Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001824

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
2,060,430	+				-0.6
2,060,430	+				-1.1
2,060,430	+				-0.6
2,060,430	+				+1.6
2,060,431	-				-2.7
2,060,431	-				+1.6
2,060,999	+		ABIE53_001823	0.65	-0.6
2,060,999	+		ABIE53_001823	0.65	-1.6
2,060,999	+		ABIE53_001823	0.65	+0.6
2,061,000	-		ABIE53_001823	0.66	-2.3
2,061,000	-		ABIE53_001823	0.66	-0.4
2,061,000	-		ABIE53_001823	0.66	+0.9
2,061,000	-		ABIE53_001823	0.66	+0.1
2,061,000	-		ABIE53_001823	0.66	+2.4
2,061,451	+				-2.2
2,061,451	+				-0.3
2,061,452	-				-1.2
2,061,452	-				+2.4
2,061,465	+				+1.0
2,061,465	+				-0.3
2,061,465	+				+0.6
2,061,465	+				-1.3
2,061,466	-				-0.7
2,061,466	-				-0.7
2,061,466	-				-0.4
2,061,503	+		ABIE53_001824	0.12	-0.9
2,061,503	+		ABIE53_001824	0.12	-0.3
2,061,555	+		ABIE53_001824	0.15	-2.7
2,061,555	+		ABIE53_001824	0.15	-1.6
2,061,584	+		ABIE53_001824	0.17	-1.0
2,061,584	+		ABIE53_001824	0.17	-1.1
2,061,584	+		ABIE53_001824	0.17	-0.6
2,061,584	+		ABIE53_001824	0.17	-1.4
2,061,584	+		ABIE53_001824	0.17	+1.4
2,061,584	+		ABIE53_001824	0.17	-0.4
2,061,584	+		ABIE53_001824	0.17	+0.8
2,061,584	+		ABIE53_001824	0.17	+1.1
2,061,584	+		ABIE53_001824	0.17	-0.1
2,061,584	+		ABIE53_001824	0.17	+0.4
2,061,584	+		ABIE53_001824	0.17	-1.0
2,061,584	+		ABIE53_001824	0.17	-1.5
2,061,584	+		ABIE53_001824	0.17	+1.0
2,061,584	+		ABIE53_001824	0.17	-1.1
2,061,584	+		ABIE53_001824	0.17	+0.4
2,061,584	+		ABIE53_001824	0.17	+0.9
2,061,584	+		ABIE53_001824	0.17	-0.4
2,061,584	+		ABIE53_001824	0.17	+1.4
2,061,584	+		ABIE53_001824	0.17	+1.2
2,061,584	+		ABIE53_001824	0.17	-1.0
2,061,584	+		ABIE53_001824	0.17	-1.4
2,061,584	+		ABIE53_001824	0.17	+0.1
2,061,584	+		ABIE53_001824	0.17	+0.7
2,061,584	+		ABIE53_001824	0.17	+1.0
2,061,584	+		ABIE53_001824	0.17	-1.5
2,061,584	+		ABIE53_001824	0.17	-1.0
2,061,584	+		ABIE53_001824	0.17	+0.1
2,061,584	+		ABIE53_001824	0.17	-0.9
2,061,584	+		ABIE53_001824	0.17	+0.3
2,061,584	+		ABIE53_001824	0.17	+0.9
2,061,584	+		ABIE53_001824	0.17	+0.7
2,061,584	+		ABIE53_001824	0.17	-0.1
2,061,584	+		ABIE53_001824	0.17	-0.1
2,061,584	+		ABIE53_001824	0.17	-0.1
2,061,584	+		ABIE53_001824	0.17	-0.6
2,061,584	+		ABIE53_001824	0.17	-0.6
2,061,584	+		ABIE53_001824	0.17	-2.2
2,061,584	+		ABIE53_001824	0.17	+0.2
2,061,584	+		ABIE53_001824	0.17	-0.7
2,061,584	+		ABIE53_001824	0.17	-0.6
2,061,584	+		ABIE53_001824	0.17	+0.1
