Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS14575 and BPHYT_RS14580 are separated by 330 nucleotides BPHYT_RS14580 and BPHYT_RS14585 are separated by 243 nucleotides BPHYT_RS14585 and BPHYT_RS14590 are separated by 102 nucleotides
BPHYT_RS14575: BPHYT_RS14575 - hypothetical protein, at 3,319,137 to 3,319,913
_RS14575
BPHYT_RS14580: BPHYT_RS14580 - ATP-dependent DNA helicase, at 3,320,244 to 3,322,406
_RS14580
BPHYT_RS14585: BPHYT_RS14585 - hypothetical protein, at 3,322,650 to 3,322,913
_RS14585
BPHYT_RS14590: BPHYT_RS14590 - hypothetical protein, at 3,323,016 to 3,323,462
_RS14590
Position (kb)
3320
3321
3322
3323 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 3319.339 kb on - strand, within BPHYT_RS14575 at 3319.566 kb on - strand, within BPHYT_RS14575 at 3319.635 kb on + strand, within BPHYT_RS14575 at 3319.636 kb on - strand, within BPHYT_RS14575 at 3319.721 kb on + strand, within BPHYT_RS14575 at 3319.813 kb on - strand, within BPHYT_RS14575 at 3319.934 kb on + strand at 3319.934 kb on + strand at 3319.935 kb on - strand at 3319.935 kb on - strand at 3319.978 kb on + strand at 3320.018 kb on - strand at 3320.018 kb on - strand at 3320.031 kb on - strand at 3320.031 kb on - strand at 3320.207 kb on + strand at 3320.220 kb on + strand at 3320.220 kb on + strand at 3320.220 kb on + strand at 3320.221 kb on - strand at 3320.221 kb on - strand at 3320.353 kb on + strand at 3320.353 kb on + strand at 3320.353 kb on + strand at 3320.354 kb on - strand at 3320.354 kb on - strand at 3320.354 kb on - strand at 3320.426 kb on + strand at 3320.427 kb on - strand at 3320.427 kb on - strand at 3320.447 kb on - strand at 3320.468 kb on + strand, within BPHYT_RS14580 at 3320.468 kb on + strand, within BPHYT_RS14580 at 3320.503 kb on + strand, within BPHYT_RS14580 at 3320.503 kb on + strand, within BPHYT_RS14580 at 3320.504 kb on - strand, within BPHYT_RS14580 at 3320.504 kb on - strand, within BPHYT_RS14580 at 3320.504 kb on - strand, within BPHYT_RS14580 at 3320.737 kb on + strand, within BPHYT_RS14580 at 3320.737 kb on + strand, within BPHYT_RS14580 at 3320.737 kb on + strand, within BPHYT_RS14580 at 3320.737 kb on + strand, within BPHYT_RS14580 at 3320.738 kb on - strand, within BPHYT_RS14580 at 3320.738 kb on - strand, within BPHYT_RS14580 at 3320.738 kb on - strand, within BPHYT_RS14580 at 3320.738 kb on - strand, within BPHYT_RS14580 at 3320.738 kb on - strand, within BPHYT_RS14580 at 3320.738 kb on - strand, within BPHYT_RS14580 at 3320.738 kb on - strand, within BPHYT_RS14580 at 3320.822 kb on - strand, within BPHYT_RS14580 at 3320.822 kb on - strand, within BPHYT_RS14580 at 3320.873 kb on - strand, within BPHYT_RS14580 at 3320.873 kb on - strand, within BPHYT_RS14580 at 3321.168 kb on - strand, within BPHYT_RS14580 at 3321.168 kb on - strand, within BPHYT_RS14580 at 3321.168 kb on - strand, within BPHYT_RS14580 at 3321.433 kb on + strand at 3321.433 kb on + strand, within BPHYT_RS14580 at 3321.523 kb on + strand, within BPHYT_RS14580 at 3321.523 kb on + strand, within