Experiment: nitrogen source nitrite 0.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS04255 and ABZR87_RS04260 are separated by 93 nucleotides ABZR87_RS04260 and ABZR87_RS04265 are separated by 138 nucleotides ABZR87_RS04265 and ABZR87_RS04270 are separated by 60 nucleotides ABZR87_RS04270 and ABZR87_RS04275 are separated by 18 nucleotides ABZR87_RS04275 and ABZR87_RS04280 are separated by 76 nucleotides
ABZR87_RS04255: ABZR87_RS04255 - lysoplasmalogenase, at 889,259 to 890,023
_RS04255
ABZR87_RS04260: ABZR87_RS04260 - Lrp/AsnC family transcriptional regulator, at 890,117 to 890,593
_RS04260
ABZR87_RS04265: ABZR87_RS04265 - phenylalanine 4-monooxygenase, at 890,732 to 891,676
_RS04265
ABZR87_RS04270: ABZR87_RS04270 - 4a-hydroxytetrahydrobiopterin dehydratase, at 891,737 to 892,051
_RS04270
ABZR87_RS04275: ABZR87_RS04275 - DUF3717 domain-containing protein, at 892,070 to 892,297
_RS04275
ABZR87_RS04280: ABZR87_RS04280 - response regulator transcription factor, at 892,374 to 893,084
_RS04280
Position (kb) 890
891
892 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 889.905 kb on + strand, within ABZR87_RS04255 at 889.905 kb on + strand, within ABZR87_RS04255 at 889.905 kb on + strand, within ABZR87_RS04255 at 889.906 kb on - strand, within ABZR87_RS04255 at 889.906 kb on - strand, within ABZR87_RS04255 at 890.054 kb on + strand at 890.054 kb on + strand at 890.054 kb on + strand at 890.055 kb on - strand at 890.055 kb on - strand at 890.118 kb on + strand at 890.118 kb on + strand at 890.118 kb on + strand at 890.118 kb on + strand at 890.118 kb on + strand at 890.119 kb on - strand at 890.119 kb on - strand at 890.119 kb on - strand at 890.171 kb on + strand, within ABZR87_RS04260 at 890.171 kb on + strand, within ABZR87_RS04260 at 890.171 kb on + strand, within ABZR87_RS04260 at 890.171 kb on + strand, within ABZR87_RS04260 at 890.171 kb on + strand, within ABZR87_RS04260 at 890.172 kb on - strand, within ABZR87_RS04260 at 890.172 kb on - strand, within ABZR87_RS04260 at 890.172 kb on - strand, within ABZR87_RS04260 at 890.172 kb on - strand, within ABZR87_RS04260 at 890.172 kb on - strand, within ABZR87_RS04260 at 890.172 kb on - strand, within ABZR87_RS04260 at 890.172 kb on - strand, within ABZR87_RS04260 at 890.172 kb on - strand, within ABZR87_RS04260 at 890.176 kb on + strand, within ABZR87_RS04260 at 890.177 kb on - strand, within ABZR87_RS04260 at 890.274 kb on + strand, within ABZR87_RS04260 at 890.274 kb on + strand, within ABZR87_RS04260 at 890.274 kb on + strand, within ABZR87_RS04260 at 890.274 kb on + strand, within ABZR87_RS04260 at 890.274 kb on + strand, within ABZR87_RS04260 at 890.274 kb on + strand, within ABZR87_RS04260 at 890.274 kb on + strand, within ABZR87_RS04260 at 890.275 kb on - strand, within ABZR87_RS04260 at 890.275 kb on - strand, within ABZR87_RS04260 at 890.275 kb on - strand, within ABZR87_RS04260 at 890.275 kb on - strand, within ABZR87_RS04260 