Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004750 and ABIE53_004751 are separated by 117 nucleotides ABIE53_004751 and ABIE53_004752 are separated by 15 nucleotides
ABIE53_004750: ABIE53_004750 - putative spermidine/putrescine transport system substrate-binding protein, at 953,630 to 954,679
_004750
ABIE53_004751: ABIE53_004751 - putative spermidine/putrescine transport system permease protein, at 954,797 to 956,074
_004751
ABIE53_004752: ABIE53_004752 - putative spermidine/putrescine transport system permease protein, at 956,090 to 956,929
_004752
Position (kb) 954
955
956
957 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 953.820 kb on - strand, within ABIE53_004750 at 953.930 kb on + strand, within ABIE53_004750 at 954.035 kb on + strand, within ABIE53_004750 at 954.035 kb on + strand, within ABIE53_004750 at 954.038 kb on - strand, within ABIE53_004750 at 954.134 kb on + strand, within ABIE53_004750 at 954.135 kb on - strand, within ABIE53_004750 at 954.135 kb on - strand, within ABIE53_004750 at 954.135 kb on - strand, within ABIE53_004750 at 954.135 kb on - strand, within ABIE53_004750 at 954.135 kb on - strand, within ABIE53_004750 at 954.185 kb on + strand, within ABIE53_004750 at 954.185 kb on + strand, within ABIE53_004750 at 954.185 kb on + strand, within ABIE53_004750 at 954.186 kb on - strand, within ABIE53_004750 at 954.186 kb on - strand, within ABIE53_004750 at 954.326 kb on + strand, within ABIE53_004750 at 954.327 kb on - strand, within ABIE53_004750 at 954.327 kb on - strand, within ABIE53_004750 at 954.328 kb on + strand, within ABIE53_004750 at 954.328 kb on + strand, within ABIE53_004750 at 954.329 kb on - strand, within ABIE53_004750 at 954.391 kb on + strand, within ABIE53_004750 at 954.391 kb on + strand, within ABIE53_004750 at 954.391 kb on + strand, within ABIE53_004750 at 954.392 kb on - strand, within ABIE53_004750 at 954.392 kb on - strand, within ABIE53_004750 at 954.392 kb on - strand, within ABIE53_004750 at 954.395 kb on + strand, within ABIE53_004750 at 954.395 kb on + strand, within ABIE53_004750 at 954.395 kb on + strand, within ABIE53_004750 at 954.395 kb on + strand, within ABIE53_004750 at 954.396 kb on - strand, within ABIE53_004750 at 954.464 kb on + strand, within ABIE53_004750 at 954.494 kb on + strand, within ABIE53_004750 at 954.495 kb on - strand, within ABIE53_004750 at 954.512 kb on + strand, within ABIE53_004750 at 954.512 kb on + strand, within ABIE53_004750 at 954.512 kb on + strand, within ABIE53_004750 at 954.677 kb on + strand at 954.677 kb on + strand at 954.677 kb on + strand at 954.678 kb on - strand at 954.678 kb on - strand at 954.678 kb on - strand at 954.678 kb on - strand at 954.678 kb on - strand at 954.678 kb on - strand at 954.678 kb on - strand at 954.756 kb on + strand at 954.802 kb on + strand at 954.802 