Experiment: nitrogen source nitrite 5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS18180 and ABZR87_RS18185 overlap by 7 nucleotides ABZR87_RS18185 and ABZR87_RS18190 overlap by 4 nucleotides ABZR87_RS18190 and ABZR87_RS18195 are separated by 374 nucleotides
ABZR87_RS18180: ABZR87_RS18180 - hypothetical protein, at 441,108 to 441,668
_RS18180
ABZR87_RS18185: ABZR87_RS18185 - hypothetical protein, at 441,662 to 442,174
_RS18185
ABZR87_RS18190: ABZR87_RS18190 - Ivy family c-type lysozyme inhibitor, at 442,171 to 442,662
_RS18190
ABZR87_RS18195: ABZR87_RS18195 - hypothetical protein, at 443,037 to 452,582
_RS18195
Position (kb) 442
443 Strain fitness (log2 ratio) -2
-1
0
1
2 at 441.218 kb on + strand, within ABZR87_RS18180 at 441.219 kb on - strand, within ABZR87_RS18180 at 441.382 kb on - strand, within ABZR87_RS18180 at 441.607 kb on - strand, within ABZR87_RS18180 at 441.666 kb on + strand at 441.667 kb on - strand at 441.667 kb on - strand at 441.774 kb on + strand, within ABZR87_RS18185 at 441.774 kb on + strand, within ABZR87_RS18185 at 441.849 kb on + strand, within ABZR87_RS18185 at 441.849 kb on + strand, within ABZR87_RS18185 at 441.849 kb on + strand, within ABZR87_RS18185 at 441.849 kb on + strand, within ABZR87_RS18185 at 441.849 kb on + strand, within ABZR87_RS18185 at 441.850 kb on - strand, within ABZR87_RS18185 at 441.850 kb on - strand, within ABZR87_RS18185 at 441.850 kb on - strand, within ABZR87_RS18185 at 441.850 kb on - strand, within ABZR87_RS18185 at 441.850 kb on - strand, within ABZR87_RS18185 at 441.850 kb on - strand, within ABZR87_RS18185 at 441.850 kb on - strand, within ABZR87_RS18185 at 441.850 kb on - strand, within ABZR87_RS18185 at 441.868 kb on - strand, within ABZR87_RS18185 at 441.915 kb on + strand, within ABZR87_RS18185 at 441.915 kb on + strand, within ABZR87_RS18185 at 441.970 kb on - strand, within ABZR87_RS18185 at 441.991 kb on + strand, within ABZR87_RS18185 at 441.991 kb on + strand, within ABZR87_RS18185 at 441.991 kb on + strand, within ABZR87_RS18185 at 441.992 kb on - strand, within ABZR87_RS18185 at 441.992 kb on - strand, within ABZR87_RS18185 at 442.057 kb on - strand, within ABZR87_RS18185 at 442.074 kb on + strand, within ABZR87_RS18185 at 442.454 kb on + strand, within ABZR87_RS18190 at 442.574 kb on + strand, within ABZR87_RS18190 at 442.644 kb on - strand at 442.644 kb on - strand at 442.663 kb on - strand at 442.717 kb on - strand at 442.742 kb on + strand at 442.743 kb on - strand at 442.743 kb on - strand at 442.743 kb on - strand at 442.841 kb on + strand at 442.842 kb on - strand at 442.853 kb on + strand at 442.853 kb on + strand at 442.951 kb on - strand at 443.175 kb on - strand at 443.351 kb on - strand at 443.360 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 5mM remove 441,218 + ABZR87_RS18180 0.20 -0.2 441,219 - ABZR87_RS18180 0.20 -0.7 441,382 - ABZR87_RS18180 0.49 +0.0 441,607 - ABZR87_RS18180 0.89 +0.6 441,666 + +0.1 441,667 - -0.3 441,667 - -0.0 441,774 + ABZR87_RS18185 0.22 +1.2 441,774 + ABZR87_RS18185 0.22 -0.0 441,849 + ABZR87_RS18185 0.36 -2.6 441,849 + ABZR87_RS18185 0.36 +0.3 441,849 + ABZR87_RS18185 0.36 +1.0 441,849 + ABZR87_RS18185 0.36 +1.6 441,849 + ABZR87_RS18185 0.36 +1.0 441,850 - ABZR87_RS18185 0.37 +0.6 441,850 - ABZR87_RS18185 0.37 -0.4 441,850 - ABZR87_RS18185 0.37 +0.4 441,850 - ABZR87_RS18185 0.37 -0.7 441,850 - ABZR87_RS18185 0.37 -0.5 441,850 - ABZR87_RS18185 0.37 +0.4 441,850 - ABZR87_RS18185 0.37 -0.2 441,850 - ABZR87_RS18185 0.37 +0.4 441,868 - ABZR87_RS18185 0.40 +0.4 441,915 + ABZR87_RS18185 0.49 +1.0 441,915 + ABZR87_RS18185 0.49 -0.0 441,970 - ABZR87_RS18185 0.60 -0.1 441,991 + ABZR87_RS18185 0.64 -0.0 441,991 + ABZR87_RS18185 0.64 -0.0 441,991 + ABZR87_RS18185 0.64 -0.2 441,992 - ABZR87_RS18185 0.64 -0.4 441,992 - ABZR87_RS18185 0.64 +1.2 442,057 - ABZR87_RS18185 0.77 +2.5 442,074 + ABZR87_RS18185 0.80 -0.8 442,454 + ABZR87_RS18190 0.58 -1.0 442,574 + ABZR87_RS18190 0.82 -0.9 442,644 - -0.6 442,644 - -0.0 442,663 - +1.0 442,717 - -1.6 442,742 + -1.6 442,743 - +0.7 442,743 - +0.5 442,743 - -0.3 442,841 + -0.4 442,842 - +0.7 442,853 + +0.7 442,853 + +0.1 442,951 - +0.2 443,175 - -0.6 443,351 - -1.6 443,360 - +0.6
Or see this region's nucleotide sequence