Experiment: D-Glucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20415 and BPHYT_RS20420 are separated by 147 nucleotides BPHYT_RS20420 and BPHYT_RS20425 are separated by 433 nucleotides BPHYT_RS20425 and BPHYT_RS20430 are separated by 252 nucleotides
BPHYT_RS20415: BPHYT_RS20415 - 5-dehydro-4-deoxyglucarate dehydratase, at 143,071 to 143,988
_RS20415
BPHYT_RS20420: BPHYT_RS20420 - DSBA oxidoreductase, at 144,136 to 145,644
_RS20420
BPHYT_RS20425: BPHYT_RS20425 - hypothetical protein, at 146,078 to 146,386
_RS20425
BPHYT_RS20430: BPHYT_RS20430 - 3-dehydroquinate dehydratase, at 146,639 to 147,094
_RS20430
Position (kb) 144
145
146 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 143.170 kb on + strand, within BPHYT_RS20415 at 143.170 kb on + strand, within BPHYT_RS20415 at 143.171 kb on - strand, within BPHYT_RS20415 at 143.497 kb on + strand, within BPHYT_RS20415 at 143.497 kb on + strand, within BPHYT_RS20415 at 143.498 kb on - strand, within BPHYT_RS20415 at 143.671 kb on + strand, within BPHYT_RS20415 at 143.685 kb on + strand, within BPHYT_RS20415 at 143.706 kb on - strand, within BPHYT_RS20415 at 143.707 kb on + strand, within BPHYT_RS20415 at 143.708 kb on - strand, within BPHYT_RS20415 at 143.851 kb on + strand, within BPHYT_RS20415 at 144.223 kb on - strand at 144.223 kb on - strand at 144.226 kb on + strand at 144.227 kb on - strand at 144.227 kb on - strand at 144.721 kb on - strand, within BPHYT_RS20420 at 145.142 kb on + strand, within BPHYT_RS20420 at 145.250 kb on + strand, within BPHYT_RS20420 at 145.470 kb on - strand, within BPHYT_RS20420 at 145.520 kb on + strand at 145.521 kb on - strand at 145.541 kb on + strand at 145.541 kb on + strand at 145.541 kb on + strand at 145.542 kb on - strand at 145.544 kb on + strand at 145.798 kb on + strand at 145.876 kb on + strand at 145.899 kb on + strand at 145.904 kb on - strand at 146.124 kb on + strand, within BPHYT_RS20425 at 146.304 kb on - strand, within BPHYT_RS20425 at 146.307 kb on - strand, within BPHYT_RS20425 at 146.466 kb on + strand at 146.466 kb on + strand at 146.467 kb on - strand at 146.467 kb on - strand at 146.509 kb on - strand at 146.596 kb on + strand at 146.596 kb on + strand at 146.597 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose (C) remove 143,170 + BPHYT_RS20415 0.11 +0.5 143,170 + BPHYT_RS20415 0.11 -0.5 143,171 - BPHYT_RS20415 0.11 -2.0 143,497 + BPHYT_RS20415 0.46 +0.1 143,497 + BPHYT_RS20415 0.46 -0.7 143,498 - BPHYT_RS20415 0.47 -2.1 143,671 + BPHYT_RS20415 0.65 -0.5 143,685 + BPHYT_RS20415 0.67 -2.1 143,706 - BPHYT_RS20415 0.69 +1.3 143,707 + BPHYT_RS20415 0.69 -0.5 143,708 - BPHYT_RS20415 0.69 -1.7 143,851 + BPHYT_RS20415 0.85 -2.5 144,223 - +0.0 144,223 - +0.9 144,226 + +0.3 144,227 - +0.0 144,227 - -0.5 144,721 - BPHYT_RS20420 0.39 +0.1 145,142 + BPHYT_RS20420 0.67 +0.5 145,250 + BPHYT_RS20420 0.74 +0.4 145,470 - BPHYT_RS20420 0.88 -0.0 145,520 + +0.7 145,521 - +3.0 145,541 + +2.5 145,541 + +0.1 145,541 + +0.1 145,542 - -1.8 145,544 + +0.3 145,798 + +0.2 145,876 + +0.1 145,899 + -1.5 145,904 - +0.9 146,124 + BPHYT_RS20425 0.15 +1.1 146,304 - BPHYT_RS20425 0.73 -1.0 146,307 - BPHYT_RS20425 0.74 -1.7 146,466 + +0.3 146,466 + -2.0 146,467 - -0.0 146,467 - -0.1 146,509 - -3.7 146,596 + -0.2 146,596 + -0.1 146,597 - -0.9
Or see this region's nucleotide sequence