Experiment: nitrogen source nitrite 0.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16335 and ABZR87_RS16340 are separated by 7 nucleotides ABZR87_RS16340 and ABZR87_RS16345 overlap by 4 nucleotides ABZR87_RS16345 and ABZR87_RS16350 are separated by 108 nucleotides
ABZR87_RS16335: ABZR87_RS16335 - branched-chain amino acid ABC transporter permease, at 17,492 to 18,400
_RS16335
ABZR87_RS16340: ABZR87_RS16340 - ABC transporter ATP-binding protein, at 18,408 to 19,205
_RS16340
ABZR87_RS16345: ABZR87_RS16345 - ABC transporter ATP-binding protein, at 19,202 to 19,927
_RS16345
ABZR87_RS16350: ABZR87_RS16350 - LysR family transcriptional regulator, at 20,036 to 20,908
_RS16350
Position (kb) 19
20 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 18.726 kb on + strand, within ABZR87_RS16340 at 18.726 kb on + strand, within ABZR87_RS16340 at 19.073 kb on + strand, within ABZR87_RS16340 at 19.143 kb on + strand at 19.144 kb on - strand at 19.417 kb on + strand, within ABZR87_RS16345 at 19.417 kb on + strand, within ABZR87_RS16345 at 19.418 kb on - strand, within ABZR87_RS16345 at 19.527 kb on - strand, within ABZR87_RS16345 at 19.572 kb on + strand, within ABZR87_RS16345 at 19.572 kb on + strand, within ABZR87_RS16345 at 19.835 kb on + strand, within ABZR87_RS16345 at 19.836 kb on - strand, within ABZR87_RS16345 at 19.836 kb on - strand, within ABZR87_RS16345 at 19.836 kb on - strand, within ABZR87_RS16345 at 19.836 kb on - strand, within ABZR87_RS16345 at 19.836 kb on - strand, within ABZR87_RS16345 at 19.839 kb on + strand, within ABZR87_RS16345 at 19.839 kb on + strand, within ABZR87_RS16345 at 19.840 kb on - strand, within ABZR87_RS16345 at 19.914 kb on - strand at 19.914 kb on - strand at 19.979 kb on + strand at 19.979 kb on + strand at 20.031 kb on + strand at 20.031 kb on + strand at 20.292 kb on - strand, within ABZR87_RS16350 at 20.316 kb on + strand, within ABZR87_RS16350 at 20.316 kb on + strand, within ABZR87_RS16350 at 20.316 kb on + strand, within ABZR87_RS16350 at 20.316 kb on + strand, within ABZR87_RS16350 at 20.316 kb on + strand, within ABZR87_RS16350 at 20.316 kb on + strand, within ABZR87_RS16350 at 20.316 kb on + strand, within ABZR87_RS16350 at 20.316 kb on + strand, within ABZR87_RS16350 at 20.316 kb on + strand, within ABZR87_RS16350 at 20.317 kb on - strand, within ABZR87_RS16350 at 20.317 kb on - strand, within ABZR87_RS16350 at 20.317 kb on - strand, within ABZR87_RS16350 at 20.317 kb on - strand, within ABZR87_RS16350 at 20.317 kb on - strand, within ABZR87_RS16350 at 20.317 kb on - strand, within ABZR87_RS16350 at 20.317 kb on - strand, within ABZR87_RS16350 at 20.418 kb on + strand, within ABZR87_RS16350 at 20.419 kb on - strand, within ABZR87_RS16350 at 20.419 kb on - strand, within ABZR87_RS16350 at 20.419 kb on - strand, within ABZR87_RS16350 at 20.419 kb on - strand, within ABZR87_RS16350 at 20.629 kb on + strand, within ABZR87_RS16350 at 20.629 kb on + strand, within ABZR87_RS16350 at 20.630 kb on - strand, within ABZR87_RS16350 at 20.630 kb on - strand, within ABZR87_RS16350 at 20.630 kb on - strand, within ABZR87_RS16350 at 20.630 kb on - strand, within ABZR87_RS16350 at 20.630 kb on - strand, within ABZR87_RS16350 at 20.887 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM remove 18,726 + ABZR87_RS16340 0.40 +0.1 18,726 + ABZR87_RS16340 0.40 +0.4 19,073 + ABZR87_RS16340 0.83 +1.6 19,143 + -0.2 19,144 - +0.1 19,417 + ABZR87_RS16345 0.30 -0.8 19,417 + ABZR87_RS16345 0.30 +3.1 19,418 - ABZR87_RS16345 0.30 -1.0 19,527 - ABZR87_RS16345 0.45 -0.2 19,572 + ABZR87_RS16345 0.51 -2.5 19,572 + ABZR87_RS16345 0.51 +2.5 19,835 + ABZR87_RS16345 0.87 -2.7 19,836 - ABZR87_RS16345 0.87 -0.6 19,836 - ABZR87_RS16345 0.87 -1.1 19,836 - ABZR87_RS16345 0.87 +3.1 19,836 - ABZR87_RS16345 0.87 +0.5 19,836 - ABZR87_RS16345 0.87 -2.7 19,839 + ABZR87_RS16345 0.88 +0.6 19,839 + ABZR87_RS16345 0.88 +0.0 19,840 - ABZR87_RS16345 0.88 -1.7 19,914 - -0.6 19,914 - -0.9 19,979 + -0.4 19,979 + -2.4 20,031 + -0.0 20,031 + +0.2 20,292 - ABZR87_RS16350 0.29 +0.7 20,316 + ABZR87_RS16350 0.32 -0.7 20,316 + ABZR87_RS16350 0.32 -0.3 20,316 + ABZR87_RS16350 0.32 +0.0 20,316 + ABZR87_RS16350 0.32 +0.8 20,316 + ABZR87_RS16350 0.32 +0.2 20,316 + ABZR87_RS16350 0.32 -0.8 20,316 + ABZR87_RS16350 0.32 -0.4 20,316 + ABZR87_RS16350 0.32 +0.7 20,316 + ABZR87_RS16350 0.32 -3.0 20,317 - ABZR87_RS16350 0.32 +0.1 20,317 - ABZR87_RS16350 0.32 -0.6 20,317 - ABZR87_RS16350 0.32 -3.7 20,317 - ABZR87_RS16350 0.32 -3.0 20,317 - ABZR87_RS16350 0.32 +1.2 20,317 - ABZR87_RS16350 0.32 +0.2 20,317 - ABZR87_RS16350 0.32 +2.0 20,418 + ABZR87_RS16350 0.44 +0.2 20,419 - ABZR87_RS16350 0.44 +1.2 20,419 - ABZR87_RS16350 0.44 -0.2 20,419 - ABZR87_RS16350 0.44 -1.5 20,419 - ABZR87_RS16350 0.44 -1.5 20,629 + ABZR87_RS16350 0.68 +0.8 20,629 + ABZR87_RS16350 0.68 +0.6 20,630 - ABZR87_RS16350 0.68 +0.5 20,630 - ABZR87_RS16350 0.68 -1.2 20,630 - ABZR87_RS16350 0.68 -1.1 20,630 - ABZR87_RS16350 0.68 -0.5 20,630 - ABZR87_RS16350 0.68 +0.4 20,887 - -0.9
Or see this region's nucleotide sequence