2,061,584	+		ABIE53_001824	0.17	-1.0
2,061,584	+		ABIE53_001824	0.17	-0.1
2,061,584	+		ABIE53_001824	0.17	+0.4
2,061,584	+		ABIE53_001824	0.17	+0.1
2,061,584	+		ABIE53_001824	0.17	+0.4
2,061,584	+		ABIE53_001824	0.17	+0.6
2,061,584	+		ABIE53_001824	0.17	+2.0
2,061,584	+		ABIE53_001824	0.17	-1.0
2,061,584	+		ABIE53_001824	0.17	-0.4
2,061,584	+		ABIE53_001824	0.17	-1.1
2,061,584	+		ABIE53_001824	0.17	-2.3
2,061,584	+		ABIE53_001824	0.17	+2.0
2,061,584	+		ABIE53_001824	0.17	-1.1
2,061,584	+		ABIE53_001824	0.17	-0.1
2,061,584	+		ABIE53_001824	0.17	-1.1
2,061,584	+		ABIE53_001824	0.17	+0.9
2,061,584	+		ABIE53_001824	0.17	+0.6
2,061,584	+		ABIE53_001824	0.17	+0.4
2,061,584	+		ABIE53_001824	0.17	+0.1
2,061,584	+		ABIE53_001824	0.17	-0.4
2,061,584	+		ABIE53_001824	0.17	+0.4
2,061,584	+		ABIE53_001824	0.17	-0.1
2,061,584	+		ABIE53_001824	0.17	+0.4
2,061,584	+		ABIE53_001824	0.17	+0.4
2,061,584	+		ABIE53_001824	0.17	-0.8
2,061,585	-		ABIE53_001824	0.17	+1.7
2,061,585	-		ABIE53_001824	0.17	+1.4
2,061,585	-		ABIE53_001824	0.17	+0.4
2,061,585	-		ABIE53_001824	0.17	+0.5
2,061,585	-		ABIE53_001824	0.17	-1.3
2,061,585	-		ABIE53_001824	0.17	+0.1
2,061,585	-		ABIE53_001824	0.17	+0.7
2,061,585	-		ABIE53_001824	0.17	+1.0
2,061,585	-		ABIE53_001824	0.17	+0.9
2,061,585	-		ABIE53_001824	0.17	+2.4
2,061,585	-		ABIE53_001824	0.17	-0.1
2,061,585	-		ABIE53_001824	0.17	-0.0
2,061,585	-		ABIE53_001824	0.17	+1.4
2,061,585	-		ABIE53_001824	0.17	-0.1
2,061,585	-		ABIE53_001824	0.17	-0.4
2,061,585	-		ABIE53_001824	0.17	-0.4
2,061,585	-		ABIE53_001824	0.17	+3.4
2,061,585	-		ABIE53_001824	0.17	-0.2
2,061,585	-		ABIE53_001824	0.17	+0.2
2,061,585	-		ABIE53_001824	0.17	+0.4
2,061,585	-		ABIE53_001824	0.17	-0.4
2,061,585	-		ABIE53_001824	0.17	+0.4
2,061,585	-		ABIE53_001824	0.17	+0.0
2,061,585	-		ABIE53_001824	0.17	+0.6
2,061,585	-		ABIE53_001824	0.17	-1.9
2,061,585	-		ABIE53_001824	0.17	+0.9
2,061,585	-		ABIE53_001824	0.17	-0.9
2,061,585	-		ABIE53_001824	0.17	+1.4
2,061,585	-		ABIE53_001824	0.17	-1.0
2,061,585	-		ABIE53_001824	0.17	+0.5
2,061,585	-		ABIE53_001824	0.17	-0.7
2,061,585	-		ABIE53_001824	0.17	-0.1
2,061,585	-		ABIE53_001824	0.17	-0.9
2,061,585	-		ABIE53_001824	0.17	-1.1
2,061,585	-		ABIE53_001824	0.17	-1.4
2,061,585	-		ABIE53_001824	0.17	+1.0
2,061,585	-		ABIE53_001824	0.17	-1.0
2,061,585	-		ABIE53_001824	0.17	+1.0
2,061,585	-		ABIE53_001824	0.17	+0.6
2,061,585	-		ABIE53_001824	0.17	+0.7