kb on + strand at 954.802 kb on + strand at 954.803 kb on - strand at 954.803 kb on - strand at 954.803 kb on - strand at 954.803 kb on - strand at 954.803 kb on - strand at 955.009 kb on + strand, within ABIE53_004751 at 955.010 kb on - strand, within ABIE53_004751 at 955.010 kb on - strand, within ABIE53_004751 at 955.010 kb on - strand, within ABIE53_004751 at 955.064 kb on + strand, within ABIE53_004751 at 955.065 kb on - strand, within ABIE53_004751 at 955.065 kb on - strand, within ABIE53_004751 at 955.155 kb on - strand, within ABIE53_004751 at 955.286 kb on + strand, within ABIE53_004751 at 955.331 kb on + strand, within ABIE53_004751 at 955.331 kb on + strand, within ABIE53_004751 at 955.331 kb on + strand, within ABIE53_004751 at 955.331 kb on + strand, within ABIE53_004751 at 955.406 kb on + strand, within ABIE53_004751 at 955.406 kb on + strand, within ABIE53_004751 at 955.406 kb on + strand, within ABIE53_004751 at 955.407 kb on - strand, within ABIE53_004751 at 955.407 kb on - strand, within ABIE53_004751 at 955.407 kb on - strand, within ABIE53_004751 at 955.450 kb on + strand, within ABIE53_004751 at 955.451 kb on - strand, within ABIE53_004751 at 955.685 kb on + strand, within ABIE53_004751 at 955.686 kb on - strand, within ABIE53_004751 at 955.688 kb on - strand, within ABIE53_004751 at 955.688 kb on - strand, within ABIE53_004751 at 955.733 kb on + strand, within ABIE53_004751 at 955.734 kb on - strand, within ABIE53_004751 at 955.734 kb on - strand, within ABIE53_004751 at 955.764 kb on - strand, within ABIE53_004751 at 955.820 kb on + strand, within ABIE53_004751 at 955.820 kb on + strand, within ABIE53_004751 at 955.820 kb on + strand, within ABIE53_004751 at 955.820 kb on + strand, within ABIE53_004751 at 955.821 kb on - strand, within ABIE53_004751 at 955.821 kb on - strand, within ABIE53_004751 at 955.821 kb on - strand, within ABIE53_004751 at 955.821 kb on - strand, within ABIE53_004751 at 955.821 kb on - strand, within ABIE53_004751 at 955.821 kb on - strand, within ABIE53_004751 at 955.821 kb on - strand, within ABIE53_004751 at 955.821 kb on - strand, within ABIE53_004751 at 955.821 kb on - strand, within ABIE53_004751 at 955.821 kb on - strand, within ABIE53_004751 at 955.821 kb on - strand, within ABIE53_004751 at 955.887 kb on - strand, within ABIE53_004751 at 955.887 kb on - strand, within ABIE53_004751 at 955.889 kb on + strand, within ABIE53_004751 at 955.889 kb on + strand, within ABIE53_004751 at 955.889 kb on + strand, within ABIE53_004751 at 955.889 kb on + strand, within ABIE53_004751 at 955.889 kb on + strand, within ABIE53_004751 at 955.889 kb on + strand, within ABIE53_004751 at 955.890 kb on - strand, within ABIE53_004751 at 955.890 kb on - strand, within ABIE53_004751 at 955.890 kb on - strand, within ABIE53_004751 at 955.890 kb on - strand, within