BPHYT_RS14580 at 3321.633 kb on + strand, within BPHYT_RS14580 at 3321.751 kb on + strand, within BPHYT_RS14580 at 3321.752 kb on - strand, within BPHYT_RS14580 at 3322.286 kb on - strand at 3322.447 kb on + strand at 3322.452 kb on + strand at 3322.454 kb on + strand at 3322.460 kb on + strand at 3322.651 kb on + strand at 3322.652 kb on - strand at 3322.805 kb on + strand, within BPHYT_RS14585 at 3322.830 kb on - strand, within BPHYT_RS14585 at 3322.918 kb on + strand at 3323.017 kb on + strand at 3323.017 kb on + strand at 3323.017 kb on + strand at 3323.143 kb on + strand, within BPHYT_RS14590 at 3323.144 kb on - strand, within BPHYT_RS14590 at 3323.144 kb on - strand, within BPHYT_RS14590 at 3323.144 kb on - strand, within BPHYT_RS14590
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 3,319,339 - BPHYT_RS14575 0.26 -0.8 3,319,566 - BPHYT_RS14575 0.55 -0.0 3,319,635 + BPHYT_RS14575 0.64 -0.3 3,319,636 - BPHYT_RS14575 0.64 -0.7 3,319,721 + BPHYT_RS14575 0.75 +0.1 3,319,813 - BPHYT_RS14575 0.87 +0.3 3,319,934 + -0.7 3,319,934 + +0.1 3,319,935 - -0.3 3,319,935 - -0.8 3,319,978 + +0.1 3,320,018 - +0.8 3,320,018 - +0.2 3,320,031 - +1.1 3,320,031 - +0.0 3,320,207 + +0.3 3,320,220 + +0.3 3,320,220 + -0.0 3,320,220 + -1.0 3,320,221 - +2.7 3,320,221 - -0.6 3,320,353 + +0.8 3,320,353 + -0.7 3,320,353 + -0.3 3,320,354 - +0.6 3,320,354 - -0.2 3,320,354 - -0.0 3,320,426 + -0.5 3,320,427 - -0.0 3,320,427 - +1.9 3,320,447 - +0.5 3,320,468 + BPHYT_RS14580 0.10 +1.2 3,320,468 + BPHYT_RS14580 0.10 -0.1 3,320,503 + BPHYT_RS14580 0.12 +1.5 3,320,503 + BPHYT_RS14580 0.12 +4.1 3,320,504 - BPHYT_RS14580 0.12 -0.2 3,320,504 - BPHYT_RS14580 0.12 +0.9 3,320,504 - BPHYT_RS14580 0.12 +0.9 3,320,737 + BPHYT_RS14580 0.23 +0.3 3,320,737 + BPHYT_RS14580 0.23 +0.7 3,320,737 + BPHYT_RS14580 0.23 +0.4 3,320,737 + BPHYT_RS14580 0.23 +0.3 3,320,738 - BPHYT_RS14580 0.23 -0.7 3,320,738 - BPHYT_RS14580 0.23 +0.1 3,320,738 - BPHYT_RS14580 0.23 +0.7 3,320,738 - BPHYT_RS14580 0.23 -0.5 3,320,738 - BPHYT_RS14580 0.23 +0.0 3,320,738 - BPHYT_RS14580 0.23 +1.0 3,320,738 - BPHYT_RS14580 0.23 -0.6 3,320,822 - BPHYT_RS14580 0.27 +0.3 3,320,822 - BPHYT_RS14580 0.27 +0.2 3,320,873 - BPHYT_RS14580 0.29 +0.1 3,320,873 - BPHYT_RS14580 0.29 -0.4 3,321,168 - BPHYT_RS14580 0.43 +1.0 3,321,168 - BPHYT_RS14580 0.43 -0.7 3,321,168 - BPHYT_RS14580 0.43 -1.3 3,321,433 + -0.3 3,321,433 + BPHYT_RS14580 0.55 -0.2 3,321,523 + BPHYT_RS14580 0.59 +0.8 3,321,523 + BPHYT_RS14580 0.59 +0.6 3,321,633 + BPHYT_RS14580 0.64 +0.6 3,321,751 + BPHYT_RS14580 0.70 +0.1 3,321,752 - BPHYT_RS14580 0.70 +0.3 3,322,286 - -0.8 3,322,447 + +0.3 3,322,452 + -1.1 3,322,454 + +1.4 3,322,460 + -0.0 3,322,651 + +0.2 3,322,652 - -0.1 3,322,805 + BPHYT_RS14585 0.59 +0.4 3,322,830 - BPHYT_RS14585 0.68 -0.3 3,322,918 + -0.2 3,323,017 + -0.9 3,323,017 + -0.9 3,323,017 + -1.2 3,323,143 + BPHYT_RS14590 0.28 -0.6 3,323,144 - BPHYT_RS14590 0.29 +0.0 3,323,144 - BPHYT_RS14590 0.29 -0.5 3,323,144 - BPHYT_RS14590 0.29 +0.8
Or see this region's nucleotide sequence