Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_004410

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE53_004409 and ABIE53_006572 are separated by 41 nucleotidesABIE53_006572 and ABIE53_004410 are separated by 91 nucleotidesABIE53_004410 and ABIE53_004411 are separated by 153 nucleotidesABIE53_004411 and ABIE53_004412 are separated by 49 nucleotides ABIE53_004409: ABIE53_004409 - diguanylate cyclase (GGDEF)-like protein, at 598,175 to 599,674 _004409 ABIE53_006572: ABIE53_006572 - tRNA-Lys, at 599,716 to 599,791 _006572 ABIE53_004410: ABIE53_004410 - HSP20 family protein, at 599,883 to 600,446 _004410 ABIE53_004411: ABIE53_004411 - HSP20 family protein, at 600,600 to 601,019 _004411 ABIE53_004412: ABIE53_004412 - HSP20 family protein, at 601,069 to 601,512 _004412 Position (kb) 599 600 601Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 598.970 kb on + strand, within ABIE53_004409at 598.970 kb on + strand, within ABIE53_004409at 598.971 kb on - strand, within ABIE53_004409at 598.971 kb on - strand, within ABIE53_004409at 598.971 kb on - strand, within ABIE53_004409at 599.033 kb on + strand, within ABIE53_004409at 599.033 kb on + strand, within ABIE53_004409at 599.034 kb on - strand, within ABIE53_004409at 599.306 kb on + strand, within ABIE53_004409at 599.306 kb on + strand, within ABIE53_004409at 599.307 kb on - strand, within ABIE53_004409at 599.318 kb on + strand, within ABIE53_004409at 599.318 kb on + strand, within ABIE53_004409at 599.318 kb on + strand, within ABIE53_004409at 599.318 kb on + strand, within ABIE53_004409at 599.318 kb on + strand, within ABIE53_004409at 599.319 kb on - strand, within ABIE53_004409at 599.319 kb on - strand, within ABIE53_004409at 599.319 kb on - strand, within ABIE53_004409at 599.319 kb on - strand, within ABIE53_004409at 599.319 kb on - strand, within ABIE53_004409at 599.319 kb on - strand, within ABIE53_004409at 599.319 kb on - strand, within ABIE53_004409at 599.443 kb on + strand, within ABIE53_004409at 599.528 kb on + strandat 599.624 kb on + strandat 599.624 kb on + strandat 599.624 kb on + strandat 599.625 kb on - strandat 599.625 kb on - strandat 599.625 kb on - strandat 599.625 kb on - strandat 599.625 kb on - strandat 599.626 kb on + strandat 599.627 kb on - strandat 599.627 kb on - strandat 599.647 kb on + strandat 599.647 kb on + strandat 599.648 kb on - strandat 599.648 kb on - strandat 599.648 kb on - strandat 599.659 kb on + strandat 599.659 kb on + strandat 599.659 kb on + strandat 599.659 kb on + strandat 599.659 kb on + strandat 599.660 kb on - strandat 599.660 kb on - strandat 599.660 kb on - strandat 599.672 kb on + strandat 599.719 kb on + strandat 599.720 kb on - strandat 599.784 kb on - strandat 599.947 kb on - strand, within ABIE53_004410at 600.028 kb on + strand, within ABIE53_004410at 600.028 kb on + strand, within ABIE53_004410at 600.029 kb on - strand, within ABIE53_004410at 600.029 kb on - strand, within ABIE53_004410at 600.069 kb on + strand, within ABIE53_004410at 600.069 kb on + strand, within ABIE53_004410at 600.069 kb on + strand, within