Experiment: nitrogen source nitrite 0.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20135 and ABZR87_RS20140 are separated by 25 nucleotides ABZR87_RS20140 and ABZR87_RS20145 are separated by 11 nucleotides ABZR87_RS20145 and ABZR87_RS20150 are separated by 58 nucleotides
ABZR87_RS20135: ABZR87_RS20135 - M15 family metallopeptidase, at 899,067 to 899,924
_RS20135
ABZR87_RS20140: ABZR87_RS20140 - PAAR domain-containing protein, at 899,950 to 900,219
_RS20140
ABZR87_RS20145: ABZR87_RS20145 - hypothetical protein, at 900,231 to 901,715
_RS20145
ABZR87_RS20150: ABZR87_RS20150 - type VI secretion system membrane subunit TssM, at 901,774 to 905,724
_RS20150
Position (kb) 900
901
902 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 899.287 kb on + strand, within ABZR87_RS20135 at 899.577 kb on + strand, within ABZR87_RS20135 at 899.578 kb on - strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.703 kb on + strand, within ABZR87_RS20135 at 899.704 kb on - strand, within ABZR87_RS20135 at 899.704 kb on - strand, within ABZR87_RS20135 at 899.704 kb on - strand, within ABZR87_RS20135 at 899.704 kb on - strand, within ABZR87_RS20135 at 899.704 kb on - strand, within ABZR87_RS20135 at 899.803 kb on - strand, within ABZR87_RS20135 at 900.094 kb on - strand, within ABZR87_RS20140 at 900.094 kb on - strand, within ABZR87_RS20140 at 900.354 kb on + strand at 900.355 kb on - strand at 900.355 kb on - strand at 900.355 kb on - strand at 900.355 kb on - strand at 900.355 kb on - strand at 900.605 kb on + strand, within ABZR87_RS20145 at 900.605 kb on + strand, within ABZR87_RS20145 at 901.342 kb on + strand, within ABZR87_RS20145 at 901.342 kb on + strand, within ABZR87_RS20145 at 901.342 kb on + strand, within ABZR87_RS20145 at 901.343 kb on - strand, within ABZR87_RS20145 at 901.343 kb on - strand, within ABZR87_RS20145 at 901.575 kb on + strand at 901.576 kb on - strand at 901.576 kb on - strand at 901.576 kb on - strand at 901.576 kb on - strand at 901.579 kb on + strand at 901.579 kb on + strand at 901.579 kb on + strand at 901.579 kb on + strand at 901.579 kb on + strand at 901.580 kb on - strand at 901.580 kb on - strand at 901.580 kb on - strand at 901.580 kb on - strand at 901.659 kb on - strand at 901.659 kb on - strand at 901.846 kb on + strand at 901.936 kb on + strand at 901.936 kb on + strand at 901.936 kb on + strand at 901.936 kb on + strand at 901.936 kb on + strand at 901.937 kb on - strand at 901.937 kb on - strand at 901.937 kb on - strand at 901.937 kb on - strand at 902.129 kb on - strand at 902.143 kb on + strand at 902.144 kb on - strand at 902.144 kb on - strand at 902.144 kb on - strand at 902.144 kb on - strand at 902.144 kb on - strand at 902.178 kb on + strand, within ABZR87_RS20150 at 902.179 kb on - strand, within ABZR87_RS20150 at 902.260 kb on - strand, within ABZR87_RS20150 at 902.375 kb on - strand, within ABZR87_RS20150 at 902.513 kb on + strand, within ABZR87_RS20150 at 902.513 kb on + strand, within ABZR87_RS20150 at 902.514 kb on - strand, within ABZR87_RS20150 at 902.514 kb on - strand, within ABZR87_RS20150 at 902.514 kb on - strand, within ABZR87_RS20150 at 902.527 kb on + strand, within ABZR87_RS20150 at 902.528 kb on - strand, within ABZR87_RS20150 at 902.528 kb on - strand, within ABZR87_RS20150 at 902.528 kb on - strand, within ABZR87_RS20150 at 902.528 kb on - strand, within ABZR87_RS20150
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM remove 899,287 + ABZR87_RS20135 0.26 -0.5 899,577 + ABZR87_RS20135 0.59 -0.5 899,578 - ABZR87_RS20135 0.60 -3.1 899,703 + ABZR87_RS20135 0.74 +0.0 899,703 + ABZR87_RS20135 0.74 +0.1 899,703 + ABZR87_RS20135 0.74 +0.0 899,703 + ABZR87_RS20135 0.74 +0.7 899,703 + ABZR87_RS20135 0.74 -1.2 899,703 + ABZR87_RS20135 0.74 +1.2 899,703 + ABZR87_RS20135 0.74 -1.2 899,704 - ABZR87_RS20135 0.74 -0.3 899,704 - ABZR87_RS20135 0.74 -1.1 899,704 - ABZR87_RS20135 0.74 +0.2 899,704 - ABZR87_RS20135 0.74 -0.6 899,704 - ABZR87_RS20135 0.74 +0.0 899,803 - ABZR87_RS20135 0.86 +0.2 900,094 - ABZR87_RS20140 0.53 -3.1 900,094 - ABZR87_RS20140 0.53 +0.6 900,354 + +0.9 900,355 - -2.2 900,355 - +0.6 900,355 - -1.2 900,355 - +2.1 900,355 - -0.6 900,605 + ABZR87_RS20145 0.25 -1.7 900,605 + ABZR87_RS20145 0.25 -1.7 901,342 + ABZR87_RS20145 0.75 -3.0 901,342 + ABZR87_RS20145 0.75 +1.0 901,342 + ABZR87_RS20145 0.75 +4.5 901,343 - ABZR87_RS20145 0.75 -0.7 901,343 - ABZR87_RS20145 0.75 -1.9 901,575 + +0.5 901,576 - +0.3 901,576 - +0.8 901,576 - -2.1 901,576 - +0.6 901,579 + -2.6 901,579 + -0.1 901,579 + +0.6 901,579 + +0.2 901,579 + +0.3 901,580 - +1.9 901,580 - +1.3 901,580 - +0.3 901,580 - -0.1 901,659 - +0.1 901,659 - +1.3 901,846 + -2.1 901,936 + -0.3 901,936 + -0.2 901,936 + -0.8 901,936 + -0.8 901,936 + -0.2 901,937 - -0.6 901,937 - +0.1 901,937 - +1.3 901,937 - -0.2 902,129 - +0.7 902,143 + -1.3 902,144 - -2.6 902,144 - -0.8 902,144 - -0.6 902,144 - +0.7 902,144 - -0.7 902,178 + ABZR87_RS20150 0.10 -0.0 902,179 - ABZR87_RS20150 0.10 +1.4 902,260 - ABZR87_RS20150 0.12 -2.4 902,375 - ABZR87_RS20150 0.15 -0.2 902,513 + ABZR87_RS20150 0.19 -1.9 902,513 + ABZR87_RS20150 0.19 -0.1 902,514 - ABZR87_RS20150 0.19 -0.7 902,514 - ABZR87_RS20150 0.19 -1.8 902,514 - ABZR87_RS20150 0.19 -3.0 902,527 + ABZR87_RS20150 0.19 -0.2 902,528 - ABZR87_RS20150 0.19 -0.0 902,528 - ABZR87_RS20150 0.19 +0.1 902,528 - ABZR87_RS20150 0.19 +1.0 902,528 - ABZR87_RS20150 0.19 +0.3
Or see this region's nucleotide sequence