Strain Fitness in Paraburkholderia graminis OAS925 around ABIE53_001023

Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
1,123,002	+		ABIE53_001021	0.81	-0.6
1,123,002	+		ABIE53_001021	0.81	-0.6
1,123,003	-		ABIE53_001021	0.81	+3.0
1,123,025	+		ABIE53_001021	0.87	-0.8
1,123,025	+		ABIE53_001021	0.87	-2.1
1,123,025	+		ABIE53_001021	0.87	-2.5
1,123,026	-		ABIE53_001021	0.87	+0.2
1,123,026	-		ABIE53_001021	0.87	-1.4
1,123,026	-		ABIE53_001021	0.87	+0.1
1,123,028	+		ABIE53_001021	0.88	-1.2
1,123,028	+		ABIE53_001021	0.88	+2.4
1,123,028	+		ABIE53_001021	0.88	+0.2
1,123,028	+		ABIE53_001021	0.88	+0.4
1,123,028	+		ABIE53_001021	0.88	-1.9
1,123,028	+		ABIE53_001021	0.88	-0.2
1,123,028	+		ABIE53_001021	0.88	+0.4
1,123,028	+		ABIE53_001021	0.88	-1.2
1,123,029	-		ABIE53_001021	0.88	-0.1
1,123,029	-		ABIE53_001021	0.88	-0.8
1,123,029	-		ABIE53_001021	0.88	-0.6
1,123,029	-		ABIE53_001021	0.88	-1.5
1,123,029	-		ABIE53_001021	0.88	-0.1
1,123,060	+				+1.4
1,123,060	+				-0.1
1,123,060	+				+0.6
1,123,060	+				-0.2
1,123,060	+				-1.9
1,123,060	+				-0.2
1,123,061	-				-1.3
1,123,061	-				-0.5
1,123,073	-				-1.6
1,123,218	+				+0.1
1,123,218	+				-0.2
1,123,218	+				-0.6
1,123,218	+				-0.4
1,123,218	+				-0.6
1,123,218	+				-2.0
1,123,218	+				+1.8
1,123,219	-				-2.0
1,123,219	-				-0.6
1,123,219	-				-0.2
1,123,219	-				-0.2
1,123,219	-				+0.9
1,123,219	-				-0.2
1,123,219	-				-0.2
1,123,219	-				-0.9
1,123,284	+				-2.8
1,123,285	-				+0.4
1,123,286	+				+1.2
1,123,286	+				-0.4
1,123,286	+				-0.6
1,123,286	+				-0.4
1,123,287	-				+0.8
1,123,287	-				-0.4
1,123,287	-				-0.8
1,123,287	-				+0.4
1,123,287	-				+0.1
1,123,287	-				+0.4
1,123,287	-				+2.1
1,123,287	-				-3.3
1,123,345	+				+0.4
1,123,345	+				+1.1
1,123,346	-				+2.1
1,123,490	+				-0.2
1,123,490	+				-0.9
1,123,490	+				-2.8
1,123,490	+				+0.1
1,123,490	+				+0.4
1,123,490	+				-2.5
1,123,490	+				-0.8
1,123,490	+				-1.1
1,123,491	-				-1.6
1,123,491	-				+0.4
1,123,491	-				+0.2
1,123,491	-				-1.5
1,123,491	-				-1.3
1,123,491	-				-1.3
1,123,491	-				-0.8
1,123,491	-				+1.8
1,123,491	-				+0.8
1,123,491	-				+3.7
1,123,491	-				-1.6
1,123,491	-				-0.9
1,123,491	-				-1.7
1,123,491	-				-2.1
1,123,491	-				-1.4
1,123,491	-				+0.3
1,123,500	+				-0.8
1,123,500	+				-1.0
1,123,500	+				-1.8
1,123,500	+				-1.1
1,123,500	+				-0.6
1,123,500	+				+1.8
1,123,500	+				-0.9
1,123,501	-				-2.9
1,123,501	-				+0.8
1,123,501	-				+0.4
1,123,501	-				+0.2
1,123,501	-				+0.5
1,123,501	-				+2.0
1,123,516	+				-1.1
1,123,517	-				+0.2
1,123,517	-				-2.1
1,123,517	-				-0.6
1,123,517	-				-2.1
1,123,636	+		ABIE53_001022	0.45	-0.6
1,123,636	+		ABIE53_001022	0.45	-1.7
1,123,637	-		ABIE53_001022	0.45	-2.1
1,123,684	+		ABIE53_001022	0.59	+0.1
1,123,684	+		ABIE53_001022	0.59	-1.7
