Pf6N2E2_4266 at 4964.309 kb on + strand, within Pf6N2E2_4266 at 4964.309 kb on + strand, within Pf6N2E2_4266 at 4964.309 kb on + strand, within Pf6N2E2_4266 at 4964.310 kb on - strand, within Pf6N2E2_4266 at 4964.310 kb on - strand, within Pf6N2E2_4266 at 4964.310 kb on - strand, within Pf6N2E2_4266 at 4964.310 kb on - strand, within Pf6N2E2_4266 at 4964.310 kb on - strand, within Pf6N2E2_4266 at 4964.310 kb on - strand, within Pf6N2E2_4266 at 4964.335 kb on + strand, within Pf6N2E2_4266 at 4964.336 kb on - strand, within Pf6N2E2_4266 at 4964.395 kb on - strand, within Pf6N2E2_4266 at 4964.738 kb on + strand, within Pf6N2E2_4267 at 4964.738 kb on + strand, within Pf6N2E2_4267 at 4964.738 kb on + strand, within Pf6N2E2_4267 at 4964.738 kb on + strand, within Pf6N2E2_4267 at 4964.739 kb on - strand, within Pf6N2E2_4267 at 4964.739 kb on - strand, within Pf6N2E2_4267 at 4964.739 kb on - strand, within Pf6N2E2_4267 at 4964.739 kb on - strand, within Pf6N2E2_4267 at 4964.739 kb on - strand, within Pf6N2E2_4267 at 4964.739 kb on - strand, within Pf6N2E2_4267 at 4964.739 kb on - strand, within Pf6N2E2_4267 at 4964.739 kb on - strand, within Pf6N2E2_4267 at 4964.817 kb on + strand, within Pf6N2E2_4267 at 4964.817 kb on + strand, within Pf6N2E2_4267 at 4964.818 kb on - strand, within Pf6N2E2_4267 at 4964.818 kb on - strand, within Pf6N2E2_4267 at 4964.818 kb on - strand, within Pf6N2E2_4267 at 4964.818 kb on - strand, within Pf6N2E2_4267 at 4964.818 kb on - strand, within Pf6N2E2_4267 at 4965.061 kb on + strand at 4965.062 kb on - strand at 4965.062 kb on - strand at 4965.062 kb on - strand at 4965.062 kb on - strand at 4965.062 kb on - strand at 4965.062 kb on - strand at 4965.083 kb on + strand at 4965.084 kb on - strand at 4965.084 kb on - strand at 4965.096 kb on + strand at 4965.097 kb on - strand at 4965.104 kb on + strand at 4965.104 kb on + strand at 4965.104 kb on + strand at 4965.104 kb on + strand at 4965.105 kb on - strand at 4965.105 kb on - strand at 4965.105 kb on - strand at 4965.156 kb on + strand at 4965.265 kb on - strand, within Pf6N2E2_4268 at 4965.292 kb on + strand, within Pf6N2E2_4268 at 4965.344 kb on + strand, within Pf6N2E2_4268 at 4965.344 kb on + strand, within Pf6N2E2_4268 at 4965.344 kb on + strand, within Pf6N2E2_4268 at 4965.344 kb on + strand, within Pf6N2E2_4268 at 4965.344 kb on + strand, within Pf6N2E2_4268 at 4965.345 kb on - strand, within Pf6N2E2_4268 at 4965.345 kb on - strand, within Pf6N2E2_4268 at 4965.345 kb on - strand, within Pf6N2E2_4268 at 4965.345 kb on - strand, within Pf6N2E2_4268 at 4965.345 kb on - strand, within Pf6N2E2_4268 at 4965.478 kb on + strand, within Pf6N2E2_4268 at 4965.478 kb on + strand, within Pf6N2E2_4268 at 4965.479 kb on - strand, within Pf6N2E2_4268 at 4965.479 kb on - strand, within Pf6N2E2_4268 at 4965.479 kb on - strand at 4965.851 kb on + strand, within Pf6N2E2_4268 at 4965.851 kb on + strand, within Pf6N2E2_4268 at 4965.854 kb on + strand, within Pf6N2E2_4268 at 4965.854 kb on + strand, within Pf6N2E2_4268 at 4965.854 kb on + strand, within Pf6N2E2_4268 at 4965.854 kb on + strand, within Pf6N2E2_4268 at 4965.855 kb on - strand, within Pf6N2E2_4268 at 4965.940 kb on + strand at 4965.940 kb on + strand at 4965.940 kb on + strand at 4965.940 kb on + strand at 4965.940 kb on + strand at 4965.940 kb on + strand at 4965.940 kb on + strand at 4965.940 kb on + strand at 4965.940 kb on + strand