ABIE53_004751 at 955.937 kb on + strand, within ABIE53_004751 at 955.937 kb on + strand, within ABIE53_004751 at 955.937 kb on + strand, within ABIE53_004751 at 955.938 kb on - strand, within ABIE53_004751 at 955.940 kb on + strand, within ABIE53_004751 at 955.940 kb on + strand, within ABIE53_004751 at 955.940 kb on + strand, within ABIE53_004751 at 955.940 kb on + strand, within ABIE53_004751 at 955.940 kb on + strand, within ABIE53_004751 at 955.940 kb on + strand, within ABIE53_004751 at 955.940 kb on + strand, within ABIE53_004751 at 955.941 kb on - strand, within ABIE53_004751 at 955.941 kb on - strand, within ABIE53_004751 at 955.941 kb on - strand, within ABIE53_004751 at 955.941 kb on - strand, within ABIE53_004751 at 955.949 kb on + strand at 955.950 kb on - strand at 955.950 kb on - strand at 956.027 kb on + strand at 956.027 kb on + strand at 956.027 kb on + strand at 956.027 kb on + strand at 956.027 kb on + strand at 956.027 kb on + strand at 956.027 kb on + strand at 956.027 kb on + strand at 956.028 kb on - strand at 956.028 kb on - strand at 956.028 kb on - strand at 956.028 kb on - strand at 956.028 kb on - strand at 956.028 kb on - strand at 956.028 kb on - strand at 956.036 kb on + strand at 956.036 kb on + strand at 956.036 kb on + strand at 956.036 kb on + strand at 956.036 kb on + strand at 956.036 kb on + strand at 956.037 kb on - strand at 956.037 kb on - strand at 956.083 kb on + strand at 956.147 kb on + strand at 956.148 kb on - strand at 956.148 kb on - strand at 956.186 kb on + strand, within ABIE53_004752 at 956.186 kb on + strand, within ABIE53_004752 at 956.187 kb on - strand, within ABIE53_004752 at 956.236 kb on + strand, within ABIE53_004752 at 956.236 kb on + strand, within ABIE53_004752 at 956.237 kb on - strand, within ABIE53_004752 at 956.237 kb on - strand, within ABIE53_004752 at 956.250 kb on - strand, within ABIE53_004752 at 956.311 kb on + strand, within ABIE53_004752 at 956.312 kb on - strand, within ABIE53_004752 at 956.312 kb on - strand, within ABIE53_004752 at 956.326 kb on + strand, within ABIE53_004752 at 956.326 kb on + strand, within ABIE53_004752 at 956.332 kb on + strand, within ABIE53_004752 at 956.333 kb on - strand, within ABIE53_004752 at 956.356 kb on - strand, within ABIE53_004752 at 956.356 kb on - strand, within ABIE53_004752 at 956.486 kb on + strand, within ABIE53_004752 at 956.486 kb on + strand, within ABIE53_004752 at 956.487 kb on - strand, within ABIE53_004752 at 956.487 kb on - strand, within ABIE53_004752 at 956.487 kb on - strand, within ABIE53_004752 at 956.487 kb on - strand, within ABIE53_004752 at 956.487 kb on - strand, within ABIE53_004752 at 956.487 kb on - strand, within ABIE53_004752 at 956.487 kb on - strand, within ABIE53_004752 at 956.518 kb on + strand, within ABIE53_004752 at 956.518 kb on + strand, within ABIE53_004752 at 956.518 kb on + strand, within ABIE53_004752 at 956.518 kb on + strand, within ABIE53_004752 at 956.518 kb on + strand, within ABIE53_004752 at 956.519 kb on - strand, within ABIE53_004752 at 956.519 kb on - strand, within ABIE53_004752 at 956.519 kb on - strand, within ABIE53_004752 at 956.519 kb on - strand, within ABIE53_004752 at 956.519 kb on - strand, within ABIE53_004752 at 956.522 kb on + strand, within ABIE53_004752 at 956.522 kb on + strand, within ABIE53_004752 at 956.522 kb on + strand, within ABIE53_004752 at 956.522 kb on + strand, within ABIE53_004752 at 956.522 kb on + strand, within ABIE53_004752 at 956.522 kb on + strand, within ABIE53_004752 at 956.522 kb on + strand, within ABIE53_004752 at 956.522 kb on + strand, within ABIE53_004752 at 956.523 kb on - strand, within ABIE53_004752 at 956.523 kb on - strand, within ABIE53_004752 at 956.523 kb on - strand, within ABIE53_004752 at 956.523 kb on - strand, within ABIE53_004752 at 956.523 kb on - strand, within ABIE53_004752 at 956.523 kb on - strand, within ABIE53_004752 at 956.523 kb on - strand, within ABIE53_004752 at 956.523 kb on - strand, within ABIE53_004752 at 956.523 kb on - strand, within ABIE53_004752 at 956.523 kb on - strand, within ABIE53_004752 at 956.523 kb on - strand, within ABIE53_004752 at 956.606 kb on + strand, within ABIE53_004752 at 956.607 kb on - strand, within ABIE53_004752 at 956.607 kb on - strand, within ABIE53_004752 at 956.871 kb on + strand at 956.872 kb on - strand at 956.927 kb on + strand at 957.000 kb on + strand at 957.001 kb on - strand at 957.039 kb on + strand at 957.039 kb on + strand at 957.040 kb on - strand at 957.040 kb on - strand at 957.045 kb on + strand at 957.046 kb on - strand at 957.056 kb on - strand at 957.056 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 953,820 - ABIE53_004750 0.18 +0.9 953,930 + ABIE53_004750 0.29 -0.2 954,035 + ABIE53_004750 0.39 +5.4 954,035 + ABIE53_004750 0.39 +1.7 954,038 - ABIE53_004750 0.39 +0.2 954,134 + ABIE53_004750 0.48 +0.9 954,135 - ABIE53_004750 0.48 +2.5 954,135 - ABIE53_004750 0.48 +0.5 954,135 - ABIE53_004750 0.48 -1.1 954,135 - ABIE53_004750 0.48 -0.7 954,135 - ABIE53_004750 0.48 +0.1 954,185 + ABIE53_004750 0.53 +2.4 954,185 + ABIE53_004750 0.53 +1.2 954,185 + ABIE53_004750 0.53 +0.9 954,186 - ABIE53_004750 0.53 +1.2 954,186 - ABIE53_004750 0.53 -0.5 954,326 + ABIE53_004750 0.66 +0.0 954,327 - ABIE53_004750 0.66 +9.3 954,327 - ABIE53_004750 0.66 -0.4 954,328 + ABIE53_004750 0.66 +0.2 954,328 + ABIE53_004750 0.66 +0.8 954,329 - ABIE53_004750 0.67 +2.5 954,391 + ABIE53_004750 0.72 +0.9 954,391 + ABIE53_004750 0.72 -1.7 954,391 + ABIE53_004750 0.72 +1.4 954,392 - ABIE53_004750 0.73 +1.5 954,392 - ABIE53_004750 0.73 +8.3 954,392 - ABIE53_004750 0.73 -1.8 954,395 + ABIE53_004750 0.73 +2.3 954,395 + ABIE53_004750 0.73 -2.0 954,395 + ABIE53_004750 0.73 +0.7 954,395 + ABIE53_004750 0.73 +2.7 954,396 - ABIE53_004750 0.73 -0.3 954,464 + ABIE53_004750 0.79 -0.9 954,494 + ABIE53_004750 0.82 -1.2 954,495 - ABIE53_004750 0.82 -0.1 954,512 + ABIE53_004750 0.84 +0.7 954,512 + ABIE53_004750 0.84 +1.7 954,512 + ABIE53_004750 0.84 -1.8 954,677 + -1.2 954,677 + +0.2 954,677 + -0.6 954,678 - -1.2 954,678 - +0.0 954,678 - -0.7 954,678 - -1.1 954,678 - +0.3 954,678 - -0.3 954,678 - -1.3 954,756 + -0.8 954,802 + -0.6 954,802 + +1.0 954,802 + -1.3 954,803 - -0.7 954,803 - +0.1 954,803 - +1.7 954,803 - +1.1 954,803 - -2.4 955,009 + ABIE53_004751 0.17 +0.6 955,010 - ABIE53_004751 0.17 +1.7 955,010 - ABIE53_004751 0.17 +0.6 955,010 - ABIE53_004751 0.17 +1.3 955,064 + ABIE53_004751 0.21 +6.8 955,065 - ABIE53_004751 0.21 +1.5 955,065 - ABIE53_004751 0.21 +2.9 955,155 - ABIE53_004751 0.28 -1.7 955,286 + ABIE53_004751 0.38 -2.2 955,331 + ABIE53_004751 0.42 +1.2 955,331 + ABIE53_004751 0.42 +0.1 955,331 + ABIE53_004751 0.42 +2.1 955,331 + ABIE53_004751 0.42 +0.1 955,406 + ABIE53_004751 0.48 -1.3 955,406 + ABIE53_004751 0.48 -1.1 955,406 + ABIE53_004751 0.48 -0.2 955,407 - ABIE53_004751 0.48 +0.1 955,407 - ABIE53_004751 0.48 -0.2 955,407 - ABIE53_004751 0.48 -1.4 955,450 + ABIE53_004751 0.51 +1.2 955,451 - ABIE53_004751 0.51 -0.6 955,685 + ABIE53_004751 0.69 -0.0 955,686 - ABIE53_004751 0.70 -1.3 955,688 - ABIE53_004751 0.70 +1.5 955,688 - ABIE53_004751 0.70 -0.9 955,733 + ABIE53_004751 0.73 +0.3 955,734 - ABIE53_004751 0.73 -0.5 955,734 - ABIE53_004751 0.73 +0.1 955,764 - ABIE53_004751 0.76 +0.1 955,820 + ABIE53_004751 0.80 +0.0 955,820 + ABIE53_004751 0.80 -0.5 955,820 + ABIE53_004751 0.80 +1.7 955,820 + ABIE53_004751 0.80 -0.9 955,821 - ABIE53_004751 0.80 -0.3 955,821 - ABIE53_004751 0.80 +3.7 955,821 - ABIE53_004751 0.80 +1.7 955,821 - ABIE53_004751 0.80 -1.6 955,821 - ABIE53_004751 0.80 -0.2 955,821 - ABIE53_004751 0.80 -0.5 955,821 - ABIE53_004751 0.80 +1.5 955,821 - ABIE53_004751 0.80 -0.1 955,821 - ABIE53_004751 0.80 +2.8 955,821 - ABIE53_004751 0.80 +2.5 955,821 - ABIE53_004751 0.80 +1.2 955,887 - ABIE53_004751 0.85 +2.0 955,887 - ABIE53_004751 0.85 +1.5 955,889 + ABIE53_004751 0.85 +1.3 955,889 + ABIE53_004751 0.85 -1.0 955,889 + ABIE53_004751 0.85 +3.2 955,889 + ABIE53_004751 0.85 +0.2 955,889 + ABIE53_004751 0.85 +1.2 955,889 + ABIE53_004751 0.85 -1.5 955,890 - ABIE53_004751 0.86 -1.0 955,890 - ABIE53_004751 0.86 -0.3 955,890 - ABIE53_004751 0.86 +0.9 955,890 - ABIE53_004751 0.86 -0.9 955,937 + ABIE53_004751 0.89 +1.7 955,937 + ABIE53_004751 0.89 +3.5 955,937 + ABIE53_004751 0.89 -0.1 955,938 - ABIE53_004751 0.89 +1.5 955,940 + ABIE53_004751 0.89 -0.9 955,940 + ABIE53_004751 0.89 +4.2 955,940 + ABIE53_004751 0.89 -1.4 955,940 + ABIE53_004751 0.89 +0.5 955,940 + ABIE53_004751 0.89 +0.7 955,940 + ABIE53_004751 