at 890.298 kb on + strand, within ABZR87_RS04260 at 890.299 kb on - strand, within ABZR87_RS04260 at 890.299 kb on - strand, within ABZR87_RS04260 at 890.691 kb on + strand at 890.691 kb on + strand at 890.692 kb on - strand at 890.692 kb on - strand at 890.692 kb on - strand at 890.692 kb on - strand at 890.692 kb on - strand at 890.727 kb on + strand at 890.727 kb on + strand at 890.728 kb on - strand at 890.728 kb on - strand at 890.728 kb on - strand at 890.728 kb on - strand at 890.728 kb on - strand at 890.888 kb on + strand, within ABZR87_RS04265 at 890.889 kb on - strand, within ABZR87_RS04265 at 890.925 kb on - strand, within ABZR87_RS04265 at 890.946 kb on - strand, within ABZR87_RS04265 at 890.947 kb on - strand, within ABZR87_RS04265 at 891.171 kb on - strand, within ABZR87_RS04265 at 891.171 kb on - strand, within ABZR87_RS04265 at 891.171 kb on - strand, within ABZR87_RS04265 at 891.245 kb on + strand, within ABZR87_RS04265 at 891.246 kb on - strand, within ABZR87_RS04265 at 891.246 kb on - strand, within ABZR87_RS04265 at 891.246 kb on - strand, within ABZR87_RS04265 at 891.246 kb on - strand, within ABZR87_RS04265 at 891.317 kb on + strand, within ABZR87_RS04265 at 891.317 kb on + strand, within ABZR87_RS04265 at 891.318 kb on - strand, within ABZR87_RS04265 at 891.318 kb on - strand, within ABZR87_RS04265 at 891.323 kb on + strand, within ABZR87_RS04265 at 891.323 kb on + strand, within ABZR87_RS04265 at 891.323 kb on + strand, within ABZR87_RS04265 at 891.324 kb on - strand, within ABZR87_RS04265 at 891.324 kb on - strand, within ABZR87_RS04265 at 891.324 kb on - strand, within ABZR87_RS04265 at 891.324 kb on - strand, within ABZR87_RS04265 at 891.371 kb on + strand, within ABZR87_RS04265 at 891.371 kb on + strand, within ABZR87_RS04265 at 891.371 kb on + strand, within ABZR87_RS04265 at 891.371 kb on + strand, within ABZR87_RS04265 at 891.372 kb on - strand, within ABZR87_RS04265 at 891.372 kb on - strand, within ABZR87_RS04265 at 891.372 kb on - strand, within ABZR87_RS04265 at 891.411 kb on - strand, within ABZR87_RS04265 at 891.411 kb on - strand, within ABZR87_RS04265 at 891.411 kb on - strand, within ABZR87_RS04265 at 891.503 kb on + strand, within ABZR87_RS04265 at 891.503 kb on + strand, within ABZR87_RS04265 at 891.503 kb on + strand, within ABZR87_RS04265 at 891.504 kb on - strand, within ABZR87_RS04265 at 891.504 kb on - strand, within ABZR87_RS04265 at 891.504 kb on - strand, within ABZR87_RS04265 at 891.504 kb on - strand, within ABZR87_RS04265 at 891.504 kb on - strand, within ABZR87_RS04265 at 891.504 kb on - strand, within ABZR87_RS04265 at 891.504 kb on - strand, within ABZR87_RS04265 at 891.504 kb on - strand, within ABZR87_RS04265 at 891.566 kb on + strand, within ABZR87_RS04265 at 891.567 kb on - strand, within ABZR87_RS04265 at 891.567 kb on - strand, within ABZR87_RS04265 at 891.567 kb on - strand, within ABZR87_RS04265 at 891.567 kb on - strand, within