Experiment: nitrogen source nitrite 0.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03580 and ABZR87_RS03585 are separated by 360 nucleotides ABZR87_RS03585 and ABZR87_RS03590 are separated by 189 nucleotides
ABZR87_RS03580: ABZR87_RS03580 - sensor domain-containing diguanylate cyclase, at 751,790 to 753,157
_RS03580
ABZR87_RS03585: ABZR87_RS03585 - LysR family transcriptional regulator, at 753,518 to 754,435
_RS03585
ABZR87_RS03590: ABZR87_RS03590 - SDR family oxidoreductase, at 754,625 to 755,374
_RS03590
Position (kb) 753
754
755 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 752.519 kb on + strand, within ABZR87_RS03580 at 752.519 kb on + strand, within ABZR87_RS03580 at 752.519 kb on + strand, within ABZR87_RS03580 at 752.519 kb on + strand, within ABZR87_RS03580 at 752.519 kb on + strand, within ABZR87_RS03580 at 752.519 kb on + strand, within ABZR87_RS03580 at 752.519 kb on + strand, within ABZR87_RS03580 at 752.519 kb on + strand, within ABZR87_RS03580 at 752.519 kb on + strand, within ABZR87_RS03580 at 752.520 kb on - strand, within ABZR87_RS03580 at 752.520 kb on - strand, within ABZR87_RS03580 at 752.520 kb on - strand, within ABZR87_RS03580 at 752.520 kb on - strand, within ABZR87_RS03580 at 752.663 kb on + strand, within ABZR87_RS03580 at 752.663 kb on + strand, within ABZR87_RS03580 at 752.664 kb on - strand, within ABZR87_RS03580 at 752.664 kb on - strand, within ABZR87_RS03580 at 752.664 kb on - strand, within ABZR87_RS03580 at 752.664 kb on - strand, within ABZR87_RS03580 at 752.675 kb on + strand, within ABZR87_RS03580 at 752.675 kb on + strand, within ABZR87_RS03580 at 752.675 kb on + strand, within ABZR87_RS03580 at 752.675 kb on + strand, within ABZR87_RS03580 at 752.675 kb on + strand, within ABZR87_RS03580 at 752.675 kb on + strand, within ABZR87_RS03580 at 752.675 kb on + strand, within ABZR87_RS03580 at 752.676 kb on - strand, within ABZR87_RS03580 at 752.676 kb on - strand, within ABZR87_RS03580 at 752.676 kb on - strand, within ABZR87_RS03580 at 752.676 kb on - strand, within ABZR87_RS03580 at 752.676 kb on - strand, within ABZR87_RS03580 at 752.699 kb on + strand, within ABZR87_RS03580 at 752.699 kb on + strand, within ABZR87_RS03580 at 752.699 kb on + strand, within ABZR87_RS03580 at 752.699 kb on + strand, within ABZR87_RS03580 at 752.699 kb on + strand, within ABZR87_RS03580 at 752.699 kb on + strand, within ABZR87_RS03580 at 752.699 kb on + strand, within ABZR87_RS03580 at 752.699 kb on + strand, within ABZR87_RS03580 at 752.700 kb on - strand, within ABZR87_RS03580 at 752.700 kb on - strand, within ABZR87_RS03580 at 752.700 kb on - strand, within ABZR87_RS03580 at 752.700 kb on - strand, within ABZR87_RS03580 at 752.700 kb on - strand, within ABZR87_RS03580 at 