0.89 +4.1 955,940 + ABIE53_004751 0.89 -0.1 955,941 - ABIE53_004751 0.90 -0.1 955,941 - ABIE53_004751 0.90 -0.0 955,941 - ABIE53_004751 0.90 +0.5 955,941 - ABIE53_004751 0.90 +1.4 955,949 + +0.9 955,950 - +5.9 955,950 - +1.2 956,027 + +0.4 956,027 + +3.3 956,027 + +1.0 956,027 + +0.5 956,027 + +2.8 956,027 + +1.9 956,027 + +2.4 956,027 + -1.4 956,028 - +1.5 956,028 - -1.4 956,028 - -0.3 956,028 - +0.5 956,028 - -2.4 956,028 - +0.9 956,028 - -0.3 956,036 + -1.3 956,036 + -0.5 956,036 + +2.6 956,036 + +0.1 956,036 + +6.1 956,036 + -1.9 956,037 - -0.3 956,037 - +0.5 956,083 + +2.1 956,147 + +2.7 956,148 - +0.1 956,148 - -0.1 956,186 + ABIE53_004752 0.11 +0.5 956,186 + ABIE53_004752 0.11 +1.1 956,187 - ABIE53_004752 0.12 +0.1 956,236 + ABIE53_004752 0.17 +0.4 956,236 + ABIE53_004752 0.17 +3.8 956,237 - ABIE53_004752 0.17 +1.9 956,237 - ABIE53_004752 0.17 -0.1 956,250 - ABIE53_004752 0.19 +3.4 956,311 + ABIE53_004752 0.26 +0.1 956,312 - ABIE53_004752 0.26 -1.8 956,312 - ABIE53_004752 0.26 +5.9 956,326 + ABIE53_004752 0.28 +4.0 956,326 + ABIE53_004752 0.28 +1.5 956,332 + ABIE53_004752 0.29 +1.5 956,333 - ABIE53_004752 0.29 +2.0 956,356 - ABIE53_004752 0.32 +1.9 956,356 - ABIE53_004752 0.32 -1.2 956,486 + ABIE53_004752 0.47 +1.5 956,486 + ABIE53_004752 0.47 -2.9 956,487 - ABIE53_004752 0.47 +2.5 956,487 - ABIE53_004752 0.47 +4.2 956,487 - ABIE53_004752 0.47 +1.1 956,487 - ABIE53_004752 0.47 -0.1 956,487 - ABIE53_004752 0.47 +3.3 956,487 - ABIE53_004752 0.47 -1.5 956,487 - ABIE53_004752 0.47 -0.3 956,518 + ABIE53_004752 0.51 +0.1 956,518 + ABIE53_004752 0.51 +0.1 956,518 + ABIE53_004752 0.51 +2.9 956,518 + ABIE53_004752 0.51 -0.9 956,518 + ABIE53_004752 0.51 +3.6 956,519 - ABIE53_004752 0.51 +0.7 956,519 - ABIE53_004752 0.51 +0.5 956,519 - ABIE53_004752 0.51 +1.5 956,519 - ABIE53_004752 0.51 +0.1 956,519 - ABIE53_004752 0.51 -2.1 956,522 + ABIE53_004752 0.51 -0.4 956,522 + ABIE53_004752 0.51 +0.5 956,522 + ABIE53_004752 0.51 +2.2 956,522 + ABIE53_004752 0.51 -0.8 956,522 + ABIE53_004752 0.51 +4.1 956,522 + ABIE53_004752 0.51 -0.4 956,522 + ABIE53_004752 0.51 +0.7 956,522 + ABIE53_004752 0.51 +0.7 956,523 - ABIE53_004752 0.52 -0.9 956,523 - ABIE53_004752 0.52 +2.1 956,523 - ABIE53_004752 0.52 -1.4 956,523 - ABIE53_004752 0.52 +0.5 956,523 - ABIE53_004752 0.52 +0.5 956,523 - ABIE53_004752 0.52 -0.7 956,523 - ABIE53_004752 0.52 -0.9 956,523 - ABIE53_004752 0.52 -1.4 956,523 - ABIE53_004752 0.52 -0.6 956,523 - ABIE53_004752 0.52 -1.1 956,523 - ABIE53_004752 0.52 -0.6 956,606 + ABIE53_004752 0.61 -1.2 956,607 - ABIE53_004752 0.62 +0.9 956,607 - ABIE53_004752 0.62 -0.1 956,871 + -0.5 956,872 - -1.1 956,927 + +0.3 957,000 + +1.9 957,001 - -1.6 957,039 + +0.5 957,039 + -1.0 957,040 - -1.9 957,040 - -0.9 957,045 + -1.3 957,046 - -0.1 957,056 - -0.1 957,056 - +0.4
Or see this region's nucleotide sequence