ABZR87_RS04265 at 891.567 kb on - strand, within ABZR87_RS04265 at 891.628 kb on - strand at 891.628 kb on - strand at 891.628 kb on - strand at 891.699 kb on + strand at 891.699 kb on + strand at 891.699 kb on + strand at 891.699 kb on + strand at 891.699 kb on + strand at 891.700 kb on - strand at 891.700 kb on - strand at 891.700 kb on - strand at 891.700 kb on - strand at 891.700 kb on - strand at 891.700 kb on - strand at 891.701 kb on + strand at 891.701 kb on + strand at 891.702 kb on - strand at 891.702 kb on - strand at 891.702 kb on - strand at 891.702 kb on - strand at 891.702 kb on - strand at 891.702 kb on - strand at 891.702 kb on - strand at 891.946 kb on + strand, within ABZR87_RS04270 at 891.946 kb on + strand, within ABZR87_RS04270 at 891.946 kb on + strand, within ABZR87_RS04270 at 891.946 kb on + strand, within ABZR87_RS04270 at 891.946 kb on + strand, within ABZR87_RS04270 at 891.946 kb on + strand, within ABZR87_RS04270 at 891.946 kb on + strand, within ABZR87_RS04270 at 891.946 kb on + strand, within ABZR87_RS04270 at 891.946 kb on + strand, within ABZR87_RS04270 at 891.946 kb on + strand, within ABZR87_RS04270 at 891.947 kb on - strand, within ABZR87_RS04270 at 891.947 kb on - strand, within ABZR87_RS04270 at 891.947 kb on - strand, within ABZR87_RS04270 at 891.947 kb on - strand, within ABZR87_RS04270 at 892.049 kb on + strand at 892.049 kb on + strand at 892.049 kb on + strand at 892.050 kb on - strand at 892.101 kb on + strand, within ABZR87_RS04275 at 892.101 kb on + strand, within ABZR87_RS04275 at 892.101 kb on + strand, within ABZR87_RS04275 at 892.101 kb on + strand, within ABZR87_RS04275 at 892.101 kb on + strand, within ABZR87_RS04275 at 892.102 kb on - strand, within ABZR87_RS04275 at 892.102 kb on - strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.157 kb on + strand, within ABZR87_RS04275 at 892.158 kb on - strand, within ABZR87_RS04275 at 892.158 kb on - strand, within ABZR87_RS04275 at 892.158 kb on - strand, within ABZR87_RS04275 at 892.158 kb on - strand, within ABZR87_RS04275 at 892.158 kb on - strand, within ABZR87_RS04275 at 892.158 kb on - strand, within ABZR87_RS04275 at 892.173 kb on + strand, within ABZR87_RS04275 at 892.173 kb on + strand, within ABZR87_RS04275 at 892.174 kb on - strand, within ABZR87_RS04275 at 892.174 kb on - strand, within ABZR87_RS04275 at 892.174 kb on - strand, within ABZR87_RS04275 at 892.308 kb on + strand at 892.308 kb on + strand at 892.308 kb on + strand at 892.308 kb on + strand at 892.308 kb on + strand at 892.309 kb on - strand at 892.309 kb on - strand at 892.309 kb on - strand at 892.309 kb on - strand at 892.309 kb on - strand at 892.309 kb on - strand at 892.309 kb on - strand at 892.665 kb on + strand, within ABZR87_RS04280 at 892.666 kb on - strand, within ABZR87_RS04280 at 892.666 kb on - strand, within ABZR87_RS04280 at 892.666 kb on - strand, within ABZR87_RS04280 at 892.666 kb on - strand, within ABZR87_RS04280 at 892.666 kb on - strand, within ABZR87_RS04280 at 892.666 kb on - strand, within ABZR87_RS04280
