Experiment: RCH2 defined with Zinc 0.016 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_6046 and Pf6N2E2_6047 are separated by 330 nucleotides Pf6N2E2_6047 and Pf6N2E2_6048 are separated by 56 nucleotides Pf6N2E2_6048 and Pf6N2E2_6049 are separated by 355 nucleotides
Pf6N2E2_6046 - hypothetical protein, at 6,866,368 to 6,866,778
_6046
Pf6N2E2_6047 - hypothetical protein, at 6,867,109 to 6,867,405
_6047
Pf6N2E2_6048 - hypothetical protein, at 6,867,462 to 6,867,776
_6048
Pf6N2E2_6049 - hydrolase, haloacid dehalogenase-like family, at 6,868,132 to 6,868,827
_6049
Position (kb)
6867
6868 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 6866.119 kb on - strand at 6866.119 kb on - strand at 6866.127 kb on - strand at 6866.181 kb on + strand at 6866.181 kb on + strand at 6866.181 kb on + strand at 6866.181 kb on + strand at 6866.181 kb on + strand at 6866.182 kb on - strand at 6866.182 kb on - strand at 6866.182 kb on - strand at 6866.185 kb on + strand at 6866.185 kb on + strand at 6866.185 kb on + strand at 6866.185 kb on + strand at 6866.185 kb on + strand at 6866.185 kb on + strand at 6866.186 kb on - strand at 6866.186 kb on - strand at 6866.186 kb on - strand at 6866.186 kb on - strand at 6866.186 kb on - strand at 6866.186 kb on - strand at 6866.186 kb on - strand at 6866.186 kb on - strand at 6866.213 kb on + strand at 6866.213 kb on + strand at 6866.214 kb on - strand at 6866.254 kb on - strand at 6866.306 kb on + strand at 6866.364 kb on + strand at 6866.365 kb on - strand at 6866.365 kb on - strand at 6866.393 kb on + strand at 6866.405 kb on + strand at 6866.405 kb on + strand at 6866.406 kb on - strand at 6866.406 kb on - strand at 6866.406 kb on - strand at 6866.406 kb on - strand at 6866.406 kb on - strand at 6866.471 kb on + strand, within Pf6N2E2_6046 at 6866.471 kb on + strand, within Pf6N2E2_6046 at 6866.471 kb on + strand, within Pf6N2E2_6046 at 6866.472 kb on - strand, within Pf6N2E2_6046 at 6866.472 kb on - strand, within Pf6N2E2_6046 at 6866.472 kb on - strand, within Pf6N2E2_6046 at 6866.753 kb on - strand at 6866.753 kb on - strand at 6867.002 kb on - strand at 6867.002 kb on - strand at 6867.003 kb on + strand at 6867.003 kb on + strand at 6867.003 kb on + strand at 6867.003 kb on + strand at 6867.003 kb on + strand at 6867.003 kb on + strand at 6867.004 kb on - strand at 6867.004 kb on - strand at 6867.004 kb on - strand at 6867.004 kb on - strand at 6867.004 kb on - strand at 6867.004 kb on - strand at 6867.004 kb on - strand at 6867.004 kb on - strand at 6867.004 kb on - strand at 6867.004 kb on - strand at 6867.004 kb on - strand at 6867.004 kb on - strand at 6867.004 kb on - strand at 6867.084 kb on + strand at 6867.084 kb on + strand at 6867.084 kb on + strand at 6867.084 kb on + strand at 6867.084 kb on + strand at 6867.084 kb on + strand at 6867.084 kb on + strand at 6867.084 kb on + strand at 6867.084 kb on + strand at 6867.084 kb on + strand at 6867.084 kb on + strand at 6867.084 kb on + strand at 6867.084 kb on + strand at 6867.085 kb on - strand at 6867.085 kb on - strand at 6867.085 kb on - strand at 6867.085 kb on - strand at 6867.085 kb on - strand at 6867.085 kb on - strand at 6867.085 kb on - strand at 6867.105 kb on + strand at 6867.105 kb on + strand at 6867.105 kb on + strand at 