at 4965.941 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 defined with Zinc 0.032 mM remove 4,963,627 + -0.3 4,963,627 + -0.1 4,963,627 + -0.5 4,963,627 + +0.6 4,963,627 + -0.6 4,963,627 + +0.8 4,963,628 - -0.6 4,963,628 - -0.2 4,963,628 - -0.5 4,963,801 + Pf6N2E2_4266 0.18 +0.4 4,963,881 + Pf6N2E2_4266 0.26 -0.2 4,963,882 - Pf6N2E2_4266 0.26 -0.1 4,963,882 - Pf6N2E2_4266 0.26 -0.2 4,963,882 - Pf6N2E2_4266 0.26 -0.8 4,963,885 + Pf6N2E2_4266 0.27 -0.6 4,963,886 - Pf6N2E2_4266 0.27 +0.9 4,964,162 + Pf6N2E2_4266 0.55 +0.4 4,964,163 - Pf6N2E2_4266 0.55 +0.3 4,964,163 - Pf6N2E2_4266 0.55 -0.6 4,964,163 - Pf6N2E2_4266 0.55 -1.0 4,964,163 - Pf6N2E2_4266 0.55 -0.5 4,964,163 - Pf6N2E2_4266 0.55 -0.5 4,964,237 - Pf6N2E2_4266 0.63 +0.7 4,964,247 + Pf6N2E2_4266 0.64 +1.5 4,964,247 + Pf6N2E2_4266 0.64 -0.9 4,964,248 - Pf6N2E2_4266 0.64 +0.4 4,964,248 - Pf6N2E2_4266 0.64 -0.3 4,964,309 + Pf6N2E2_4266 0.70 -0.7 4,964,309 + Pf6N2E2_4266 0.70 -0.1 4,964,309 + Pf6N2E2_4266 0.70 -1.6 4,964,309 + Pf6N2E2_4266 0.70 +0.8 4,964,309 + Pf6N2E2_4266 0.70 -0.5 4,964,310 - Pf6N2E2_4266 0.71 +0.7 4,964,310 - Pf6N2E2_4266 0.71 +0.2 4,964,310 - Pf6N2E2_4266 0.71 -0.6 4,964,310 - Pf6N2E2_4266 0.71 +0.1 4,964,310 - Pf6N2E2_4266 0.71 +1.3 4,964,310 - Pf6N2E2_4266 0.71 -0.1 4,964,335 + Pf6N2E2_4266 0.73 -0.5 4,964,336 - Pf6N2E2_4266 0.73 +0.0 4,964,395 - Pf6N2E2_4266 0.79 -0.1 4,964,738 + Pf6N2E2_4267 0.31 -0.6 4,964,738 + Pf6N2E2_4267 0.31 -0.7 4,964,738 + Pf6N2E2_4267 0.31 -1.7 4,964,738 + Pf6N2E2_4267 0.31 -1.6 4,964,739 - Pf6N2E2_4267 0.31 -0.6 4,964,739 - Pf6N2E2_4267 0.31 -0.8 4,964,739 - Pf6N2E2_4267 0.31 -0.4 4,964,739 - Pf6N2E2_4267 0.31 -0.9 4,964,739 - Pf6N2E2_4267 0.31 -1.2 4,964,739 - Pf6N2E2_4267 0.31 +0.1 4,964,739 - Pf6N2E2_4267 0.31 -2.5 4,964,739 - Pf6N2E2_4267 0.31 -2.2 4,964,817 + Pf6N2E2_4267 0.50 -3.0 4,964,817 + Pf6N2E2_4267 0.50 -0.9 4,964,818 - Pf6N2E2_4267 0.50 +0.7 4,964,818 - Pf6N2E2_4267 0.50 -0.1 4,964,818 - Pf6N2E2_4267 0.50 -0.5 4,964,818 - Pf6N2E2_4267 0.50 -0.6 4,964,818 - Pf6N2E2_4267 0.50 -0.8 4,965,061 + -0.5 4,965,062 - +1.2 4,965,062 - +0.8 4,965,062 - +0.9 4,965,062 - +0.5 4,965,062 - +1.1 4,965,062 - +0.9 4,965,083 + -0.1 4,965,084 - +1.3 4,965,084 - +0.7 4,965,096 + -0.6 4,965,097 - +0.9 4,965,104 + -0.8 4,965,104 + -0.2 4,965,104 + +0.2 4,965,104 + +0.1 4,965,105 - +1.1 4,965,105 - +1.2 4,965,105 - +0.9 4,965,156 + -1.1 4,965,265 - Pf6N2E2_4268 0.13 +1.3 4,965,292 + Pf6N2E2_4268 0.16 -0.1 4,965,344 + Pf6N2E2_4268 0.22 -0.7 4,965,344 + Pf6N2E2_4268 0.22 +0.5 4,965,344 + Pf6N2E2_4268 0.22 -0.2 4,965,344 + Pf6N2E2_4268 0.22 +0.2 4,965,344 + Pf6N2E2_4268 0.22 +0.1 4,965,345 - Pf6N2E2_4268 0.23 +1.3 4,965,345 - Pf6N2E2_4268 0.23 +1.8 4,965,345 - Pf6N2E2_4268 0.23 +1.8 4,965,345 - Pf6N2E2_4268 0.23 +0.5 4,965,345 - Pf6N2E2_4268 0.23 +1.5 4,965,478 + Pf6N2E2_4268 0.38 +0.3 4,965,478 + Pf6N2E2_4268 0.38 -0.4 4,965,479 - Pf6N2E2_4268 0.38 +1.9 4,965,479 - Pf6N2E2_4268 0.38 +0.1 4,965,479 - +1.5 4,965,851 + Pf6N2E2_4268 0.81 -0.8 4,965,851 + Pf6N2E2_4268 0.81 +0.4 4,965,854 + Pf6N2E2_4268 0.81 -0.3 4,965,854 + Pf6N2E2_4268 0.81 +0.3 4,965,854 + Pf6N2E2_4268 0.81 -1.1 4,965,854 + Pf6N2E2_4268 0.81 -1.6 4,965,855 - Pf6N2E2_4268 0.81 -1.5 4,965,940 + +0.3 4,965,940 + -0.3 4,965,940 + -0.2 4,965,940 + -1.5 4,965,940 + +1.8 4,965,940 + +0.5 4,965,940 + +0.4 4,965,940 + +0.5 4,965,940 + -0.4 4,965,941 - -0.9
Or see this region's nucleotide sequence