2,061,585	-		ABIE53_001824	0.17	+0.4
2,061,585	-		ABIE53_001824	0.17	+0.4
2,061,585	-		ABIE53_001824	0.17	-1.5
2,061,585	-		ABIE53_001824	0.17	-0.8
2,061,585	-		ABIE53_001824	0.17	+1.4
2,061,585	-		ABIE53_001824	0.17	+2.2
2,061,586	+		ABIE53_001824	0.17	+0.9
2,061,586	+		ABIE53_001824	0.17	+0.4
2,061,586	+		ABIE53_001824	0.17	-0.2
2,061,586	+		ABIE53_001824	0.17	-1.7
2,061,586	+		ABIE53_001824	0.17	+0.4
2,061,586	+		ABIE53_001824	0.17	-0.8
2,061,586	+		ABIE53_001824	0.17	-0.9
2,061,586	+		ABIE53_001824	0.17	-0.6
2,061,586	+		ABIE53_001824	0.17	+0.3
2,061,586	+		ABIE53_001824	0.17	+0.1
2,061,586	+		ABIE53_001824	0.17	-0.1
2,061,586	+		ABIE53_001824	0.17	-1.5
2,061,587	-		ABIE53_001824	0.17	+1.4
2,061,587	-		ABIE53_001824	0.17	-0.6
2,061,587	-		ABIE53_001824	0.17	-0.3
2,061,587	-		ABIE53_001824	0.17	-0.8
2,061,587	-		ABIE53_001824	0.17	+0.4
2,061,587	-		ABIE53_001824	0.17	-1.9
2,061,627	+		ABIE53_001824	0.20	-1.9
2,061,627	+		ABIE53_001824	0.20	-0.6
2,061,628	-		ABIE53_001824	0.20	+0.2
2,061,628	-		ABIE53_001824	0.20	+0.6
2,061,850	+		ABIE53_001824	0.34	-0.9
2,061,850	+		ABIE53_001824	0.34	-0.9
2,061,850	+		ABIE53_001824	0.34	+2.4
2,061,850	+		ABIE53_001824	0.34	+2.3
2,061,850	+		ABIE53_001824	0.34	+1.1
2,061,850	+		ABIE53_001824	0.34	+1.0
2,061,850	+		ABIE53_001824	0.34	+0.8
2,061,850	+		ABIE53_001824	0.34	-0.2
2,061,850	+		ABIE53_001824	0.34	-0.7
2,061,851	-		ABIE53_001824	0.34	+0.4
2,061,851	-		ABIE53_001824	0.34	-0.7
2,061,851	-		ABIE53_001824	0.34	+0.9
2,061,851	-		ABIE53_001824	0.34	+0.7
2,061,851	-		ABIE53_001824	0.34	-1.1
2,061,851	-		ABIE53_001824	0.34	+1.4
2,061,851	-		ABIE53_001824	0.34	+0.1
2,061,858	+		ABIE53_001824	0.34	+0.9
2,061,859	-		ABIE53_001824	0.35	-0.4
2,061,859	-		ABIE53_001824	0.35	+2.9
2,061,898	+		ABIE53_001824	0.37	+2.4
2,061,898	+		ABIE53_001824	0.37	+1.1
2,061,898	+		ABIE53_001824	0.37	+1.3
2,061,898	+		ABIE53_001824	0.37	-1.9
2,061,898	+		ABIE53_001824	0.37	-0.4
2,061,899	-		ABIE53_001824	0.37	-0.2
2,061,899	-		ABIE53_001824	0.37	+0.0
2,061,899	-		ABIE53_001824	0.37	+2.4
2,062,093	+		ABIE53_001824	0.50	-0.1
2,062,276	+		ABIE53_001824	0.62	+2.8
2,062,277	-		ABIE53_001824	0.62	-2.1
2,062,288	+		ABIE53_001824	0.62	+0.4
2,062,288	+		ABIE53_001824	0.62	-1.3
2,062,288	+		ABIE53_001824	0.62	+0.2
2,062,288	+		ABIE53_001824	0.62	-0.6
2,062,289	-		ABIE53_001824	0.62	+0.1
2,062,289	-		ABIE53_001824	0.62	-0.6
