Experiment: nitrogen source nitrite 0.5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03560 and ABZR87_RS03565 are separated by 131 nucleotides ABZR87_RS03565 and ABZR87_RS03570 are separated by 103 nucleotides ABZR87_RS03570 and ABZR87_RS03575 are separated by 6 nucleotides ABZR87_RS03575 and ABZR87_RS03580 are separated by 243 nucleotides
ABZR87_RS03560: ABZR87_RS03560 - hypothetical protein, at 748,043 to 748,630
_RS03560
ABZR87_RS03565: ABZR87_RS03565 - TetR/AcrR family transcriptional regulator, at 748,762 to 749,370
_RS03565
ABZR87_RS03570: ABZR87_RS03570 - MFS transporter, at 749,474 to 750,940
_RS03570
ABZR87_RS03575: ABZR87_RS03575 - undecaprenyl-diphosphatase, at 750,947 to 751,546
_RS03575
ABZR87_RS03580: ABZR87_RS03580 - sensor domain-containing diguanylate cyclase, at 751,790 to 753,157
_RS03580
Position (kb) 749
750
751 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 748.557 kb on + strand, within ABZR87_RS03560 at 748.557 kb on + strand, within ABZR87_RS03560 at 748.557 kb on + strand, within ABZR87_RS03560 at 748.558 kb on - strand, within ABZR87_RS03560 at 748.558 kb on - strand, within ABZR87_RS03560 at 748.558 kb on - strand, within ABZR87_RS03560 at 748.630 kb on + strand at 748.630 kb on + strand at 748.630 kb on + strand at 748.630 kb on + strand at 748.630 kb on + strand at 748.630 kb on + strand at 748.630 kb on + strand at 748.631 kb on - strand at 748.631 kb on - strand at 748.631 kb on - strand at 748.631 kb on - strand at 748.631 kb on - strand at 748.631 kb on - strand at 748.631 kb on - strand at 748.686 kb on + strand at 748.686 kb on + strand at 748.687 kb on - strand at 748.687 kb on - strand at 748.687 kb on - strand at 748.935 kb on + strand, within ABZR87_RS03565 at 749.016 kb on - strand, within ABZR87_RS03565 at 749.021 kb on + strand, within ABZR87_RS03565 at 749.021 kb on + strand, within ABZR87_RS03565 at 749.021 kb on + strand, within ABZR87_RS03565 at 749.021 kb on + strand, within ABZR87_RS03565 at 749.021 kb on + strand, within ABZR87_RS03565 at 749.022 kb on - strand, within ABZR87_RS03565 at 749.022 kb on - strand, within ABZR87_RS03565 at 749.022 kb on - strand, within ABZR87_RS03565 at 749.022 kb on - strand, within ABZR87_RS03565 at 749.022 kb on - strand, within ABZR87_RS03565 at 749.022 kb on - strand, within ABZR87_RS03565 at 749.022 kb on - strand, within ABZR87_RS03565 at 749.022 kb on - strand, within ABZR87_RS03565 at 749.072 kb on + strand, within ABZR87_RS03565 at 749.072 kb on + strand, within ABZR87_RS03565 at 749.072 kb on + strand, within ABZR87_RS03565 at 749.072 kb on + strand, within ABZR87_RS03565 at 749.072 kb on + strand, within ABZR87_RS03565 at 749.073 kb on - strand, within ABZR87_RS03565 at 749.073 kb on - strand, within ABZR87_RS03565 at 749.073 kb on - strand, within ABZR87_RS03565 at 749.073 kb on - strand, within ABZR87_RS03565 at 749.157 kb on - strand, within ABZR87_RS03565 at 749.157 kb on - strand, within ABZR87_RS03565 at 749.224 kb on - strand, within ABZR87_RS03565 