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM remove 889,905 + ABZR87_RS04255 0.84 -3.2 889,905 + ABZR87_RS04255 0.84 -0.1 889,905 + ABZR87_RS04255 0.84 +1.6 889,906 - ABZR87_RS04255 0.85 -0.5 889,906 - ABZR87_RS04255 0.85 +0.5 890,054 + -2.0 890,054 + -3.2 890,054 + -1.1 890,055 - +0.4 890,055 - -2.1 890,118 + +0.7 890,118 + +0.2 890,118 + +0.2 890,118 + -0.2 890,118 + +1.3 890,119 - -0.7 890,119 - +0.2 890,119 - +0.1 890,171 + ABZR87_RS04260 0.11 -2.1 890,171 + ABZR87_RS04260 0.11 +0.7 890,171 + ABZR87_RS04260 0.11 -0.4 890,171 + ABZR87_RS04260 0.11 +0.3 890,171 + ABZR87_RS04260 0.11 +1.3 890,172 - ABZR87_RS04260 0.12 +0.7 890,172 - ABZR87_RS04260 0.12 +1.1 890,172 - ABZR87_RS04260 0.12 -0.7 890,172 - ABZR87_RS04260 0.12 +1.0 890,172 - ABZR87_RS04260 0.12 +1.0 890,172 - ABZR87_RS04260 0.12 +0.6 890,172 - ABZR87_RS04260 0.12 +0.0 890,172 - ABZR87_RS04260 0.12 +1.5 890,176 + ABZR87_RS04260 0.12 -0.8 890,177 - ABZR87_RS04260 0.13 +0.7 890,274 + ABZR87_RS04260 0.33 +0.7 890,274 + ABZR87_RS04260 0.33 +0.5 890,274 + ABZR87_RS04260 0.33 +0.6 890,274 + ABZR87_RS04260 0.33 +0.7 890,274 + ABZR87_RS04260 0.33 -2.6 890,274 + ABZR87_RS04260 0.33 +0.8 890,274 + ABZR87_RS04260 0.33 -0.1 890,275 - ABZR87_RS04260 0.33 -0.0 890,275 - ABZR87_RS04260 0.33 +0.2 890,275 - ABZR87_RS04260 0.33 +0.3 890,275 - ABZR87_RS04260 0.33 -0.2 890,298 + ABZR87_RS04260 0.38 -0.6 890,299 - ABZR87_RS04260 0.38 +0.8 890,299 - ABZR87_RS04260 0.38 +0.0 890,691 + +0.6 890,691 + -1.9 890,692 - -1.0 890,692 - +1.0 890,692 - +0.1 890,692 - +0.1 890,692 - -1.5 890,727 + -0.6 890,727 + -1.1 890,728 - +2.3 890,728 - +1.2 890,728 - +1.8 890,728 - +1.4 890,728 - -0.2 890,888 + ABZR87_RS04265 0.17 +2.4 890,889 - ABZR87_RS04265 0.17 +1.6 890,925 - ABZR87_RS04265 0.20 +2.0 890,946 - ABZR87_RS04265 0.23 -0.3 890,947 - ABZR87_RS04265 0.23 -3.0 891,171 - ABZR87_RS04265 0.46 +1.5 891,171 - ABZR87_RS04265 0.46 +0.2 891,171 - ABZR87_RS04265 0.46 +1.8 891,245 + ABZR87_RS04265 0.54 +0.4 891,246 - ABZR87_RS04265 0.54 -1.7 891,246 - ABZR87_RS04265 0.54 +1.1 891,246 - ABZR87_RS04265 0.54 -1.0 891,246 - ABZR87_RS04265 0.54 +1.1 891,317 + ABZR87_RS04265 0.62 +0.3 891,317 + ABZR87_RS04265 0.62 +4.2 891,318 - ABZR87_RS04265 0.62 -0.4 891,318 - ABZR87_RS04265 0.62 +1.6 891,323 + ABZR87_RS04265 0.63 +2.8 891,323 + ABZR87_RS04265 0.63 +1.8 891,323 + ABZR87_RS04265 0.63 -2.7 891,324 - ABZR87_RS04265 0.63 +1.5 891,324 - ABZR87_RS04265 0.63 +2.0 891,324 - ABZR87_RS04265 0.63 +0.7 891,324 - ABZR87_RS04265 0.63 -0.2 891,371 + ABZR87_RS04265 0.68 +0.6 891,371 + ABZR87_RS04265 0.68 +0.1 891,371 + ABZR87_RS04265 0.68 -0.9 891,371 + ABZR87_RS04265 0.68 +2.6 891,372 - ABZR87_RS04265 0.68 +0.6 891,372 - ABZR87_RS04265 0.68 +1.5 891,372 - ABZR87_RS04265 0.68 -1.6 891,411 - ABZR87_RS04265 0.72 -0.2 891,411 - ABZR87_RS04265 0.72 -2.4 891,411 - ABZR87_RS04265 