Experiment: nitrogen source nitrite 0.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04395 and ABZR87_RS04400 are separated by 74 nucleotides ABZR87_RS04400 and ABZR87_RS04405 are separated by 54 nucleotides
ABZR87_RS04395: ABZR87_RS04395 - TonB-dependent receptor, at 921,695 to 923,776
_RS04395
ABZR87_RS04400: ABZR87_RS04400 - dienelactone hydrolase family protein, at 923,851 to 924,906
_RS04400
ABZR87_RS04405: ABZR87_RS04405 - chromate resistance protein ChrB domain-containing protein, at 924,961 to 925,923
_RS04405
Position (kb) 923
924
925 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 922.865 kb on + strand, within ABZR87_RS04395 at 922.865 kb on + strand, within ABZR87_RS04395 at 922.865 kb on + strand, within ABZR87_RS04395 at 922.865 kb on + strand, within ABZR87_RS04395 at 922.866 kb on - strand, within ABZR87_RS04395 at 922.866 kb on - strand, within ABZR87_RS04395 at 922.937 kb on + strand, within ABZR87_RS04395 at 923.160 kb on - strand, within ABZR87_RS04395 at 923.318 kb on + strand, within ABZR87_RS04395 at 923.318 kb on + strand, within ABZR87_RS04395 at 923.318 kb on + strand, within ABZR87_RS04395 at 923.319 kb on - strand, within ABZR87_RS04395 at 923.319 kb on - strand, within ABZR87_RS04395 at 923.319 kb on - strand, within ABZR87_RS04395 at 923.319 kb on - strand, within ABZR87_RS04395 at 923.321 kb on + strand, within ABZR87_RS04395 at 923.321 kb on + strand, within ABZR87_RS04395 at 923.322 kb on - strand, within ABZR87_RS04395 at 923.322 kb on - strand, within ABZR87_RS04395 at 923.489 kb on + strand, within ABZR87_RS04395 at 923.490 kb on - strand, within ABZR87_RS04395 at 923.642 kb on + strand at 923.642 kb on + strand at 923.642 kb on + strand at 923.642 kb on + strand at 923.645 kb on + strand at 923.645 kb on + strand at 923.645 kb on + strand at 923.645 kb on + strand at 923.646 kb on - strand at 923.646 kb on - strand at 923.646 kb on - strand at 923.648 kb on + strand at 923.648 kb on + strand at 923.648 kb on + strand at 923.648 kb on + strand at 923.648 kb on + strand at 923.648 kb on + strand at 923.648 kb on + strand at 923.649 kb on - strand at 923.649 kb on - strand at 923.649 kb on - strand at 923.649 kb on - strand at 923.774 kb on + strand at 923.901 kb on + strand at 923.901 kb on + strand at 923.902 kb on - strand at 924.076 kb on + strand, within ABZR87_RS04400 at 924.076 kb on + strand, within ABZR87_RS04400 at 924.076 kb on + strand, within ABZR87_RS04400 at 924.076 kb on + strand, within ABZR87_RS04400 at 924.076 kb on + strand, within ABZR87_RS04400 at 924.076 kb on + strand, within ABZR87_RS04400 at 924.077 kb on - strand, within ABZR87_RS04400 at 924.077 kb on - strand, within ABZR87_RS04400 at 924.077 kb on - strand, within ABZR87_RS04400 at 924.077 kb on - strand, within ABZR87_RS04400 at 924.213 kb on + strand, within ABZR87_RS04400 at 924.214 kb on + strand, within ABZR87_RS04400 at 924.215 kb on - strand, within ABZR87_RS04400 at 924.246 kb on + strand, within ABZR87_RS04400 at 924.454 kb on + strand, within ABZR87_RS04400 at 924.455 kb on - strand, within ABZR87_RS04400 at 924.619 kb on + strand, within ABZR87_RS04400 at 924.619 kb on + strand, within ABZR87_RS04400 at 924.620 kb