at 749.381 kb on + strand at 749.381 kb on + strand at 749.381 kb on + strand at 749.663 kb on + strand, within ABZR87_RS03570 at 749.664 kb on - strand, within ABZR87_RS03570 at 749.675 kb on + strand, within ABZR87_RS03570 at 749.675 kb on + strand, within ABZR87_RS03570 at 749.675 kb on + strand, within ABZR87_RS03570 at 749.676 kb on - strand, within ABZR87_RS03570 at 749.676 kb on - strand, within ABZR87_RS03570 at 749.676 kb on - strand, within ABZR87_RS03570 at 749.676 kb on - strand, within ABZR87_RS03570 at 749.676 kb on - strand, within ABZR87_RS03570 at 749.754 kb on + strand, within ABZR87_RS03570 at 749.755 kb on - strand, within ABZR87_RS03570 at 749.775 kb on + strand, within ABZR87_RS03570 at 749.776 kb on - strand, within ABZR87_RS03570 at 749.776 kb on - strand, within ABZR87_RS03570 at 749.776 kb on - strand, within ABZR87_RS03570 at 749.776 kb on - strand, within ABZR87_RS03570 at 750.353 kb on + strand, within ABZR87_RS03570 at 750.353 kb on + strand, within ABZR87_RS03570 at 750.353 kb on + strand, within ABZR87_RS03570 at 750.353 kb on + strand, within ABZR87_RS03570 at 750.353 kb on + strand, within ABZR87_RS03570 at 750.354 kb on - strand, within ABZR87_RS03570 at 750.354 kb on - strand, within ABZR87_RS03570 at 750.354 kb on - strand, within ABZR87_RS03570 at 750.371 kb on + strand, within ABZR87_RS03570 at 750.371 kb on + strand, within ABZR87_RS03570 at 750.372 kb on - strand, within ABZR87_RS03570 at 750.372 kb on - strand, within ABZR87_RS03570 at 750.710 kb on - strand, within ABZR87_RS03570 at 750.845 kb on + strand at 750.845 kb on + strand at 750.845 kb on + strand at 750.845 kb on + strand at 750.845 kb on + strand at 750.845 kb on + strand at 750.846 kb on - strand at 750.846 kb on - strand at 750.846 kb on - strand at 750.846 kb on - strand at 750.846 kb on - strand at 750.875 kb on + strand at 750.875 kb on + strand at 750.875 kb on + strand at 750.875 kb on + strand at 750.875 kb on + strand at 750.875 kb on + strand at 750.875 kb on + strand at 750.876 kb on - strand at 750.876 kb on - strand at 750.948 kb on + strand at 750.948 kb on + strand at 750.949 kb on - strand at 750.949 kb on - strand at 750.949 kb on - strand at 750.949 kb on - strand at 751.036 kb on + strand, within ABZR87_RS03575 at 751.036 kb on + strand, within ABZR87_RS03575 at 751.036 kb on + strand, within ABZR87_RS03575 at 751.036 kb on + strand, within ABZR87_RS03575 at 751.036 kb on + strand, within ABZR87_RS03575 at 751.037 kb on - strand, within ABZR87_RS03575 at 751.037 kb on - strand, within ABZR87_RS03575 at 751.037 kb on - strand, within ABZR87_RS03575 at 751.037 kb on - strand, within ABZR87_RS03575 at 751.037 kb on - strand, within ABZR87_RS03575 at 751.110 kb on + strand, within ABZR87_RS03575 at 751.110 kb on + strand, within ABZR87_RS03575 at 751.111 kb on - strand, within ABZR87_RS03575 at 751.111 kb on - strand, within ABZR87_RS03575 at 751.111 kb on - strand, within ABZR87_RS03575 at 751.125 kb on + strand, within ABZR87_RS03575 at 