Experiment: Varel_Bryant_medium_Glucose with Anhydrotetracycline 0.000390625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4502 and BT4503 are separated by 106 nucleotides BT4503 and BT4504 are separated by 215 nucleotides BT4504 and BT4505 overlap by 6 nucleotides BT4505 and BT4506 are separated by 21 nucleotides
BT4502: BT4502 - conserved hypothetical protein (NCBI ptt file), at 5,918,122 to 5,918,652
BT4502
BT4503: BT4503 - conserved hypothetical protein (NCBI ptt file), at 5,918,759 to 5,919,223
BT4503
BT4504: BT4504 - conserved hypothetical protein (NCBI ptt file), at 5,919,439 to 5,920,113
BT4504
BT4505: BT4505 - hypothetical protein (NCBI ptt file), at 5,920,108 to 5,920,650
BT4505
BT4506: BT4506 - putative acetyltransferase (NCBI ptt file), at 5,920,672 to 5,922,048
BT4506
Position (kb) 5919
5920
5921 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5918.477 kb on + strand, within BT4502 at 5918.502 kb on + strand, within BT4502 at 5918.692 kb on + strand at 5918.692 kb on + strand at 5918.733 kb on + strand at 5918.733 kb on + strand at 5918.733 kb on + strand at 5918.733 kb on + strand at 5918.733 kb on + strand at 5918.734 kb on - strand at 5918.774 kb on - strand at 5918.901 kb on + strand, within BT4503 at 5918.923 kb on - strand, within BT4503 at 5918.923 kb on - strand, within BT4503 at 5918.942 kb on - strand, within BT4503 at 5919.016 kb on - strand, within BT4503 at 5919.217 kb on + strand at 5919.245 kb on - strand at 5919.281 kb on + strand at 5919.391 kb on - strand at 5919.396 kb on - strand at 5919.402 kb on - strand at 5919.446 kb on + strand at 5919.447 kb on - strand at 5919.585 kb on - strand, within BT4504 at 5919.612 kb on - strand, within BT4504 at 5919.627 kb on - strand, within BT4504 at 5919.801 kb on - strand, within BT4504 at 5919.801 kb on - strand, within BT4504 at 5919.801 kb on - strand, within BT4504 at 5919.859 kb on - strand, within BT4504 at 5919.888 kb on + strand, within BT4504 at 5919.936 kb on + strand, within BT4504 at 5919.936 kb on + strand, within BT4504 at 5919.936 kb on + strand, within BT4504 at 5919.937 kb on - strand, within BT4504 at 5919.937 kb on - strand, within BT4504 at 5919.953 kb on + strand, within BT4504 at 5920.061 kb on + strand at 5920.062 kb on - strand at 5920.092 kb on - strand at 5920.107 kb on - strand at 5920.109 kb on + strand at 5920.218 kb on + strand, within BT4505 at 5920.218 kb on + strand, within BT4505 at 5920.218 kb on + strand, within BT4505 at 5920.219 kb on - strand, within BT4505 at 5920.219 kb on - strand, within BT4505 at 5920.219 kb on - strand, within BT4505 at 5920.366 kb on + strand, within BT4505 at 5920.366 kb on + strand, within BT4505 at 5920.381 kb on + strand, within BT4505 at 5920.382 kb on - strand, within BT4505 at 5920.426 kb on - strand, within BT4505 at 5920.426 kb on - strand, within BT4505 at 5920.438 kb on + strand, within BT4505 at 5920.494 kb on + strand, within BT4505 at 5920.494 kb on + strand, within BT4505 at 5920.587 kb on - strand, within BT4505 at 5920.642 kb on + strand at 5920.643 kb on - strand at 5920.668 kb on + strand at 5920.696 kb on + strand at 5920.842 kb on - strand, within BT4506 at 5920.842 kb on - strand, within BT4506 at 5920.846 kb on + strand, within BT4506 at 5920.847 kb on - strand, within BT4506 at 5920.888 kb on + strand, within BT4506 at 5920.985 kb on + strand, within BT4506 at 5921.007 kb on + strand, within BT4506 at 5921.009 kb on + strand, within BT4506 at 5921.087 kb on + strand, within BT4506 at 5921.087 kb on + strand, within BT4506 at 5921.110 kb on + strand, within BT4506
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Anhydrotetracycline 0.000390625 mM remove 5,918,477 + BT4502 0.67 -0.5 5,918,502 + BT4502 0.72 -1.0 5,918,692 + -1.0 5,918,692 + +0.6 5,918,733 + +1.0 5,918,733 + -0.6 5,918,733 + -1.6 5,918,733 + -0.0 5,918,733 + -0.9 5,918,734 - -0.3 5,918,774 - -0.6 5,918,901 + BT4503 0.31 -1.0 5,918,923 - BT4503 0.35 -1.3 5,918,923 - BT4503 0.35 +1.0 5,918,942 - BT4503 0.39 -1.6 5,919,016 - BT4503 0.55 -1.6 5,919,217 + -0.0 5,919,245 - -1.1 5,919,281 + -2.2 5,919,391 - -0.2 5,919,396 - -0.1 5,919,402 - -1.3 5,919,446 + -0.6 5,919,447 - -2.3 5,919,585 - BT4504 0.22 -1.0 5,919,612 - BT4504 0.26 -0.0 5,919,627 - BT4504 0.28 +1.0 5,919,801 - BT4504 0.54 -0.2 5,919,801 - BT4504 0.54 +1.6 5,919,801 - BT4504 0.54 -1.0 5,919,859 - BT4504 0.62 -0.3 5,919,888 + BT4504 0.67 +1.1 5,919,936 + BT4504 0.74 +0.5 5,919,936 + BT4504 0.74 +0.5 5,919,936 + BT4504 0.74 -0.0 5,919,937 - BT4504 0.74 -0.2 5,919,937 - BT4504 0.74 -0.2 5,919,953 + BT4504 0.76 -0.0 5,920,061 + -0.8 5,920,062 - -0.3 5,920,092 - -0.7 5,920,107 - -2.3 5,920,109 + -0.9 5,920,218 + BT4505 0.20 -1.0 5,920,218 + BT4505 0.20 -2.8 5,920,218 + BT4505 0.20 -1.0 5,920,219 - BT4505 0.20 -1.6 5,920,219 - BT4505 0.20 +2.0 5,920,219 - BT4505 0.20 -0.0 5,920,366 + BT4505 0.48 -1.0 5,920,366 + BT4505 0.48 -1.6 5,920,381 + BT4505 0.50 -0.4 5,920,382 - BT4505 0.50 -0.2 5,920,426 - BT4505 0.59 -2.2 5,920,426 - BT4505 0.59 -1.9 5,920,438 + BT4505 0.61 -2.0 5,920,494 + BT4505 0.71 -0.5 5,920,494 + BT4505 0.71 +1.6 5,920,587 - BT4505 0.88 -2.3 5,920,642 + -1.0 5,920,643 - +0.3 5,920,668 + -0.0 5,920,696 + -0.7 5,920,842 - BT4506 0.12 -2.0 5,920,842 - BT4506 0.12 -1.3 5,920,846 + BT4506 0.13 -2.8 5,920,847 - BT4506 0.13 +1.6 5,920,888 + BT4506 0.16 -1.5 5,920,985 + BT4506 0.23 -1.6 5,921,007 + BT4506 0.24 -1.8 5,921,009 + BT4506 0.24 +1.0 5,921,087 + BT4506 0.30 +0.6 5,921,087 + BT4506 0.30 +0.9 5,921,110 + BT4506 0.32 -1.6
Or see this region's nucleotide sequence