Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004034 and ABIE53_004035 are separated by 22 nucleotides ABIE53_004035 and ABIE53_004036 overlap by 35 nucleotides ABIE53_004036 and ABIE53_004037 are separated by 3 nucleotides ABIE53_004037 and ABIE53_004038 are separated by 163 nucleotides ABIE53_004038 and ABIE53_004039 are separated by 133 nucleotides
ABIE53_004034: ABIE53_004034 - hypothetical protein, at 191,155 to 191,577
_004034
ABIE53_004035: ABIE53_004035 - putative O-methyltransferase YrrM, at 191,600 to 192,097
_004035
ABIE53_004036: ABIE53_004036 - putative O-methyltransferase YrrM, at 192,063 to 192,269
_004036
ABIE53_004037: ABIE53_004037 - tetratricopeptide (TPR) repeat protein, at 192,273 to 194,471
_004037
ABIE53_004038: ABIE53_004038 - hypothetical protein, at 194,635 to 195,036
_004038
ABIE53_004039: ABIE53_004039 - iron complex outermembrane receptor protein, at 195,170 to 197,470
_004039
Position (kb) 192
193
194
195 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 191.359 kb on + strand, within ABIE53_004034 at 191.360 kb on - strand, within ABIE53_004034 at 191.361 kb on + strand, within ABIE53_004034 at 191.362 kb on - strand, within ABIE53_004034 at 191.499 kb on + strand, within ABIE53_004034 at 191.575 kb on + strand at 191.576 kb on - strand at 191.576 kb on - strand at 191.620 kb on + strand at 191.633 kb on + strand at 191.808 kb on - strand, within ABIE53_004035 at 191.879 kb on + strand, within ABIE53_004035 at 191.880 kb on - strand, within ABIE53_004035 at 192.403 kb on + strand at 192.403 kb on + strand at 192.403 kb on + strand at 192.404 kb on - strand at 192.404 kb on - strand at 192.704 kb on + strand, within ABIE53_004037 at 192.704 kb on + strand, within ABIE53_004037 at 192.705 kb on - strand, within ABIE53_004037 at 192.705 kb on - strand, within ABIE53_004037 at 192.989 kb on + strand, within ABIE53_004037 at 192.990 kb on - strand, within ABIE53_004037 at 193.174 kb on + strand, within ABIE53_004037 at 193.174 kb on + strand, within ABIE53_004037 at 193.246 kb on + strand, within ABIE53_004037 at 193.276 kb on + strand, within ABIE53_004037 at 193.333 kb on + strand, within ABIE53_004037 at 193.333 kb on + strand, within ABIE53_004037 at 193.334 kb on - strand, within ABIE53_004037 at 193.334 kb on - strand, within ABIE53_004037 at 193.449 kb on + strand, within ABIE53_004037 at 193.537 kb on + strand, within ABIE53_004037 at 193.538 kb on - strand, within ABIE53_004037 at 193.655 kb on - strand, within ABIE53_004037 at 193.739 kb on + strand, within ABIE53_004037 at 193.945 kb on + strand, within ABIE53_004037 at 193.946 kb on - strand, within ABIE53_004037 at 193.946 kb on - strand, within ABIE53_004037 at 194.152 kb on + strand, within ABIE53_004037 at 194.152 kb on + strand, within ABIE53_004037 at 194.360 kb on - strand at 194.492 kb on + strand at 194.492 kb on + strand at 194.492 kb on + strand at 194.492 kb on + strand at 194.492 kb on + strand at 194.492 kb on + strand at 194.492 kb on + strand at 194.492 kb on + strand at 194.493 kb on - strand at 194.493 kb on - strand at 194.493 kb on - strand at 194.493 kb on - strand at 194.493 kb on - strand at 194.493 kb on - strand at 194.504 kb on + strand at 194.524 kb on + strand at 194.566 kb on + strand at 194.763 kb on - strand, within ABIE53_004038 at 195.410 kb on + strand, within ABIE53_004039 at 195.410 kb on + strand, within ABIE53_004039 at 195.410 kb on + strand, within ABIE53_004039 at 195.410 kb on + strand, within ABIE53_004039 at 195.410 kb on + strand, within ABIE53_004039 at 195.411 kb on - strand, within ABIE53_004039
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 191,359 + ABIE53_004034 0.48 -1.7 191,360 - ABIE53_004034 0.48 -0.3 191,361 + ABIE53_004034 0.49 -0.5 191,362 - ABIE53_004034 0.49 -0.5 191,499 + ABIE53_004034 0.81 -0.1 191,575 + -1.0 191,576 - +1.5 191,576 - +3.1 191,620 + -0.7 191,633 + +2.2 191,808 - ABIE53_004035 0.42 -0.2 191,879 + ABIE53_004035 0.56 +0.5 191,880 - ABIE53_004035 0.56 -1.3 192,403 + +0.9 192,403 + -0.5 192,403 + +0.2 192,404 - -1.0 192,404 - +0.3 192,704 + ABIE53_004037 0.20 -0.1 192,704 + ABIE53_004037 0.20 -1.0 192,705 - ABIE53_004037 0.20 -1.2 192,705 - ABIE53_004037 0.20 -0.3 192,989 + ABIE53_004037 0.33 -0.5 192,990 - ABIE53_004037 0.33 +0.5 193,174 + ABIE53_004037 0.41 +1.0 193,174 + ABIE53_004037 0.41 +0.4 193,246 + ABIE53_004037 0.44 +4.4 193,276 + ABIE53_004037 0.46 +0.8 193,333 + ABIE53_004037 0.48 +1.0 193,333 + ABIE53_004037 0.48 -0.5 193,334 - ABIE53_004037 0.48 -2.4 193,334 - ABIE53_004037 0.48 -1.6 193,449 + ABIE53_004037 0.53 -0.1 193,537 + ABIE53_004037 0.57 +0.4 193,538 - ABIE53_004037 0.58 +0.2 193,655 - ABIE53_004037 0.63 -1.4 193,739 + ABIE53_004037 0.67 +1.9 193,945 + ABIE53_004037 0.76 +0.5 193,946 - ABIE53_004037 0.76 +2.1 193,946 - ABIE53_004037 0.76 +1.5 194,152 + ABIE53_004037 0.85 +2.1 194,152 + ABIE53_004037 0.85 +0.1 194,360 - -0.1 194,492 + -1.1 194,492 + +0.2 194,492 + -1.1 194,492 + +1.5 194,492 + +0.5 194,492 + -2.0 194,492 + -0.8 194,492 + +1.5 194,493 - +0.3 194,493 - -0.2 194,493 - +0.9 194,493 - +0.0 194,493 - -0.5 194,493 - +1.5 194,504 + +1.5 194,524 + +0.8 194,566 + -1.8 194,763 - ABIE53_004038 0.32 -1.7 195,410 + ABIE53_004039 0.10 -0.3 195,410 + ABIE53_004039 0.10 -2.0 195,410 + ABIE53_004039 0.10 +0.9 195,410 + ABIE53_004039 0.10 -0.7 195,410 + ABIE53_004039 0.10 -0.9 195,411 - ABIE53_004039 0.10 +1.5
Or see this region's nucleotide sequence