6867.105 kb on + strand at 6867.105 kb on + strand at 6867.106 kb on - strand at 6867.106 kb on - strand at 6867.106 kb on - strand at 6867.106 kb on - strand at 6867.247 kb on + strand, within Pf6N2E2_6047 at 6867.324 kb on - strand, within Pf6N2E2_6047 at 6867.467 kb on + strand at 6867.874 kb on + strand at 6867.955 kb on - strand at 6868.216 kb on + strand, within Pf6N2E2_6049 at 6868.216 kb on + strand, within Pf6N2E2_6049 at 6868.216 kb on + strand, within Pf6N2E2_6049 at 6868.217 kb on - strand, within Pf6N2E2_6049 at 6868.217 kb on - strand, within Pf6N2E2_6049 at 6868.217 kb on - strand, within Pf6N2E2_6049 at 6868.217 kb on - strand, within Pf6N2E2_6049 at 6868.217 kb on - strand, within Pf6N2E2_6049 at 6868.217 kb on - strand, within Pf6N2E2_6049 at 6868.319 kb on - strand, within Pf6N2E2_6049 at 6868.319 kb on - strand, within Pf6N2E2_6049
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 defined with Zinc 0.016 mM remove 6,866,119 - -0.1 6,866,119 - -0.6 6,866,127 - +0.2 6,866,181 + +0.8 6,866,181 + -0.0 6,866,181 + -0.7 6,866,181 + +0.0 6,866,181 + -1.3 6,866,182 - -0.2 6,866,182 - +1.4 6,866,182 - +0.1 6,866,185 + +0.6 6,866,185 + +0.9 6,866,185 + +1.0 6,866,185 + +0.1 6,866,185 + +0.3 6,866,185 + +0.1 6,866,186 - +0.9 6,866,186 - +0.1 6,866,186 - +0.1 6,866,186 - -0.3 6,866,186 - -0.3 6,866,186 - -0.4 6,866,186 - +0.6 6,866,186 - -0.2 6,866,213 + +0.2 6,866,213 + +0.1 6,866,214 - +0.8 6,866,254 - +0.9 6,866,306 + +0.7 6,866,364 + -0.2 6,866,365 - -1.0 6,866,365 - +1.2 6,866,393 + -0.4 6,866,405 + +0.2 6,866,405 + +0.8 6,866,406 - +0.3 6,866,406 - -0.6 6,866,406 - +1.5 6,866,406 - -0.4 6,866,406 - -0.6 6,866,471 + Pf6N2E2_6046 0.25 +0.3 6,866,471 + Pf6N2E2_6046 0.25 -0.2 6,866,471 + Pf6N2E2_6046 0.25 -0.3 6,866,472 - Pf6N2E2_6046 0.25 -2.3 6,866,472 - Pf6N2E2_6046 0.25 -0.7 6,866,472 - Pf6N2E2_6046 0.25 +0.4 6,866,753 - -0.5 6,866,753 - +0.4 6,867,002 - -1.3 6,867,002 - +0.2 6,867,003 + +0.9 6,867,003 + +0.0 6,867,003 + -0.6 6,867,003 + -0.8 6,867,003 + +1.4 6,867,003 + +0.1 6,867,004 - -1.8 6,867,004 - -0.4 6,867,004 - -1.0 6,867,004 - +0.3 6,867,004 - +0.0 6,867,004 - +1.2 6,867,004 - -2.1 6,867,004 - +0.3 6,867,004 - +0.6 6,867,004 - +0.7 6,867,004 - +0.5 6,867,004 - -0.2 6,867,004 - +0.6 6,867,084 + -1.2 6,867,084 + -1.8 6,867,084 + +0.0 6,867,084 + -0.3 6,867,084 + -2.8 6,867,084 + -0.5 6,867,084 + +0.8 6,867,084 + -0.7 6,867,084 + +1.1 6,867,084 + -0.5 6,867,084 + +0.6 6,867,084 + -0.1 6,867,084 + +1.6 6,867,085 - +0.2 6,867,085 - -0.0 6,867,085 - -0.4 6,867,085 - +0.3 6,867,085 - -0.7 6,867,085 - +0.2 6,867,085 - -0.2 6,867,105 + -0.4 6,867,105 + -2.0 6,867,105 + +0.3 6,867,105 + +0.2 6,867,105 + -0.0 6,867,106 - -0.6 6,867,106 - -1.7 6,867,106 - -1.1 6,867,106 - -0.2 6,867,247 + Pf6N2E2_6047 0.46 -0.7 6,867,324 - Pf6N2E2_6047 0.72 -1.2 6,867,467 + -2.0 6,867,874 + -1.4 6,867,955 - -1.8 6,868,216 + Pf6N2E2_6049 0.12 -0.4 6,868,216 + Pf6N2E2_6049 0.12 -1.1 6,868,216 + Pf6N2E2_6049 0.12 -0.5 6,868,217 - Pf6N2E2_6049 0.12 +1.5 6,868,217 - Pf6N2E2_6049 0.12 +1.4 6,868,217 - Pf6N2E2_6049 0.12 -1.0 6,868,217 - Pf6N2E2_6049 0.12 +0.2 6,868,217 - Pf6N2E2_6049 0.12 -0.2 6,868,217 - Pf6N2E2_6049 0.12 -0.4 6,868,319 - Pf6N2E2_6049 0.27 +0.3 6,868,319 - Pf6N2E2_6049 0.27 +0.1
Or see this region's nucleotide sequence