752.700 kb on - strand, within ABZR87_RS03580 at 752.700 kb on - strand, within ABZR87_RS03580 at 752.700 kb on - strand, within ABZR87_RS03580 at 752.700 kb on - strand, within ABZR87_RS03580 at 752.700 kb on - strand, within ABZR87_RS03580 at 752.700 kb on - strand, within ABZR87_RS03580 at 752.772 kb on - strand, within ABZR87_RS03580 at 752.772 kb on - strand, within ABZR87_RS03580 at 752.996 kb on + strand, within ABZR87_RS03580 at 752.997 kb on - strand, within ABZR87_RS03580 at 752.997 kb on - strand, within ABZR87_RS03580 at 752.997 kb on - strand, within ABZR87_RS03580 at 752.997 kb on - strand, within ABZR87_RS03580 at 752.997 kb on - strand, within ABZR87_RS03580 at 752.997 kb on - strand, within ABZR87_RS03580 at 752.997 kb on - strand, within ABZR87_RS03580 at 753.030 kb on + strand at 753.087 kb on + strand at 753.087 kb on + strand at 753.087 kb on + strand at 753.088 kb on - strand at 753.088 kb on - strand at 753.088 kb on - strand at 753.088 kb on - strand at 753.088 kb on - strand at 753.089 kb on + strand at 753.089 kb on + strand at 753.089 kb on + strand at 753.089 kb on + strand at 753.090 kb on - strand at 753.090 kb on - strand at 753.090 kb on - strand at 753.155 kb on + strand at 753.155 kb on + strand at 753.156 kb on - strand at 753.156 kb on - strand at 753.164 kb on + strand at 753.164 kb on + strand at 753.165 kb on - strand at 753.165 kb on - strand at 753.165 kb on - strand at 753.165 kb on - strand at 753.174 kb on - strand at 753.222 kb on + strand at 753.222 kb on + strand at 753.222 kb on + strand at 753.223 kb on - strand at 753.223 kb on - strand at 753.233 kb on + strand at 753.233 kb on + strand at 753.233 kb on + strand at 753.234 kb on - strand at 753.234 kb on - strand at 753.234 kb on - strand at 753.234 kb on - strand at 753.234 kb on - strand at 753.234 kb on - strand at 753.235 kb on + strand at 753.235 kb on + strand at 753.236 kb on - strand at 753.237 kb on + strand at 753.237 kb on + strand at 753.237 kb on + strand at 753.237 kb on + strand at 753.237 kb on + strand at 753.237 kb on + strand at 753.238 kb on - strand at 753.238 kb on - strand at 753.243 kb on + strand at 753.243 kb on + strand at 753.244 kb on - strand at 753.246 kb on + strand at 753.246 kb on + strand at 753.247 kb on - strand at 753.249 kb on + strand at 753.249 kb on + strand at 753.250 kb on - strand at 753.250 kb on - strand at 753.252 kb on + strand at 753.252 kb on + strand at 753.252 kb on + strand at 753.252 kb on + strand at 753.252 kb on + strand at 753.252 kb on + strand at 753.252 kb on + strand at 753.253 kb on - strand at 753.253 kb on - strand at 753.253 kb on - strand at 753.253 kb on - strand at 753.257 kb on - strand at 753.279 kb on + strand at 753.279 kb on + strand at 