ABIE53_004410at 600.070 kb on - strand, within ABIE53_004410at 600.070 kb on - strand, within ABIE53_004410at 600.070 kb on - strand, within ABIE53_004410at 600.070 kb on - strand, within ABIE53_004410at 600.070 kb on - strand, within ABIE53_004410at 600.070 kb on - strand, within ABIE53_004410at 600.070 kb on - strand, within ABIE53_004410at 600.070 kb on - strand, within ABIE53_004410at 600.323 kb on + strand, within ABIE53_004410at 600.362 kb on + strand, within ABIE53_004410at 600.459 kb on + strandat 600.459 kb on + strandat 600.459 kb on + strandat 600.459 kb on + strandat 600.459 kb on + strandat 600.459 kb on + strandat 600.459 kb on + strandat 600.459 kb on + strandat 600.459 kb on + strandat 600.460 kb on - strandat 600.460 kb on - strandat 600.469 kb on - strandat 600.481 kb on + strandat 600.481 kb on + strandat 600.481 kb on + strandat 600.490 kb on + strandat 600.553 kb on + strandat 600.553 kb on + strandat 600.553 kb on + strandat 600.553 kb on + strandat 600.553 kb on + strandat 600.554 kb on - strandat 600.554 kb on - strandat 600.810 kb on - strand, within ABIE53_004411at 600.810 kb on - strand, within ABIE53_004411at 600.811 kb on + strand, within ABIE53_004411at 600.811 kb on + strand, within ABIE53_004411at 600.811 kb on + strand, within ABIE53_004411at 600.811 kb on + strand, within ABIE53_004411at 600.811 kb on + strand, within ABIE53_004411at 600.812 kb on - strand, within ABIE53_004411at 600.812 kb on - strand, within ABIE53_004411at 600.812 kb on - strand, within ABIE53_004411at 600.812 kb on - strand, within ABIE53_004411at 600.812 kb on - strand, within ABIE53_004411at 600.812 kb on - strand, within ABIE53_004411at 600.881 kb on + strand, within ABIE53_004411at 600.881 kb on + strand, within ABIE53_004411at 600.881 kb on + strand, within ABIE53_004411at 600.881 kb on + strand, within ABIE53_004411at 600.882 kb on - strand, within ABIE53_004411at 600.882 kb on - strand, within ABIE53_004411at 601.031 kb on + strandat 601.031 kb on + strandat 601.032 kb on - strandat 601.032 kb on - strandat 601.032 kb on - strandat 601.032 kb on - strandat 601.143 kb on - strand, within ABIE53_004412at 601.143 kb on - strand, within ABIE53_004412at 601.226 kb on + strand, within ABIE53_004412at 601.226 kb on + strand, within ABIE53_004412at 601.226 kb on + strand, within ABIE53_004412at 601.226 kb on + strand, within ABIE53_004412at 601.227 kb on - strand, within ABIE53_004412at 601.309 kb on + strand, within ABIE53_004412at 601.310 kb on - strand, within ABIE53_004412at 601.310 kb on - strand, within ABIE53_004412at 601.310 kb on - strand, within ABIE53_004412at 601.310 kb on - strand, within ABIE53_004412

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
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598,970 + ABIE53_004409 0.53 +2.0
598,970 + ABIE53_004409 0.53 -0.8
598,971 - ABIE53_004409 0.53 -0.3
598,971 - ABIE53_004409 0.53 +2.6
598,971 - ABIE53_004409 0.53 -1.1
599,033 + ABIE53_004409 0.57 +1.6
599,033 + ABIE53_004409 0.57 -0.8
599,034 - ABIE53_004409 0.57 -1.0
599,306 + ABIE53_004409 0.75 +0.6