751.125 kb on + strand, within ABZR87_RS03575 at 751.125 kb on + strand, within ABZR87_RS03575 at 751.125 kb on + strand, within ABZR87_RS03575 at 751.125 kb on + strand, within ABZR87_RS03575 at 751.125 kb on + strand, within ABZR87_RS03575 at 751.125 kb on + strand, within ABZR87_RS03575 at 751.126 kb on - strand, within ABZR87_RS03575 at 751.126 kb on - strand, within ABZR87_RS03575 at 751.126 kb on - strand, within ABZR87_RS03575 at 751.126 kb on - strand, within ABZR87_RS03575 at 751.126 kb on - strand, within ABZR87_RS03575 at 751.126 kb on - strand, within ABZR87_RS03575 at 751.314 kb on + strand, within ABZR87_RS03575 at 751.314 kb on + strand, within ABZR87_RS03575 at 751.315 kb on - strand, within ABZR87_RS03575 at 751.315 kb on - strand, within ABZR87_RS03575 at 751.546 kb on + strand at 751.547 kb on - strand at 751.547 kb on - strand at 751.547 kb on - strand at 751.602 kb on + strand at 751.602 kb on + strand at 751.602 kb on + strand at 751.602 kb on + strand at 751.603 kb on - strand at 751.664 kb on + strand at 751.664 kb on + strand at 751.665 kb on - strand at 751.665 kb on - strand at 751.665 kb on - strand at 751.665 kb on - strand at 751.695 kb on - strand at 751.722 kb on + strand at 751.722 kb on + strand at 751.722 kb on + strand at 751.722 kb on + strand at 751.722 kb on + strand at 751.722 kb on + strand at 751.722 kb on + strand at 751.723 kb on - strand at 751.723 kb on - strand at 751.723 kb on - strand at 751.723 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 0.5mM remove 748,557 + ABZR87_RS03560 0.87 +0.7 748,557 + ABZR87_RS03560 0.87 -0.3 748,557 + ABZR87_RS03560 0.87 -2.0 748,558 - ABZR87_RS03560 0.88 +0.4 748,558 - ABZR87_RS03560 0.88 -0.5 748,558 - ABZR87_RS03560 0.88 -1.8 748,630 + -0.9 748,630 + +0.7 748,630 + +1.2 748,630 + +0.3 748,630 + -1.9 748,630 + -2.4 748,630 + -0.2 748,631 - -1.8 748,631 - +0.5 748,631 - -1.3 748,631 - -0.1 748,631 - -0.8 748,631 - +0.5 748,631 - -0.7 748,686 + +0.0 748,686 + -1.5 748,687 - -0.1 748,687 - +0.9 748,687 - -1.1 748,935 + ABZR87_RS03565 0.28 +1.6 749,016 - ABZR87_RS03565 0.42 -0.7 749,021 + ABZR87_RS03565 0.43 -0.2 749,021 + ABZR87_RS03565 0.43 -2.4 749,021 + ABZR87_RS03565 0.43 -0.5 749,021 + ABZR87_RS03565 0.43 +0.1 749,021 + ABZR87_RS03565 0.43 +2.4 749,022 - ABZR87_RS03565 0.43 -2.5 749,022 - ABZR87_RS03565 0.43 +0.2 749,022 - ABZR87_RS03565 0.43 -1.1 749,022 - ABZR87_RS03565 0.43 -2.2 749,022 - ABZR87_RS03565 0.43 -0.5 749,022 - ABZR87_RS03565 0.43 -0.2 749,022 - ABZR87_RS03565 0.43 -1.1 749,022 - ABZR87_RS03565 0.43 +1.4 749,072 + ABZR87_RS03565 0.51 -2.3 749,072 + ABZR87_RS03565 0.51 -0.3 749,072 + ABZR87_RS03565 0.51 -1.8 749,072 + ABZR87_RS03565 0.51 -0.1 749,072 + ABZR87_RS03565 0.51 +1.3 749,073 - ABZR87_RS03565 0.51 +0.2 749,073 - ABZR87_RS03565 0.51 +0.6 749,073 - ABZR87_RS03565 0.51 +0.9 749,073 - ABZR87_RS03565 0.51 -4.0 749,157 - ABZR87_RS03565 0.65 -0.4 749,157 - ABZR87_RS03565 0.65 -1.2 749,224 - ABZR87_RS03565 0.76 -1.5 749,381 + +1.4 749,381 + -0.2 749,381 + -1.6 749,663 + ABZR87_RS03570 0.13 -1.2 749,664 - ABZR87_RS03570 0.13 +0.6 749,675 + ABZR87_RS03570 0.14 +0.9 749,675 + ABZR87_RS03570 0.14 -0.1 749,675 + ABZR87_RS03570 0.14 +1.5 749,676 - ABZR87_RS03570 0.14 +0.5 749,676 - ABZR87_RS03570 0.14 -0.7 749,676 - ABZR87_RS03570 0.14 -0.3 749,676 - ABZR87_RS03570 0.14 -2.0 749,676 - ABZR87_RS03570 0.14 -0.9 749,754 + ABZR87_RS03570 0.19 -0.1 749,755 - ABZR87_RS03570 0.19 +0.6 749,775 + ABZR87_RS03570 0.21 +0.6 749,776 - ABZR87_RS03570 0.21 +0.2 749,776 - ABZR87_RS03570 0.21 -0.2 749,776 - ABZR87_RS03570 0.21 +0.1 749,776 - ABZR87_RS03570 0.21 +0.2 750,353 + ABZR87_RS03570 0.60 +0.2 750,353 + ABZR87_RS03570 0.60 +0.9 750,353 + ABZR87_RS03570 0.60 -0.2 750,353 + ABZR87_RS03570 0.60 -0.2 750,353 + ABZR87_RS03570 0.60 +1.9 750,354 - ABZR87_RS03570 0.60 +0.1 750,354 - ABZR87_RS03570 0.60 +1.7 750,354 - ABZR87_RS03570 0.60 +1.5 750,371 + ABZR87_RS03570 0.61 -0.3 750,371 + ABZR87_RS03570 0.61 +2.3 750,372 - ABZR87_RS03570 0.61 -0.2 750,372 - ABZR87_RS03570 0.61 -0.5 750,710 - ABZR87_RS03570 0.84 -3.8 750,845 + -0.2 750,845 + +0.0 750,845 + +1.0 750,845 + +1.2 750,845 + +0.6 750,845 + +0.8 750,846 - -0.1 750,846 - +0.1 750,846 - -0.5 750,846 - -0.8 750,846 - +0.7 750,875 + +1.3 750,875 + +1.7 750,875 + -0.4 750,875 + -1.1 750,875 + +1.0 750,875 + -1.9 750,875 + +0.5 750,876 - -1.0 750,876 - -0.1 750,948 + +0.5 750,948 + +1.5 750,949 - +1.5 750,949 - -1.5 750,949 - +0.6 750,949 - -1.9 751,036 + ABZR87_RS03575 0.15 -0.1 751,036 + ABZR87_RS03575 0.15 +0.2 751,036 + ABZR87_RS03575 0.15 +0.3 751,036 + ABZR87_RS03575 0.15 -2.7 751,036 + ABZR87_RS03575 0.15 +0.2 751,037 - ABZR87_RS03575 0.15 +0.4 751,037 - ABZR87_RS03575 0.15 +0.1 751,037 - ABZR87_RS03575 0.15 +1.1 751,037 - ABZR87_RS03575 0.15 +1.2 751,037 - ABZR87_RS03575 0.15 +0.0 751,110 + ABZR87_RS03575 0.27 -0.4 751,110 + ABZR87_RS03575 0.27 -0.7 751,111 - ABZR87_RS03575 0.27 -1.0 751,111 - ABZR87_RS03575 0.27 -0.5 751,111 - ABZR87_RS03575 0.27 +1.0 751,125 + ABZR87_RS03575 0.30 -0.2 751,125 + ABZR87_RS03575 0.30 +0.4 751,125 + ABZR87_RS03575 0.30 -2.3 751,125 + ABZR87_RS03575 0.30 -0.9 751,125 + ABZR87_RS03575 0.30 +0.2 751,125 + ABZR87_RS03575 0.30 +0.3 751,125 + ABZR87_RS03575 0.30 -2.8 751,126 - ABZR87_RS03575 0.30 -0.5 751,126 - ABZR87_RS03575 0.30 -0.3 751,126 - ABZR87_RS03575 0.30 -0.1 751,126 - ABZR87_RS03575 0.30 +0.2 751,126 - ABZR87_RS03575 0.30 +0.7 751,126 - ABZR87_RS03575 0.30 -0.3 751,314 + ABZR87_RS03575 0.61 -1.1 751,314 + ABZR87_RS03575 0.61 +1.0 751,315 - ABZR87_RS03575 0.61 -1.3 751,315 - ABZR87_RS03575 0.61 -1.1 751,546 + +1.2 751,547 - +0.8 751,547 - -2.7 751,547 - -0.4 751,602 + +1.6 751,602 + -2.2 751,602 + +0.1 751,602 + -3.7 751,603 - -0.7 751,664 + +0.1 751,664 + -1.0 751,665 - +0.9 751,665 - -0.1 751,665 - -3.4 751,665 - +0.2 751,695 - +1.0 751,722 + +0.2 751,722 + -1.1 751,722 + -2.2 751,722 + +0.1 751,722 + -0.3 751,722 + +0.5 751,722 + -2.6 751,723 - -0.2 751,723 - -0.4 751,723 - -0.9 751,723 - +0.4
Or see this region's nucleotide sequence