1,123,684	+		ABIE53_001022	0.59	+1.2
1,123,685	-		ABIE53_001022	0.59	-1.3
1,123,778	+		ABIE53_001022	0.87	+0.1
1,123,779	-		ABIE53_001022	0.87	-1.2
1,123,779	-		ABIE53_001022	0.87	-1.0
1,123,779	-		ABIE53_001022	0.87	+2.4
1,123,781	+		ABIE53_001022	0.88	-0.2
1,123,781	+		ABIE53_001022	0.88	-0.8
1,123,781	+		ABIE53_001022	0.88	-0.6
1,123,817	+				-2.6
1,123,817	+				+1.0
1,123,817	+				+0.1
1,123,817	+				-2.7
1,123,817	+				-1.5
1,123,817	+				+0.4
1,123,817	+				-0.6
1,123,817	+				+1.9
1,123,818	-				+0.1
1,123,818	-				+0.5
1,123,818	-				-0.9
1,123,818	-				-0.6
1,123,818	-				-0.4
1,123,818	-				+0.3
1,123,818	-				-0.9
1,123,818	-				+1.4
1,123,818	-				-1.7
1,123,818	-				+0.3
1,123,819	+				+1.9
1,123,819	+				+4.0
1,123,819	+				+0.4
1,123,819	+				-0.4
1,123,819	+				+1.1
1,123,819	+				-0.2
1,123,819	+				-1.8
1,123,820	-				-2.1
1,123,820	-				-1.4
1,123,820	-				-0.4
1,123,865	-				-0.0
1,123,941	-				-2.4
1,123,988	+				+1.3
1,123,988	+				+2.4
1,123,988	+				+0.0
1,123,988	+				+0.8
1,123,988	+				-1.3
1,123,988	+				+1.8
1,123,988	+				-0.6
1,123,988	+				+2.4
1,123,988	+				+0.4
1,123,988	+				+0.4
1,123,988	+				+2.0
1,123,988	+				+0.1
1,123,988	+				+0.4
1,123,988	+				-1.1
1,123,988	+				+1.2
1,123,989	-				-1.2
1,123,989	-				+1.4
1,123,989	-				+0.2
1,123,989	-				-1.9
1,123,989	-				-0.8
1,123,989	-				-0.3
1,123,989	-				-0.9
1,123,989	-				+0.6
1,123,989	-				-1.5
1,123,989	-				+0.9
1,124,100	+		ABIE53_001023	0.19	+0.2
1,124,100	+		ABIE53_001023	0.19	-0.3
1,124,100	+		ABIE53_001023	0.19	-0.7
1,124,100	+		ABIE53_001023	0.19	-1.6
1,124,100	+		ABIE53_001023	0.19	-0.9
1,124,100	+		ABIE53_001023	0.19	+0.1
1,124,108	+		ABIE53_001023	0.20	-1.3
1,124,108	+		ABIE53_001023	0.20	-1.7
1,124,109	-		ABIE53_001023	0.21	-0.4
1,124,109	-		ABIE53_001023	0.21	+0.4
1,124,115	+		ABIE53_001023	0.21	-1.9
1,124,115	+		ABIE53_001023	0.21	-0.6
1,124,115	+		ABIE53_001023	0.21	+0.4
1,124,115	+		ABIE53_001023	0.21	-0.1
1,124,115	+		ABIE53_001023	0.21	+1.4
1,124,116	-		ABIE53_001023	0.22	-0.4
1,124,116	-		ABIE53_001023	0.22	-1.1
1,124,116	-		ABIE53_001023	0.22	-2.0
1,124,116	-		ABIE53_001023	0.22	-1.7
1,124,141	+		ABIE53_001023	0.25	-1.3
1,124,141	+		ABIE53_001023	0.25	-0.0
1,124,141	+		ABIE53_001023	0.25	+2.4
1,124,141	+		ABIE53_001023	0.25	-0.3
1,124,142	-		ABIE53_001023	0.25	-1.5
1,124,142	-		ABIE53_001023	0.25	-1.1
1,124,143	+		ABIE53_001023	0.25	-1.2
1,124,143	+		ABIE53_001023	0.25	-0.4
1,124,143	+		ABIE53_001023	0.25	+0.8
1,124,143	+		ABIE53_001023	0.25	-1.0
1,124,143	+		ABIE53_001023	0.25	-2.6
1,124,143	+		ABIE53_001023	0.25	+0.8
1,124,144	-		ABIE53_001023	0.25	-2.2
1,124,144	-		ABIE53_001023	0.25	-2.6
1,124,144	-		ABIE53_001023	0.25	-1.0
1,124,154	+		ABIE53_001023	0.27	-0.2
1,124,154	+		ABIE53_001023	0.27	-1.8
1,124,154	+		ABIE53_001023	0.27	-0.6