753.280 kb on - strand at 753.280 kb on - strand at 753.280 kb on - strand at 753.346 kb on + strand at 753.409 kb on - strand at 753.409 kb on - strand at 753.409 kb on - strand at 753.436 kb on + strand at 753.436 kb on + strand at 753.436 kb on + strand at 753.436 kb on + strand at 753.436 kb on + strand at 753.436 kb on + strand at 753.436 kb on + strand at 753.436 kb on + strand at 753.436 kb on + strand at 753.436 kb on + strand at 753.436 kb on + strand at 753.436 kb on + strand at 753.437 kb on - strand at 753.437 kb on - strand at 753.437 kb on - strand at 753.437 kb on - strand at 753.437 kb on - strand at 753.437 kb on - strand at 753.437 kb on - strand at 753.469 kb on + strand at 753.469 kb on + strand at 753.469 kb on + strand at 753.477 kb on + strand at 753.477 kb on + strand at 753.477 kb on + strand at 753.477 kb on + strand at 753.477 kb on + strand at 753.477 kb on + strand at 753.477 kb on + strand at 753.477 kb on + strand at 753.477 kb on + strand at 753.477 kb on + strand at 753.477 kb on + strand at 753.477 kb on + strand at 753.477 kb on + strand at 753.477 kb on + strand at 753.477 kb on + strand at 753.478 kb on - strand at 753.478 kb on - strand at 753.478 kb on - strand at 753.478 kb on - strand at 753.478 kb on - strand at 753.478 kb on - strand at 753.478 kb on - strand at 753.616 kb on - strand, within ABZR87_RS03585 at 753.702 kb on + strand, within ABZR87_RS03585 at 753.703 kb on - strand, within ABZR87_RS03585 at 753.858 kb on + strand, within ABZR87_RS03585 at 753.858 kb on + strand, within ABZR87_RS03585 at 753.858 kb on + strand, within ABZR87_RS03585 at 753.858 kb on + strand, within ABZR87_RS03585 at 753.858 kb on + strand, within ABZR87_RS03585 at 753.858 kb on + strand, within ABZR87_RS03585 at 753.859 kb on - strand, within ABZR87_RS03585 at 753.859 kb on - strand, within ABZR87_RS03585 at 753.859 kb on - strand, within ABZR87_RS03585 at 753.859 kb on - strand, within ABZR87_RS03585 at 753.859 kb on - strand, within ABZR87_RS03585 at 753.859 kb on - strand, within ABZR87_RS03585 at 753.859 kb on - strand, within ABZR87_RS03585 at 753.859 kb on - strand, within ABZR87_RS03585 at 753.859 kb on - strand, within ABZR87_RS03585 at 753.859 kb on - strand, within ABZR87_RS03585 at 753.859 kb on - strand, within ABZR87_RS03585 at 753.859 kb on - strand, within ABZR87_RS03585 at 753.859 kb on - strand, within ABZR87_RS03585 at 753.859 kb on - strand, within ABZR87_RS03585 at 753.913 kb on - strand, within ABZR87_RS03585 at 753.913 kb on - strand, within ABZR87_RS03585 at 753.913 kb on - strand, within ABZR87_RS03585 at 753.924 kb on + strand, within ABZR87_RS03585 at 753.924 kb on + strand, within ABZR87_RS03585 at 754.055 kb on + strand, within ABZR87_RS03585 at 754.056 kb