0.72 +0.8 891,503 + ABZR87_RS04265 0.82 +0.5 891,503 + ABZR87_RS04265 0.82 +1.4 891,503 + ABZR87_RS04265 0.82 +0.3 891,504 - ABZR87_RS04265 0.82 -2.0 891,504 - ABZR87_RS04265 0.82 +1.1 891,504 - ABZR87_RS04265 0.82 +0.5 891,504 - ABZR87_RS04265 0.82 +0.0 891,504 - ABZR87_RS04265 0.82 -1.1 891,504 - ABZR87_RS04265 0.82 -2.7 891,504 - ABZR87_RS04265 0.82 +1.7 891,504 - ABZR87_RS04265 0.82 -0.4 891,566 + ABZR87_RS04265 0.88 +0.8 891,567 - ABZR87_RS04265 0.88 +0.0 891,567 - ABZR87_RS04265 0.88 -0.2 891,567 - ABZR87_RS04265 0.88 -0.5 891,567 - ABZR87_RS04265 0.88 +0.3 891,567 - ABZR87_RS04265 0.88 -2.4 891,628 - +0.2 891,628 - -0.8 891,628 - +0.8 891,699 + -0.2 891,699 + +1.3 891,699 + +0.7 891,699 + -2.3 891,699 + +0.1 891,700 - +1.4 891,700 - +0.5 891,700 - -1.2 891,700 - +1.1 891,700 - +0.4 891,700 - -3.9 891,701 + -0.1 891,701 + -0.7 891,702 - +0.9 891,702 - -1.0 891,702 - +0.5 891,702 - +0.1 891,702 - +0.3 891,702 - +0.3 891,702 - -1.3 891,946 + ABZR87_RS04270 0.66 +1.0 891,946 + ABZR87_RS04270 0.66 +0.2 891,946 + ABZR87_RS04270 0.66 -0.9 891,946 + ABZR87_RS04270 0.66 -0.4 891,946 + ABZR87_RS04270 0.66 -1.4 891,946 + ABZR87_RS04270 0.66 -1.2 891,946 + ABZR87_RS04270 0.66 -3.1 891,946 + ABZR87_RS04270 0.66 +0.4 891,946 + ABZR87_RS04270 0.66 +1.5 891,946 + ABZR87_RS04270 0.66 -3.2 891,947 - ABZR87_RS04270 0.67 -2.4 891,947 - ABZR87_RS04270 0.67 -0.6 891,947 - ABZR87_RS04270 0.67 +1.4 891,947 - ABZR87_RS04270 0.67 +2.4 892,049 + -0.7 892,049 + +0.2 892,049 + +0.0 892,050 - +0.7 892,101 + ABZR87_RS04275 0.14 +0.3 892,101 + ABZR87_RS04275 0.14 +0.6 892,101 + ABZR87_RS04275 0.14 +1.6 892,101 + ABZR87_RS04275 0.14 -0.5 892,101 + ABZR87_RS04275 0.14 +1.3 892,102 - ABZR87_RS04275 0.14 -0.7 892,102 - ABZR87_RS04275 0.14 +0.4 892,157 + ABZR87_RS04275 0.38 +0.1 892,157 + ABZR87_RS04275 0.38 +0.1 892,157 + ABZR87_RS04275 0.38 +0.8 892,157 + ABZR87_RS04275 0.38 +0.8 892,157 + ABZR87_RS04275 0.38 +2.7 892,157 + ABZR87_RS04275 0.38 -0.4 892,157 + ABZR87_RS04275 0.38 +0.4 892,157 + ABZR87_RS04275 0.38 +1.0 892,157 + ABZR87_RS04275 0.38 -0.3 892,157 + ABZR87_RS04275 0.38 +0.7 892,158 - ABZR87_RS04275 0.39 +0.2 892,158 - ABZR87_RS04275 0.39 -1.0 892,158 - ABZR87_RS04275 0.39 +0.7 892,158 - ABZR87_RS04275 0.39 +0.2 892,158 - ABZR87_RS04275 0.39 +1.1 892,158 - ABZR87_RS04275 0.39 -0.0 892,173 + ABZR87_RS04275 0.45 +0.9 892,173 + ABZR87_RS04275 0.45 +0.2 892,174 - ABZR87_RS04275 0.46 +0.1 892,174 - ABZR87_RS04275 0.46 +0.6 892,174 - ABZR87_RS04275 0.46 -1.6 892,308 + -0.1 892,308 + +0.3 892,308 + +0.1 892,308 + -0.6 892,308 + -0.8 892,309 - +0.6 892,309 - -1.5 892,309 - +1.4 892,309 - +1.5 892,309 - +0.3 892,309 - +0.5 892,309 - -3.2 892,665 + ABZR87_RS04280 0.41 -0.3 892,666 - ABZR87_RS04280 0.41 +0.9 892,666 - ABZR87_RS04280 0.41 +0.6 892,666 - ABZR87_RS04280 0.41 +0.8 892,666 - ABZR87_RS04280 0.41 +1.0 892,666 - ABZR87_RS04280 0.41 +1.4 892,666 - ABZR87_RS04280 0.41 +0.3
Or see this region's nucleotide sequence