1,124,154	+		ABIE53_001023	0.27	-0.1
1,124,154	+		ABIE53_001023	0.27	-0.4
1,124,154	+		ABIE53_001023	0.27	-1.9
1,124,154	+		ABIE53_001023	0.27	-0.8
1,124,155	-		ABIE53_001023	0.27	-1.6
1,124,155	-		ABIE53_001023	0.27	+1.6
1,124,155	-		ABIE53_001023	0.27	-1.1
1,124,155	-		ABIE53_001023	0.27	-0.2
1,124,155	-		ABIE53_001023	0.27	+2.4
1,124,158	+		ABIE53_001023	0.27	-0.5
1,124,158	+		ABIE53_001023	0.27	-0.4
1,124,158	+		ABIE53_001023	0.27	+0.8
1,124,159	-		ABIE53_001023	0.27	-0.0
1,124,159	-		ABIE53_001023	0.27	+0.8
1,124,159	-		ABIE53_001023	0.27	-0.4
1,124,285	+		ABIE53_001023	0.45	+0.8
1,124,285	+		ABIE53_001023	0.45	-2.1
1,124,285	+		ABIE53_001023	0.45	-0.5
1,124,285	+		ABIE53_001023	0.45	+0.1
1,124,285	+		ABIE53_001023	0.45	-2.0
1,124,607	-		ABIE53_001023	0.89	+0.7
1,124,607	-		ABIE53_001023	0.89	-1.1
1,124,705	-				+1.4
1,124,754	-				-2.5
1,124,919	-				-0.8
1,124,919	-				+1.6
1,124,919	-				+1.7
1,124,919	-				-1.5
1,124,919	-				-0.1
1,125,413	+		ABIE53_001024	0.21	-0.7
1,125,413	+		ABIE53_001024	0.21	-1.2
1,125,414	-		ABIE53_001024	0.21	-1.2
1,125,414	-		ABIE53_001024	0.21	+3.0
1,125,414	-		ABIE53_001024	0.21	-0.4
1,125,414	-		ABIE53_001024	0.21	+2.4
1,125,414	-		ABIE53_001024	0.21	-1.2
1,125,432	+		ABIE53_001024	0.23	+0.8
1,125,432	+		ABIE53_001024	0.23	-1.9
1,125,432	+		ABIE53_001024	0.23	+0.8
1,125,433	-		ABIE53_001024	0.23	+0.1
1,125,433	-		ABIE53_001024	0.23	+1.1
1,125,433	-		ABIE53_001024	0.23	+1.4
1,125,433	-		ABIE53_001024	0.23	+0.8
1,125,475	+		ABIE53_001024	0.27	-1.4
1,125,476	-		ABIE53_001024	0.27	-1.7
1,125,476	-		ABIE53_001024	0.27	-1.4
1,125,492	+		ABIE53_001024	0.29	-0.9
1,125,493	-		ABIE53_001024	0.29	-2.5
1,125,493	-		ABIE53_001024	0.29	-0.4
1,125,552	-		ABIE53_001024	0.35	-1.4
1,125,556	+		ABIE53_001024	0.35	-0.2
1,125,557	-		ABIE53_001024	0.35	-1.2
1,125,557	-		ABIE53_001024	0.35	-1.3
1,125,616	+		ABIE53_001024	0.42	-3.1
1,125,617	-		ABIE53_001024	0.42	-0.1
1,125,687	+		ABIE53_001024	0.49	-1.0
1,125,687	+		ABIE53_001024	0.49	+4.7
1,125,687	+		ABIE53_001024	0.49	-2.7
1,125,687	+		ABIE53_001024	0.49	-1.0
1,125,687	+		ABIE53_001024	0.49	-0.8
1,125,687	+		ABIE53_001024	0.49	-2.0
1,125,687	+		ABIE53_001024	0.49	-0.9
1,125,688	-		ABIE53_001024	0.49	-1.3
1,125,688	-		ABIE53_001024	0.49	+0.5
1,125,688	-		ABIE53_001024	0.49	-2.5
1,125,688	-		ABIE53_001024	0.49	-2.7
1,125,688	-		ABIE53_001024	0.49	-0.8
1,125,688	-		ABIE53_001024	0.49	-1.8
1,125,688	-		ABIE53_001024	0.49	-0.6
1,125,688	-		ABIE53_001024	0.49	+1.8
1,125,688	-		ABIE53_001024	0.49	-1.0
1,125,688	-		ABIE53_001024	0.49	+0.4
1,125,688	-		ABIE53_001024	0.49	-0.3
1,125,688	-		ABIE53_001024	0.49	-2.4
1,125,688	-		ABIE53_001024	0.49	-2.5
1,125,688	-		ABIE53_001024	0.49	-1.3
1,125,688	-		ABIE53_001024	0.49	+0.1
1,125,688	-		ABIE53_001024	0.49	+1.8
1,125,688	-		ABIE53_001024	0.49	-1.6