Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS04130

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS04125 and BPHYT_RS04130 are separated by 759 nucleotidesBPHYT_RS04130 and BPHYT_RS04135 are separated by 310 nucleotides BPHYT_RS04125: BPHYT_RS04125 - hypothetical protein, at 943,110 to 944,270 _RS04125 BPHYT_RS04130: BPHYT_RS04130 - alpha/beta hydrolase, at 945,030 to 946,925 _RS04130 BPHYT_RS04135: BPHYT_RS04135 - glycosyl transferase family 1, at 947,236 to 948,408 _RS04135 Position (kb) 945 946 947Strain fitness (log2 ratio) -3 -2 -1 0 1at 944.206 kb on - strandat 944.344 kb on - strandat 945.018 kb on + strandat 945.024 kb on + strandat 945.568 kb on + strand, within BPHYT_RS04130at 945.710 kb on - strand, within BPHYT_RS04130at 945.784 kb on + strand, within BPHYT_RS04130at 945.784 kb on + strand, within BPHYT_RS04130at 945.957 kb on - strand, within BPHYT_RS04130at 946.206 kb on + strand, within BPHYT_RS04130at 946.232 kb on + strand, within BPHYT_RS04130at 946.587 kb on - strand, within BPHYT_RS04130at 946.661 kb on + strand, within BPHYT_RS04130at 946.666 kb on + strand, within BPHYT_RS04130at 946.667 kb on - strand, within BPHYT_RS04130at 946.822 kb on - strandat 947.049 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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944,206 - -0.0
944,344 - -1.4
945,018 + +0.4
945,024 + -0.2
945,568 + BPHYT_RS04130 0.28 -2.0
945,710 - BPHYT_RS04130 0.36 -2.8
945,784 + BPHYT_RS04130 0.40 -0.9
945,784 + BPHYT_RS04130 0.40 -2.5
945,957 - BPHYT_RS04130 0.49 +1.4
946,206 + BPHYT_RS04130 0.62 -0.4
946,232 + BPHYT_RS04130 0.63 -0.2
946,587 - BPHYT_RS04130 0.82 -0.4
946,661 + BPHYT_RS04130 0.86 -1.0
946,666 + BPHYT_RS04130 0.86 +0.0
946,667 - BPHYT_RS04130 0.86 +0.9
946,822 - -0.1
947,049 - -0.3

Or see this region's nucleotide sequence