Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20510

Experiment: D-Glucose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS20505 and BPHYT_RS20510 are separated by 127 nucleotidesBPHYT_RS20510 and BPHYT_RS20515 are separated by 65 nucleotides BPHYT_RS20505: BPHYT_RS20505 - carboxymethylenebutenolidase, at 163,269 to 163,976 _RS20505 BPHYT_RS20510: BPHYT_RS20510 - oxidoreductase, at 164,104 to 164,850 _RS20510 BPHYT_RS20515: BPHYT_RS20515 - alpha/beta hydrolase, at 164,916 to 165,776 _RS20515 Position (kb) 164 165Strain fitness (log2 ratio) -2 -1 0 1 2at 163.251 kb on + strandat 163.706 kb on + strand, within BPHYT_RS20505at 163.974 kb on + strandat 164.106 kb on - strandat 164.490 kb on - strand, within BPHYT_RS20510at 165.067 kb on + strand, within BPHYT_RS20515at 165.128 kb on - strand, within BPHYT_RS20515at 165.322 kb on + strand, within BPHYT_RS20515at 165.712 kb on + strandat 165.832 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
remove
163,251 + -0.4
163,706 + BPHYT_RS20505 0.62 +1.1
163,974 + -0.5
164,106 - +1.4
164,490 - BPHYT_RS20510 0.52 -0.5
165,067 + BPHYT_RS20515 0.18 -2.7
165,128 - BPHYT_RS20515 0.25 +1.8
165,322 + BPHYT_RS20515 0.47 -0.3
165,712 + +1.0
165,832 + -0.1

Or see this region's nucleotide sequence