on - strand, within ABZR87_RS03585 at 754.056 kb on - strand, within ABZR87_RS03585 at 754.239 kb on + strand, within ABZR87_RS03585 at 754.239 kb on + strand, within ABZR87_RS03585 at 754.239 kb on + strand, within ABZR87_RS03585 at 754.239 kb on + strand, within ABZR87_RS03585 at 754.239 kb on + strand, within ABZR87_RS03585 at 754.240 kb on - strand, within ABZR87_RS03585 at 754.240 kb on - strand, within ABZR87_RS03585 at 754.240 kb on - strand, within ABZR87_RS03585 at 754.240 kb on - strand, within ABZR87_RS03585 at 754.242 kb on + strand, within ABZR87_RS03585 at 754.242 kb on + strand, within ABZR87_RS03585 at 754.242 kb on + strand, within ABZR87_RS03585 at 754.242 kb on + strand, within ABZR87_RS03585 at 754.242 kb on + strand, within ABZR87_RS03585 at 754.242 kb on + strand, within ABZR87_RS03585 at 754.242 kb on + strand, within ABZR87_RS03585 at 754.243 kb on - strand, within ABZR87_RS03585 at 754.243 kb on - strand, within ABZR87_RS03585 at 754.243 kb on - strand, within ABZR87_RS03585 at 754.243 kb on - strand, within ABZR87_RS03585 at 754.243 kb on - strand, within ABZR87_RS03585 at 754.243 kb on - strand, within ABZR87_RS03585 at 754.243 kb on - strand, within ABZR87_RS03585 at 754.378 kb on + strand at 754.470 kb on + strand at 754.473 kb on + strand at 754.480 kb on - strand at 754.514 kb on + strand at 754.515 kb on - strand at 754.838 kb on + strand, within ABZR87_RS03590 at 754.838 kb on + strand, within ABZR87_RS03590 at 754.839 kb on - strand, within ABZR87_RS03590 at 754.839 kb on - strand, within ABZR87_RS03590 at 754.839 kb on - strand, within ABZR87_RS03590 at 755.075 kb on + strand, within ABZR87_RS03590 at 755.076 kb on - strand, within ABZR87_RS03590 at 755.221 kb on - strand, within ABZR87_RS03590 at 755.326 kb on + strand at 755.326 kb on + strand at 755.326 kb on + strand at 755.326 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM remove 752,519 + ABZR87_RS03580 0.53 -0.0 752,519 + ABZR87_RS03580 0.53 +1.0 752,519 + ABZR87_RS03580 0.53 -0.7 752,519 + ABZR87_RS03580 0.53 +0.2 752,519 + ABZR87_RS03580 0.53 -0.6 752,519 + ABZR87_RS03580 0.53 +0.4 752,519 + ABZR87_RS03580 0.53 +0.7 752,519 + ABZR87_RS03580 0.53 -4.0 752,519 + ABZR87_RS03580 0.53 +0.6 752,520 - ABZR87_RS03580 0.53 -0.9 752,520 - ABZR87_RS03580 0.53 +0.2 752,520 - ABZR87_RS03580 0.53 +0.5 752,520 - ABZR87_RS03580 0.53 -0.2 752,663 + ABZR87_RS03580 0.64 +1.2 752,663 + ABZR87_RS03580 0.64 +0.3 752,664 - ABZR87_RS03580 0.64 -0.6 752,664 - ABZR87_RS03580 0.64 -0.4 752,664 - ABZR87_RS03580 0.64 +1.1 752,664 - ABZR87_RS03580 0.64 -3.2 752,675 + ABZR87_RS03580 0.65 +0.6 752,675 + ABZR87_RS03580 0.65 -1.9 752,675 + ABZR87_RS03580 0.65 -1.5 752,675 + ABZR87_RS03580 0.65 +0.7 752,675 + ABZR87_RS03580 0.65 +4.5 752,675 + ABZR87_RS03580 0.65 -0.3 752,675 + ABZR87_RS03580 0.65 -0.6 752,676 - ABZR87_RS03580 0.65 +0.7 752,676 - ABZR87_RS03580 0.65 -0.3 752,676 - ABZR87_RS03580 0.65 +0.7 752,676 - ABZR87_RS03580 0.65 -0.4 752,676 - ABZR87_RS03580 0.65 +1.6 752,699 + ABZR87_RS03580 0.66 +2.7 752,699 + ABZR87_RS03580 0.66 +0.5 752,699 + ABZR87_RS03580 0.66 -0.1 752,699 + ABZR87_RS03580 0.66 +0.1 752,699 + ABZR87_RS03580 0.66 +1.6 752,699 + ABZR87_RS03580 0.66 -0.3 752,699 + ABZR87_RS03580 0.66 -0.5 752,699 + ABZR87_RS03580 0.66 +0.3 752,700 - ABZR87_RS03580 0.67 -2.0 752,700 - ABZR87_RS03580 0.67 +0.2 752,700 - ABZR87_RS03580 0.67 +0.6 752,700 - ABZR87_RS03580 0.67 +0.2 752,700 - ABZR87_RS03580 0.67 +3.9 752,700 - ABZR87_RS03580 0.67 +0.4 752,700 - ABZR87_RS03580 0.67 +0.5 752,700 - ABZR87_RS03580 0.67 +0.8 752,700 - ABZR87_RS03580 0.67 -0.8 752,700 - ABZR87_RS03580 0.67 -1.2 752,700 - ABZR87_RS03580 0.67 -1.2 752,772 - ABZR87_RS03580 0.72 -1.5 752,772 - ABZR87_RS03580 0.72 +0.9 752,996 + ABZR87_RS03580 0.88 +0.3 752,997 - ABZR87_RS03580 0.88 +0.1 752,997 - ABZR87_RS03580 0.88 -0.5 752,997 - ABZR87_RS03580 0.88 -0.1 752,997 - ABZR87_RS03580 0.88 -0.5 752,997 - ABZR87_RS03580 0.88 +0.0 752,997 - ABZR87_RS03580 0.88 +1.2 752,997 - ABZR87_RS03580 0.88 +0.9 753,030 + +0.0 753,087 + +0.5 753,087 + -2.0 753,087 + +1.7 753,088 - -1.1 753,088 - -1.4 753,088 - +0.2 753,088 - +0.7 753,088 - +0.2 753,089 + +0.1 753,089 + -1.7 753,089 + -0.1 753,089 + +1.0 753,090 - -0.5 753,090 - +0.1 753,090 - -1.4 753,155 + +0.8 753,155 + -0.8 753,156 - -0.5 753,156 - +0.9 753,164 + +0.3 753,164 + +0.7 753,165 - -3.8 753,165 - +0.6 753,165 - +1.1 753,165 - -0.9 753,174 - +0.4 753,222 + +0.1 753,222 + -2.1 753,222 + -0.7 753,223 - +0.9 753,223 - -1.5 753,233 + -1.1 753,233 + -3.4 753,233 + -4.0 753,234 - -2.0 753,234 - -1.8 753,234 - +1.3 753,234 - +0.1 753,234 - +0.7 753,234 - +0.3 753,235 + -1.9 753,235 + -2.1 753,236 - -0.4 753,237 + -3.4 753,237 + -0.8 753,237 + -0.6 753,237 + +0.3 753,237 + -0.2 753,237 + -2.5 753,238 - +0.2 753,238 - -1.3 753,243 + -2.2 753,243 + +0.5 753,244 - -0.4 753,246 + -1.7 753,246 + -1.9 753,247 - +0.4 753,249 + +1.0 753,249 + +0.9 753,250 - -0.1 753,250 - -1.9 753,252 + -1.8 753,252 + -0.2 753,252 + -1.0 753,252 + -0.2 753,252 + -1.1 753,252 + -1.8 753,252 + +0.8 753,253 - -0.5 753,253 - -2.6 753,253 - -3.9 753,253 - +0.3 753,257 - -2.4 753,279 + +1.9 753,279 + +0.5 753,280 - -3.7 753,280 - -0.7 753,280 - +0.6 753,346 + -1.2 753,409 - +0.7 753,409 - -0.3 753,409 - -0.3 753,436 + -0.9 753,436 + +1.0 753,436 + -0.1 753,436 + -0.3 753,436 + -0.1 753,436 + +0.3 753,436 + +0.5 753,436 + -1.5 753,436 + -0.9 753,436 + +0.2 753,436 + +1.8 753,436 + +1.4 753,437 - -0.6 753,437 - +1.1 753,437 - +2.2 753,437 - +1.1 753,437 - +1.1 753,437 - -0.4 753,437 - +1.2 753,469 + -0.8 753,469 + +0.7 753,469 + -0.5 753,477 + -0.1 753,477 + +0.3 753,477 + -1.9 753,477 + +0.3 753,477 + +1.0 753,477 + -0.2 753,477 + -0.5 753,477 + -0.1 753,477 + +1.3 753,477 + +0.0 753,477 + -0.6 753,477 + -0.9 753,477 + +1.6 753,477 + +0.7 753,477 + +0.8 753,478 - +1.9 753,478 - +0.1 753,478 - +0.8 753,478 - +1.4 753,478 - -1.8 753,478 - -1.7 753,478 - +0.4 753,616 - ABZR87_RS03585 0.11 +1.3 753,702 + ABZR87_RS03585 0.20 -2.4 753,703 - ABZR87_RS03585 0.20 +1.5 753,858 + ABZR87_RS03585 0.37 -0.5 753,858 + ABZR87_RS03585 0.37 +1.2 753,858 + ABZR87_RS03585 0.37 -0.5 753,858 + ABZR87_RS03585 0.37 -2.0 753,858 + ABZR87_RS03585 0.37 +0.5 753,858 + ABZR87_RS03585 0.37 +0.1 753,859 - ABZR87_RS03585 0.37 +0.1 753,859 - ABZR87_RS03585 0.37 -2.6 753,859 - ABZR87_RS03585 0.37 +1.0 753,859 - ABZR87_RS03585 0.37 -4.3 753,859 - ABZR87_RS03585 0.37 +0.5 753,859 - ABZR87_RS03585 0.37 +0.5 753,859 - ABZR87_RS03585 0.37 -0.0 753,859 - ABZR87_RS03585 0.37 -0.1 753,859 - ABZR87_RS03585 0.37 +1.4 753,859 - ABZR87_RS03585 0.37 -0.5 753,859 - ABZR87_RS03585 0.37 -1.3 753,859 - ABZR87_RS03585 0.37 -0.2 753,859 - ABZR87_RS03585 0.37 -0.2 753,859 - ABZR87_RS03585 0.37 -0.7 753,913 - ABZR87_RS03585 0.43 +0.8 753,913 - ABZR87_RS03585 0.43 +0.9 753,913 - ABZR87_RS03585 0.43 +1.0 753,924 + ABZR87_RS03585 0.44 +1.1 753,924 + ABZR87_RS03585 0.44 +1.0 754,055 + ABZR87_RS03585 0.58 -0.2 754,056 - ABZR87_RS03585 0.59 +0.1 754,056 - ABZR87_RS03585 0.59 -0.3 754,239 + ABZR87_RS03585 0.79 -0.2 754,239 + ABZR87_RS03585 0.79 -0.7 754,239 + ABZR87_RS03585 0.79 -0.1 754,239 + ABZR87_RS03585 0.79 +1.1 754,239 + ABZR87_RS03585 0.79 +0.6 754,240 - ABZR87_RS03585 0.79 +1.6 754,240 - ABZR87_RS03585 0.79 -4.0 754,240 - ABZR87_RS03585 0.79 +0.5 754,240 - ABZR87_RS03585 0.79 +0.6 754,242 + ABZR87_RS03585 0.79 -0.5 754,242 + ABZR87_RS03585 0.79 +0.4 754,242 + ABZR87_RS03585 0.79 -0.9 754,242 + ABZR87_RS03585 0.79 +1.1 754,242 + ABZR87_RS03585 0.79 -0.2 754,242 + ABZR87_RS03585 0.79 -1.0 754,242 + ABZR87_RS03585 0.79 +1.0 754,243 - ABZR87_RS03585 0.79 -0.6 754,243 - ABZR87_RS03585 0.79 +1.2 754,243 - ABZR87_RS03585 0.79 -1.3 754,243 - ABZR87_RS03585 0.79 +0.7 754,243 - ABZR87_RS03585 0.79 -2.7 754,243 - ABZR87_RS03585 0.79 -1.8 754,243 - ABZR87_RS03585 0.79 -0.8 754,378 + +0.4 754,470 + -0.7 754,473 + +0.2 754,480 - -0.3 754,514 + +1.3 754,515 - -1.1 754,838 + ABZR87_RS03590 0.28 -0.8 754,838 + ABZR87_RS03590 0.28 -0.9 754,839 - ABZR87_RS03590 0.29 +0.4 754,839 - ABZR87_RS03590 0.29 -3.3 754,839 - ABZR87_RS03590 0.29 -1.1 755,075 + ABZR87_RS03590 0.60 +0.6 755,076 - ABZR87_RS03590 0.60 +0.1 755,221 - ABZR87_RS03590 0.79 +0.6 755,326 + -0.2 755,326 + +0.5 755,326 + +0.1 755,326 + -3.1
Or see this region's nucleotide sequence