2,062,289	-		ABIE53_001824	0.62	-0.4
2,062,486	+		ABIE53_001824	0.75	-0.4
2,062,486	+		ABIE53_001824	0.75	+1.7
2,062,487	-		ABIE53_001824	0.75	+1.4
2,062,487	-		ABIE53_001824	0.75	+0.4
2,062,487	-		ABIE53_001824	0.75	-0.3
2,062,660	+		ABIE53_001824	0.86	-0.9
2,062,660	+		ABIE53_001824	0.86	-0.4
2,062,660	+		ABIE53_001824	0.86	-1.9
2,062,660	+		ABIE53_001824	0.86	+3.4
2,062,661	-		ABIE53_001824	0.86	+0.9
2,062,661	-		ABIE53_001824	0.86	+1.4
2,062,661	-		ABIE53_001824	0.86	-0.6
2,062,661	-		ABIE53_001824	0.86	-0.1
2,062,661	-		ABIE53_001824	0.86	-1.3
2,062,661	-		ABIE53_001824	0.86	+1.8
2,062,661	-		ABIE53_001824	0.86	-3.3
2,062,661	-		ABIE53_001824	0.86	-1.0
2,062,703	+				-0.6
2,062,703	+				-0.1
2,062,703	+				+0.5
2,062,703	+				-0.1
2,062,703	+				+0.5
2,062,703	+				-1.0
2,062,703	+				+0.1
2,062,703	+				-0.7
2,062,703	+				+0.0
2,062,703	+				-0.4
2,062,703	+				+0.9
2,062,703	+				-1.0
2,062,703	+				-1.0
2,062,703	+				-1.6
2,062,703	+				-2.1
2,062,704	-				-1.6
2,062,704	-				+2.0
2,062,704	-				-1.0
2,062,704	-				+0.4
2,062,704	-				-0.9
2,062,704	-				+0.6
2,062,704	-				+1.0
2,062,704	-				+0.9
2,062,704	-				+0.3
2,062,704	-				+2.0
2,062,704	-				-0.6
2,062,704	-				+0.7
2,062,704	-				+0.3
2,062,704	-				+0.4
2,062,704	-				+0.6
2,062,704	-				+1.6
2,062,704	-				+0.2
2,062,704	-				+1.4
2,062,704	-				+0.9
2,062,792	+				-1.4
2,062,792	+				+3.4
2,062,792	+				+2.0
2,062,792	+				-0.9
2,062,793	-				+2.4
2,062,793	-				+1.4
2,062,793	-				-1.1
2,062,867	+				+0.4
2,062,867	+				-0.3
2,062,867	+				+2.4
2,062,867	+				-0.4
2,062,867	+				-0.3
2,062,868	-				+0.1
2,062,868	-				+1.1
2,062,868	-				+1.9
2,062,868	-				+0.9
2,062,868	-				+0.6
2,062,868	-				+1.4
2,062,941	+		ABIE53_001825	0.72	+0.4
2,062,941	+		ABIE53_001825	0.72	-0.4
2,062,941	+		ABIE53_001825	0.72	-0.1
2,062,941	+		ABIE53_001825	0.72	+1.9
2,062,942	-		ABIE53_001825	0.73	-0.1
2,062,942	-		ABIE53_001825	0.73	+0.4
2,062,942	-		ABIE53_001825	0.73	+1.4
2,062,942	-		ABIE53_001825	0.73	-0.4
2,062,942	-		ABIE53_001825	0.73	-0.6
2,063,013	+				+0.3
2,063,013	+				+0.1
2,063,016	+				+2.4
2,063,016	+				+1.9
2,063,016	+				-0.4
2,063,016	+				+0.4
2,063,049	+				+1.2
2,063,082	+				-1.6
2,063,082	+				+1.4
2,063,121	+				+0.4
2,063,121	+				+0.4
2,063,121	+				-0.1
2,063,121	+				+1.9
2,063,121	+				+0.7
2,063,203	+				+0.7
2,063,203	+				-0.1
2,063,203	+				-0.5
2,063,203	+				-1.4
2,063,203	+				+0.4