599,306 + ABIE53_004409 0.75 +0.6
599,307 - ABIE53_004409 0.75 -0.7
599,318 + ABIE53_004409 0.76 -0.6
599,318 + ABIE53_004409 0.76 -1.1
599,318 + ABIE53_004409 0.76 -1.0
599,318 + ABIE53_004409 0.76 +0.6
599,318 + ABIE53_004409 0.76 +4.1
599,319 - ABIE53_004409 0.76 -0.0
599,319 - ABIE53_004409 0.76 +1.0
599,319 - ABIE53_004409 0.76 +1.1
599,319 - ABIE53_004409 0.76 +0.6
599,319 - ABIE53_004409 0.76 -0.7
599,319 - ABIE53_004409 0.76 +4.1
599,319 - ABIE53_004409 0.76 +0.1
599,443 + ABIE53_004409 0.85 -0.1
599,528 + +0.6
599,624 + +1.3
599,624 + +1.6
599,624 + -0.4
599,625 - -1.1
599,625 - +0.9
599,625 - -0.6
599,625 - +0.6
599,625 - -1.3
599,626 + +0.2
599,627 - -0.6
599,627 - -2.4
599,647 + -1.5
599,647 + -1.1
599,648 - -1.4
599,648 - -1.9
599,648 - -1.1
599,659 + -1.5
599,659 + +0.3
599,659 + +2.6
599,659 + -0.1
599,659 + +1.6
599,660 - +0.2
599,660 - +1.7
599,660 - -0.3
599,672 + -0.1
599,719 + +0.2
599,720 - -1.0
599,784 - +2.6
599,947 - ABIE53_004410 0.11 +3.7
600,028 + ABIE53_004410 0.26 +0.2
600,028 + ABIE53_004410 0.26 +0.2
600,029 - ABIE53_004410 0.26 -0.6
600,029 - ABIE53_004410 0.26 +0.6
600,069 + ABIE53_004410 0.33 -1.4
600,069 + ABIE53_004410 0.33 -0.3
600,069 + ABIE53_004410 0.33 -0.0
600,070 - ABIE53_004410 0.33 +1.2
600,070 - ABIE53_004410 0.33 +1.6
600,070 - ABIE53_004410 0.33 -1.7
600,070 - ABIE53_004410 0.33 -0.2
600,070 - ABIE53_004410 0.33 -1.5
600,070 - ABIE53_004410 0.33 -1.1
600,070 - ABIE53_004410 0.33 -1.3
600,070 - ABIE53_004410 0.33 -0.8
600,323 + ABIE53_004410 0.78 -0.4
600,362 + ABIE53_004410 0.85 -1.5
600,459 + -1.5
600,459 + -0.6
600,459 + -0.3
600,459 + +0.6
600,459 + -0.3
600,459 + -0.0
600,459 + -0.9
600,459 + -0.4
600,459 + -3.1
600,460 - -1.6
600,460 - +2.6
600,469 - -0.1
600,481 + +1.2
600,481 + -2.2
600,481 + +0.1
600,490 + -1.6
600,553 + +2.6
600,553 + -1.5
600,553 + +0.6
600,553 + -0.7
600,553 + -2.2
600,554 - -1.3
600,554 - -2.1
600,810 - ABIE53_004411 0.50 -2.9
600,810 - ABIE53_004411 0.50 -0.3
600,811 + ABIE53_004411 0.50 +1.6
600,811 + ABIE53_004411 0.50 -0.0
600,811 + ABIE53_004411 0.50 -0.4
600,811 + ABIE53_004411 0.50 -0.3
600,811 + ABIE53_004411 0.50 +0.6
600,812 - ABIE53_004411 0.50 -3.0
600,812 - ABIE53_004411 0.50 -0.3
600,812 - ABIE53_004411 0.50 +0.2
600,812 - ABIE53_004411 0.50 +0.6
600,812 - ABIE53_004411 0.50 -0.6
600,812 - ABIE53_004411 0.50 +1.0
600,881 + ABIE53_004411 0.67 -0.0
600,881 + ABIE53_004411 0.67 +0.1
600,881 + ABIE53_004411 0.67 +1.6
600,881 + ABIE53_004411 0.67 -1.7
600,882 - ABIE53_004411 0.67 -0.0
600,882 - ABIE53_004411 0.67 -2.4
601,031 + -0.0
601,031 + +1.3
601,032 - -0.8
601,032 - +2.3
601,032 - +0.3
601,032 - -0.4
601,143 - ABIE53_004412 0.17 -0.3
601,143 - ABIE53_004412 0.17 +1.0
601,226 + ABIE53_004412 0.35 +0.2
601,226 + ABIE53_004412 0.35 -0.0
601,226 + ABIE53_004412 0.35 -1.3
601,226 + ABIE53_004412 0.35 +1.4
601,227 - ABIE53_004412 0.36 -0.0
601,309 + ABIE53_004412 0.54 +1.4
601,310 - ABIE53_004412 0.54 +3.6
601,310 - ABIE53_004412 0.54 -1.6
601,310 - ABIE53_004412 0.54 -0.9
601,310 - ABIE53_004412 0.54 +2.6

Or see this region's nucleotide sequence