Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14580

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS14575 and BPHYT_RS14580 are separated by 330 nucleotidesBPHYT_RS14580 and BPHYT_RS14585 are separated by 243 nucleotidesBPHYT_RS14585 and BPHYT_RS14590 are separated by 102 nucleotides BPHYT_RS14575: BPHYT_RS14575 - hypothetical protein, at 3,319,137 to 3,319,913 _RS14575 BPHYT_RS14580: BPHYT_RS14580 - ATP-dependent DNA helicase, at 3,320,244 to 3,322,406 _RS14580 BPHYT_RS14585: BPHYT_RS14585 - hypothetical protein, at 3,322,650 to 3,322,913 _RS14585 BPHYT_RS14590: BPHYT_RS14590 - hypothetical protein, at 3,323,016 to 3,323,462 _RS14590 Position (kb) 3320 3321 3322 3323Strain fitness (log2 ratio) -1 0 1 2 3 4at 3319.339 kb on - strand, within BPHYT_RS14575at 3319.566 kb on - strand, within BPHYT_RS14575at 3319.635 kb on + strand, within BPHYT_RS14575at 3319.636 kb on - strand, within BPHYT_RS14575at 3319.721 kb on + strand, within BPHYT_RS14575at 3319.813 kb on - strand, within BPHYT_RS14575at 3319.934 kb on + strandat 3319.934 kb on + strandat 3319.935 kb on - strandat 3319.935 kb on - strandat 3319.978 kb on + strandat 3320.018 kb on - strandat 3320.018 kb on - strandat 3320.031 kb on - strandat 3320.031 kb on - strandat 3320.207 kb on + strandat 3320.220 kb on + strandat 3320.220 kb on + strandat 3320.220 kb on + strandat 3320.221 kb on - strandat 3320.221 kb on - strandat 3320.353 kb on + strandat 3320.353 kb on + strandat 3320.353 kb on + strandat 3320.354 kb on - strandat 3320.354 kb on - strandat 3320.354 kb on - strandat 3320.426 kb on + strandat 3320.427 kb on - strandat 3320.427 kb on - strandat 3320.447 kb on - strandat 3320.468 kb on + strand, within BPHYT_RS14580at 3320.468 kb on + strand, within BPHYT_RS14580at 3320.503 kb on + strand, within BPHYT_RS14580at 3320.503 kb on + strand, within BPHYT_RS14580at 3320.504 kb on - strand, within BPHYT_RS14580at 3320.504 kb on - strand, within BPHYT_RS14580at 3320.504 kb on - strand, within BPHYT_RS14580at 3320.737 kb on + strand, within BPHYT_RS14580at 3320.737 kb on + strand, within BPHYT_RS14580at 3320.737 kb on + strand, within BPHYT_RS14580at 3320.737 kb on + strand, within BPHYT_RS14580at 3320.738 kb on - strand, within BPHYT_RS14580at 3320.738 kb on - strand, within BPHYT_RS14580at 3320.738 kb on - strand, within BPHYT_RS14580at 3320.738 kb on - strand, within BPHYT_RS14580at 3320.738 kb on - strand, within BPHYT_RS14580at 3320.738 kb on - strand, within BPHYT_RS14580at 3320.738 kb on - strand, within BPHYT_RS14580at 3320.822 kb on - strand, within BPHYT_RS14580at 3320.822 kb on - strand, within BPHYT_RS14580at 3320.873 kb on - strand, within BPHYT_RS14580at 3320.873 kb on - strand, within BPHYT_RS14580at 3321.168 kb on - strand, within BPHYT_RS14580at 3321.168 kb on - strand, within BPHYT_RS14580at 3321.168 kb on - strand, within BPHYT_RS14580at 3321.433 kb on + strandat 3321.433 kb on + strand, within BPHYT_RS14580at 3321.523 kb on + strand, within BPHYT_RS14580at 3321.523 kb on + strand, within BPHYT_RS14580at 3321.633 kb on + strand, within BPHYT_RS14580at 3321.751 kb on + strand, within BPHYT_RS14580at 3321.752 kb on - strand, within BPHYT_RS14580at 3322.286 kb on - strandat 3322.447 kb on + strandat 3322.452 kb on + strandat 3322.454 kb on + strandat 3322.460 kb on + strandat 3322.651 kb on + strandat 3322.652 kb on - strandat 3322.805 kb on + strand, within BPHYT_RS14585at 3322.830 kb on - strand, within BPHYT_RS14585at 3322.918 kb on + strandat 3323.017 kb on + strandat 3323.017 kb on + strandat 3323.017 kb on + strandat 3323.143 kb on + strand, within BPHYT_RS14590at 3323.144 kb on - strand, within BPHYT_RS14590at 3323.144 kb on - strand, within BPHYT_RS14590at 3323.144 kb on - strand, within BPHYT_RS14590

