Experiment: nitrogen source nitrite 0.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20660 and ABZR87_RS20665 are separated by 2 nucleotides ABZR87_RS20665 and ABZR87_RS20670 are separated by 12 nucleotides ABZR87_RS20670 and ABZR87_RS20675 are separated by 4 nucleotides ABZR87_RS20675 and ABZR87_RS20680 are separated by 32 nucleotides
ABZR87_RS20660: ABZR87_RS20660 - SDR family oxidoreductase, at 1,023,925 to 1,024,728
_RS20660
ABZR87_RS20665: ABZR87_RS20665 - IclR family transcriptional regulator, at 1,024,731 to 1,025,558
_RS20665
ABZR87_RS20670: ABZR87_RS20670 - alpha/beta hydrolase, at 1,025,571 to 1,026,473
_RS20670
ABZR87_RS20675: ABZR87_RS20675 - cupin domain-containing protein, at 1,026,478 to 1,027,014
_RS20675
ABZR87_RS20680: ABZR87_RS20680 - SDR family oxidoreductase, at 1,027,047 to 1,027,820
_RS20680
Position (kb) 1025
1026
1027 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1024.693 kb on + strand at 1024.694 kb on - strand at 1024.786 kb on + strand at 1024.786 kb on + strand at 1024.964 kb on - strand, within ABZR87_RS20665 at 1024.964 kb on - strand, within ABZR87_RS20665 at 1024.964 kb on - strand, within ABZR87_RS20665 at 1025.057 kb on - strand, within ABZR87_RS20665 at 1025.188 kb on + strand, within ABZR87_RS20665 at 1025.300 kb on - strand, within ABZR87_RS20665 at 1025.518 kb on + strand at 1025.519 kb on - strand at 1025.519 kb on - strand at 1025.558 kb on + strand at 1025.558 kb on + strand at 1025.558 kb on + strand at 1025.559 kb on - strand at 1025.559 kb on - strand at 1025.639 kb on + strand at 1025.639 kb on + strand at 1025.639 kb on + strand at 1025.640 kb on - strand at 1025.640 kb on - strand at 1025.641 kb on + strand at 1025.641 kb on + strand at 1025.642 kb on - strand at 1025.642 kb on - strand at 1025.724 kb on - strand, within ABZR87_RS20670 at 1025.785 kb on + strand, within ABZR87_RS20670 at 1025.785 kb on + strand, within ABZR87_RS20670 at 1025.785 kb on + strand, within ABZR87_RS20670 at 1025.786 kb on - strand, within ABZR87_RS20670 at 1026.079 kb on + strand, within ABZR87_RS20670 at 1026.080 kb on - strand, within ABZR87_RS20670 at 1026.080 kb on - strand, within ABZR87_RS20670 at 1026.173 kb on - strand, within ABZR87_RS20670 at 1026.221 kb on - strand, within ABZR87_RS20670 at 1026.516 kb on - strand at 1026.836 kb on + strand, within ABZR87_RS20675 at 1026.836 kb on + strand, within ABZR87_RS20675 at 1026.836 kb on + strand, within ABZR87_RS20675 at 1026.836 kb on + strand, within ABZR87_RS20675 at 1026.857 kb on + strand, within ABZR87_RS20675 at 1026.903 kb on - strand, within ABZR87_RS20675 at 1027.019 kb on + strand at 1027.020 kb on - strand at 1027.048 kb on + strand at 1027.048 kb on + strand at 1027.049 kb on - strand at 1027.211 kb on - strand, within ABZR87_RS20680 at 1027.211 kb on - strand, within ABZR87_RS20680 at 1027.211 kb on - strand, within ABZR87_RS20680
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM remove 1,024,693 + -0.6 1,024,694 - +0.9 1,024,786 + -0.3 1,024,786 + -1.6 1,024,964 - ABZR87_RS20665 0.28 +1.6 1,024,964 - ABZR87_RS20665 0.28 +0.3 1,024,964 - ABZR87_RS20665 0.28 +1.3 1,025,057 - ABZR87_RS20665 0.39 +0.9 1,025,188 + ABZR87_RS20665 0.55 -0.9 1,025,300 - ABZR87_RS20665 0.69 +0.9 1,025,518 + +1.6 1,025,519 - -0.0 1,025,519 - +0.9 1,025,558 + +0.3 1,025,558 + +1.1 1,025,558 + +0.9 1,025,559 - -0.5 1,025,559 - -3.1 1,025,639 + +0.9 1,025,639 + +0.7 1,025,639 + -0.9 1,025,640 - -0.0 1,025,640 - +0.3 1,025,641 + +0.3 1,025,641 + +0.9 1,025,642 - +0.4 1,025,642 - -0.1 1,025,724 - ABZR87_RS20670 0.17 -0.5 1,025,785 + ABZR87_RS20670 0.24 -2.1 1,025,785 + ABZR87_RS20670 0.24 -0.7 1,025,785 + ABZR87_RS20670 0.24 -0.3 1,025,786 - ABZR87_RS20670 0.24 -0.1 1,026,079 + ABZR87_RS20670 0.56 -4.3 1,026,080 - ABZR87_RS20670 0.56 -0.1 1,026,080 - ABZR87_RS20670 0.56 -1.8 1,026,173 - ABZR87_RS20670 0.67 +0.6 1,026,221 - ABZR87_RS20670 0.72 -0.5 1,026,516 - +0.8 1,026,836 + ABZR87_RS20675 0.67 +0.4 1,026,836 + ABZR87_RS20675 0.67 +0.2 1,026,836 + ABZR87_RS20675 0.67 +0.6 1,026,836 + ABZR87_RS20675 0.67 -0.0 1,026,857 + ABZR87_RS20675 0.71 -1.5 1,026,903 - ABZR87_RS20675 0.79 +0.9 1,027,019 + -1.3 1,027,020 - -0.6 1,027,048 + +0.7 1,027,048 + -1.2 1,027,049 - +1.1 1,027,211 - ABZR87_RS20680 0.21 -0.8 1,027,211 - ABZR87_RS20680 0.21 +0.4 1,027,211 - ABZR87_RS20680 0.21 -0.3
Or see this region's nucleotide sequence