on - strand, within ABZR87_RS04400 at 924.631 kb on + strand, within ABZR87_RS04400 at 924.658 kb on + strand, within ABZR87_RS04400 at 924.658 kb on + strand, within ABZR87_RS04400 at 924.658 kb on + strand, within ABZR87_RS04400 at 924.658 kb on + strand, within ABZR87_RS04400 at 924.658 kb on + strand, within ABZR87_RS04400 at 924.658 kb on + strand, within ABZR87_RS04400 at 924.658 kb on + strand, within ABZR87_RS04400 at 924.667 kb on + strand, within ABZR87_RS04400 at 924.667 kb on + strand, within ABZR87_RS04400 at 924.668 kb on - strand, within ABZR87_RS04400 at 924.668 kb on - strand, within ABZR87_RS04400 at 924.733 kb on + strand, within ABZR87_RS04400 at 924.733 kb on + strand, within ABZR87_RS04400 at 924.733 kb on + strand, within ABZR87_RS04400 at 924.733 kb on + strand, within ABZR87_RS04400 at 924.734 kb on - strand, within ABZR87_RS04400 at 924.734 kb on - strand, within ABZR87_RS04400 at 924.734 kb on - strand, within ABZR87_RS04400 at 924.734 kb on - strand, within ABZR87_RS04400 at 924.736 kb on + strand, within ABZR87_RS04400 at 924.736 kb on + strand, within ABZR87_RS04400 at 924.761 kb on - strand, within ABZR87_RS04400 at 924.790 kb on + strand, within ABZR87_RS04400 at 924.790 kb on + strand, within ABZR87_RS04400 at 924.791 kb on - strand, within ABZR87_RS04400 at 924.791 kb on - strand, within ABZR87_RS04400 at 924.791 kb on - strand, within ABZR87_RS04400 at 924.791 kb on - strand, within ABZR87_RS04400 at 924.791 kb on - strand, within ABZR87_RS04400 at 924.791 kb on - strand, within ABZR87_RS04400 at 924.819 kb on + strand at 924.909 kb on + strand at 924.909 kb on + strand at 924.909 kb on + strand at 924.909 kb on + strand at 924.910 kb on - strand at 924.949 kb on + strand at 924.950 kb on - strand at 924.950 kb on - strand at 925.244 kb on - strand, within ABZR87_RS04405 at 925.342 kb on + strand, within ABZR87_RS04405 at 925.498 kb on + strand, within ABZR87_RS04405 at 925.498 kb on + strand, within ABZR87_RS04405 at 925.498 kb on + strand, within ABZR87_RS04405 at 925.498 kb on + strand, within ABZR87_RS04405 at 925.499 kb on - strand, within ABZR87_RS04405 at 925.499 kb on - strand, within ABZR87_RS04405 at 925.499 kb on - strand, within ABZR87_RS04405 at 925.891 kb on + strand at 925.891 kb on + strand at 925.891 kb on + strand at 925.891 kb on + strand at 925.891 kb on + strand at 925.891 kb on + strand at 925.891 kb on + strand at 925.891 kb on + strand at 925.891 kb on + strand at 925.892 kb on - strand at 925.892 kb on - strand at 925.892 kb on - strand at 925.892 kb on - strand at 925.892 kb on - strand at 925.892 kb on - strand at 925.892 kb on - strand at 925.892 kb on - strand at 925.892 kb on - strand at 925.892 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM remove 922,865 + ABZR87_RS04395 0.56 +0.4 922,865 + ABZR87_RS04395 0.56 -1.6 922,865 + ABZR87_RS04395 0.56 -0.4 922,865 + ABZR87_RS04395 0.56 +1.0 922,866 - ABZR87_RS04395 0.56 +0.2 922,866 - ABZR87_RS04395 0.56 +0.7 922,937 + ABZR87_RS04395 0.60 +0.2 923,160 - ABZR87_RS04395 0.70 -1.2 923,318 + ABZR87_RS04395 0.78 +1.3 923,318 + ABZR87_RS04395 0.78 +0.4 923,318 + ABZR87_RS04395 0.78 -1.2 923,319 - ABZR87_RS04395 0.78 -3.0 923,319 - ABZR87_RS04395 