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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3,319,339 - BPHYT_RS14575 0.26 -0.8
3,319,566 - BPHYT_RS14575 0.55 -0.0
3,319,635 + BPHYT_RS14575 0.64 -0.3
3,319,636 - BPHYT_RS14575 0.64 -0.7
3,319,721 + BPHYT_RS14575 0.75 +0.1
3,319,813 - BPHYT_RS14575 0.87 +0.3
3,319,934 + -0.7
3,319,934 + +0.1
3,319,935 - -0.3
3,319,935 - -0.8
3,319,978 + +0.1
3,320,018 - +0.8
3,320,018 - +0.2
3,320,031 - +1.1
3,320,031 - +0.0
3,320,207 + +0.3
3,320,220 + +0.3
3,320,220 + -0.0
3,320,220 + -1.0
3,320,221 - +2.7
3,320,221 - -0.6
3,320,353 + +0.8
3,320,353 + -0.7
3,320,353 + -0.3
3,320,354 - +0.6
3,320,354 - -0.2
3,320,354 - -0.0
3,320,426 + -0.5
3,320,427 - -0.0
3,320,427 - +1.9
3,320,447 - +0.5
3,320,468 + BPHYT_RS14580 0.10 +1.2
3,320,468 + BPHYT_RS14580 0.10 -0.1
3,320,503 + BPHYT_RS14580 0.12 +1.5
3,320,503 + BPHYT_RS14580 0.12 +4.1
3,320,504 - BPHYT_RS14580 0.12 -0.2
3,320,504 - BPHYT_RS14580 0.12 +0.9
3,320,504 - BPHYT_RS14580 0.12 +0.9
3,320,737 + BPHYT_RS14580 0.23 +0.3
3,320,737 + BPHYT_RS14580 0.23 +0.7
3,320,737 + BPHYT_RS14580 0.23 +0.4
3,320,737 + BPHYT_RS14580 0.23 +0.3
3,320,738 - BPHYT_RS14580 0.23 -0.7
3,320,738 - BPHYT_RS14580 0.23 +0.1
3,320,738 - BPHYT_RS14580 0.23 +0.7
3,320,738 - BPHYT_RS14580 0.23 -0.5
3,320,738 - BPHYT_RS14580 0.23 +0.0
3,320,738 - BPHYT_RS14580 0.23 +1.0
3,320,738 - BPHYT_RS14580 0.23 -0.6
3,320,822 - BPHYT_RS14580 0.27 +0.3
3,320,822 - BPHYT_RS14580 0.27 +0.2
3,320,873 - BPHYT_RS14580 0.29 +0.1
3,320,873 - BPHYT_RS14580 0.29 -0.4
3,321,168 - BPHYT_RS14580 0.43 +1.0
3,321,168 - BPHYT_RS14580 0.43 -0.7
3,321,168 - BPHYT_RS14580 0.43 -1.3
3,321,433 + -0.3
3,321,433 + BPHYT_RS14580 0.55 -0.2
3,321,523 + BPHYT_RS14580 0.59 +0.8
3,321,523 + BPHYT_RS14580 0.59 +0.6
3,321,633 + BPHYT_RS14580 0.64 +0.6
3,321,751 + BPHYT_RS14580 0.70 +0.1
3,321,752 - BPHYT_RS14580 0.70 +0.3
3,322,286 - -0.8
3,322,447 + +0.3
3,322,452 + -1.1
3,322,454 + +1.4
3,322,460 + -0.0
3,322,651 + +0.2
3,322,652 - -0.1
3,322,805 + BPHYT_RS14585 0.59 +0.4
3,322,830 - BPHYT_RS14585 0.68 -0.3
3,322,918 + -0.2
3,323,017 + -0.9
3,323,017 + -0.9
3,323,017 + -1.2
3,323,143 + BPHYT_RS14590 0.28 -0.6
3,323,144 - BPHYT_RS14590 0.29 +0.0
3,323,144 - BPHYT_RS14590 0.29 -0.5
3,323,144 - BPHYT_RS14590 0.29 +0.8

Or see this region's nucleotide sequence