Experiment: nitrogen source nitrite 5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20350 and ABZR87_RS20355 are separated by 55 nucleotides ABZR87_RS20355 and ABZR87_RS20360 overlap by 4 nucleotides ABZR87_RS20360 and ABZR87_RS20365 are separated by 25 nucleotides
ABZR87_RS20350: ABZR87_RS20350 - LysR substrate-binding domain-containing protein, at 955,014 to 955,910
_RS20350
ABZR87_RS20355: ABZR87_RS20355 - hypothetical protein, at 955,966 to 956,331
_RS20355
ABZR87_RS20360: ABZR87_RS20360 - ABC transporter substrate-binding protein, at 956,328 to 957,269
_RS20360
ABZR87_RS20365: ABZR87_RS20365 - cytochrome c, at 957,295 to 958,461
_RS20365
Position (kb) 956
957
958 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 955.596 kb on + strand, within ABZR87_RS20350 at 955.596 kb on + strand, within ABZR87_RS20350 at 955.596 kb on + strand, within ABZR87_RS20350 at 955.597 kb on - strand, within ABZR87_RS20350 at 955.597 kb on - strand, within ABZR87_RS20350 at 955.597 kb on - strand, within ABZR87_RS20350 at 955.597 kb on - strand, within ABZR87_RS20350 at 955.618 kb on - strand, within ABZR87_RS20350 at 955.618 kb on - strand, within ABZR87_RS20350 at 955.681 kb on - strand, within ABZR87_RS20350 at 955.782 kb on + strand, within ABZR87_RS20350 at 955.783 kb on - strand, within ABZR87_RS20350 at 956.554 kb on + strand, within ABZR87_RS20360 at 956.554 kb on + strand, within ABZR87_RS20360 at 956.554 kb on + strand, within ABZR87_RS20360 at 956.554 kb on + strand, within ABZR87_RS20360 at 956.555 kb on - strand, within ABZR87_RS20360 at 956.644 kb on + strand, within ABZR87_RS20360 at 956.644 kb on + strand, within ABZR87_RS20360 at 956.645 kb on - strand, within ABZR87_RS20360 at 956.645 kb on - strand, within ABZR87_RS20360 at 956.720 kb on - strand, within ABZR87_RS20360 at 956.877 kb on - strand, within ABZR87_RS20360 at 957.109 kb on + strand, within ABZR87_RS20360 at 957.110 kb on - strand, within ABZR87_RS20360 at 957.110 kb on - strand, within ABZR87_RS20360 at 957.320 kb on + strand at 957.320 kb on + strand at 957.320 kb on + strand at 957.321 kb on - strand at 957.321 kb on - strand at 958.052 kb on + strand, within ABZR87_RS20365 at 958.053 kb on - strand, within ABZR87_RS20365 at 958.053 kb on - strand, within ABZR87_RS20365 at 958.053 kb on - strand, within ABZR87_RS20365
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 5mM remove 955,596 + ABZR87_RS20350 0.65 -0.4 955,596 + ABZR87_RS20350 0.65 +0.4 955,596 + ABZR87_RS20350 0.65 -1.7 955,597 - ABZR87_RS20350 0.65 +0.6 955,597 - ABZR87_RS20350 0.65 +0.0 955,597 - ABZR87_RS20350 0.65 +0.2 955,597 - ABZR87_RS20350 0.65 -0.6 955,618 - ABZR87_RS20350 0.67 -0.2 955,618 - ABZR87_RS20350 0.67 +0.4 955,681 - ABZR87_RS20350 0.74 -0.1 955,782 + ABZR87_RS20350 0.86 +0.8 955,783 - ABZR87_RS20350 0.86 +0.3 956,554 + ABZR87_RS20360 0.24 -2.2 956,554 + ABZR87_RS20360 0.24 -0.4 956,554 + ABZR87_RS20360 0.24 +0.9 956,554 + ABZR87_RS20360 0.24 +0.4 956,555 - ABZR87_RS20360 0.24 -0.8 956,644 + ABZR87_RS20360 0.34 +0.0 956,644 + ABZR87_RS20360 0.34 +0.7 956,645 - ABZR87_RS20360 0.34 -0.7 956,645 - ABZR87_RS20360 0.34 +0.0 956,720 - ABZR87_RS20360 0.42 +0.6 956,877 - ABZR87_RS20360 0.58 -0.1 957,109 + ABZR87_RS20360 0.83 -0.9 957,110 - ABZR87_RS20360 0.83 +1.3 957,110 - ABZR87_RS20360 0.83 +0.3 957,320 + +1.0 957,320 + -0.3 957,320 + +0.2 957,321 - +0.6 957,321 - -0.1 958,052 + ABZR87_RS20365 0.65 -0.6 958,053 - ABZR87_RS20365 0.65 -0.4 958,053 - ABZR87_RS20365 0.65 -2.8 958,053 - ABZR87_RS20365 0.65 -0.1
Or see this region's nucleotide sequence