0.78 +0.9 923,319 - ABZR87_RS04395 0.78 -0.0 923,319 - ABZR87_RS04395 0.78 -0.6 923,321 + ABZR87_RS04395 0.78 +1.4 923,321 + ABZR87_RS04395 0.78 +0.5 923,322 - ABZR87_RS04395 0.78 -1.0 923,322 - ABZR87_RS04395 0.78 +0.4 923,489 + ABZR87_RS04395 0.86 -3.0 923,490 - ABZR87_RS04395 0.86 +0.4 923,642 + +0.2 923,642 + +0.8 923,642 + -2.0 923,642 + -2.7 923,645 + -0.1 923,645 + +0.1 923,645 + +0.7 923,645 + +0.4 923,646 - -1.0 923,646 - +1.6 923,646 - -3.0 923,648 + +1.7 923,648 + +0.4 923,648 + +1.2 923,648 + +0.0 923,648 + -0.9 923,648 + +1.8 923,648 + +0.9 923,649 - +0.2 923,649 - +1.0 923,649 - -0.0 923,649 - +0.0 923,774 + +1.5 923,901 + +0.1 923,901 + +0.1 923,902 - -1.1 924,076 + ABZR87_RS04400 0.21 +0.0 924,076 + ABZR87_RS04400 0.21 -0.2 924,076 + ABZR87_RS04400 0.21 +1.6 924,076 + ABZR87_RS04400 0.21 -0.4 924,076 + ABZR87_RS04400 0.21 +0.1 924,076 + ABZR87_RS04400 0.21 +3.4 924,077 - ABZR87_RS04400 0.21 -0.1 924,077 - ABZR87_RS04400 0.21 +0.1 924,077 - ABZR87_RS04400 0.21 -1.5 924,077 - ABZR87_RS04400 0.21 +0.2 924,213 + ABZR87_RS04400 0.34 +1.7 924,214 + ABZR87_RS04400 0.34 -1.6 924,215 - ABZR87_RS04400 0.34 +1.5 924,246 + ABZR87_RS04400 0.37 +1.1 924,454 + ABZR87_RS04400 0.57 -1.3 924,455 - ABZR87_RS04400 0.57 -0.6 924,619 + ABZR87_RS04400 0.73 -0.3 924,619 + ABZR87_RS04400 0.73 +0.3 924,620 - ABZR87_RS04400 0.73 -0.3 924,631 + ABZR87_RS04400 0.74 -0.2 924,658 + ABZR87_RS04400 0.76 -0.2 924,658 + ABZR87_RS04400 0.76 -0.5 924,658 + ABZR87_RS04400 0.76 +0.3 924,658 + ABZR87_RS04400 0.76 +1.0 924,658 + ABZR87_RS04400 0.76 +1.2 924,658 + ABZR87_RS04400 0.76 -1.1 924,658 + ABZR87_RS04400 0.76 +1.1 924,667 + ABZR87_RS04400 0.77 +1.4 924,667 + ABZR87_RS04400 0.77 +2.0 924,668 - ABZR87_RS04400 0.77 +0.0 924,668 - ABZR87_RS04400 0.77 +0.5 924,733 + ABZR87_RS04400 0.84 +0.5 924,733 + ABZR87_RS04400 0.84 -2.9 924,733 + ABZR87_RS04400 0.84 +0.1 924,733 + ABZR87_RS04400 0.84 -0.1 924,734 - ABZR87_RS04400 0.84 +0.3 924,734 - ABZR87_RS04400 0.84 +0.5 924,734 - ABZR87_RS04400 0.84 +0.3 924,734 - ABZR87_RS04400 0.84 +0.1 924,736 + ABZR87_RS04400 0.84 -0.7 924,736 + ABZR87_RS04400 0.84 +2.7 924,761 - ABZR87_RS04400 0.86 -2.5 924,790 + ABZR87_RS04400 0.89 +0.5 924,790 + ABZR87_RS04400 0.89 +0.2 924,791 - ABZR87_RS04400 0.89 -2.0 924,791 - ABZR87_RS04400 0.89 -0.3 924,791 - ABZR87_RS04400 0.89 +0.6 924,791 - ABZR87_RS04400 0.89 -1.0 924,791 - ABZR87_RS04400 0.89 +0.6 924,791 - ABZR87_RS04400 0.89 +1.1 924,819 + -0.4 924,909 + -0.7 924,909 + +0.4 924,909 + +1.2 924,909 + +1.2 924,910 - +0.8 924,949 + +0.5 924,950 - -1.8 924,950 - +0.8 925,244 - ABZR87_RS04405 0.29 -1.2 925,342 + ABZR87_RS04405 0.40 +1.1 925,498 + ABZR87_RS04405 0.56 +2.3 925,498 + ABZR87_RS04405 0.56 -0.3 925,498 + ABZR87_RS04405 0.56 -0.8 925,498 + ABZR87_RS04405 0.56 -2.0 925,499 - ABZR87_RS04405 0.56 -0.4 925,499 - ABZR87_RS04405 0.56 -1.0 925,499 - ABZR87_RS04405 0.56 +1.2 925,891 + -0.8 925,891 + -2.7 925,891 + +0.1 925,891 + -0.2 925,891 + +0.0 925,891 + -1.0 925,891 + +3.2 925,891 + +2.8 925,891 + -1.5 925,892 - -2.1 925,892 - +4.4 925,892 - -0.7 925,892 - -0.5 925,892 - -2.5 925,892 - +0.7 925,892 - -1.1 925,892 - +0.8 925,892 - +0.8 925,892 - -1.7
Or see this region's nucleotide sequence