Experiment: nitrogen source nitrite 5mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS08735 and ABZR87_RS08740 are separated by 495 nucleotides ABZR87_RS08740 and ABZR87_RS08745 are separated by 281 nucleotides
ABZR87_RS08735: ABZR87_RS08735 - IS256 family transposase, at 1,856,709 to 1,857,545
_RS08735
ABZR87_RS08740: ABZR87_RS08740 - hypothetical protein, at 1,858,041 to 1,858,814
_RS08740
ABZR87_RS08745: ABZR87_RS08745 - phosphomannomutase/phosphoglucomutase, at 1,859,096 to 1,860,484
_RS08745
Position (kb)
1858
1859 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1857.084 kb on + strand, within ABZR87_RS08735 at 1857.085 kb on - strand, within ABZR87_RS08735 at 1857.085 kb on - strand, within ABZR87_RS08735 at 1857.085 kb on - strand, within ABZR87_RS08735 at 1857.085 kb on - strand, within ABZR87_RS08735 at 1857.135 kb on + strand, within ABZR87_RS08735 at 1857.135 kb on + strand, within ABZR87_RS08735 at 1857.136 kb on - strand, within ABZR87_RS08735 at 1857.136 kb on - strand, within ABZR87_RS08735 at 1857.136 kb on - strand, within ABZR87_RS08735 at 1857.136 kb on - strand, within ABZR87_RS08735 at 1857.183 kb on + strand, within ABZR87_RS08735 at 1857.183 kb on + strand, within ABZR87_RS08735 at 1857.183 kb on + strand, within ABZR87_RS08735 at 1857.184 kb on - strand, within ABZR87_RS08735 at 1857.184 kb on - strand, within ABZR87_RS08735 at 1857.271 kb on + strand, within ABZR87_RS08735 at 1857.271 kb on + strand, within ABZR87_RS08735 at 1857.271 kb on + strand, within ABZR87_RS08735 at 1857.272 kb on - strand, within ABZR87_RS08735 at 1857.283 kb on + strand, within ABZR87_RS08735 at 1857.283 kb on + strand, within ABZR87_RS08735 at 1857.283 kb on + strand, within ABZR87_RS08735 at 1857.373 kb on + strand, within ABZR87_RS08735 at 1857.373 kb on + strand, within ABZR87_RS08735 at 1857.373 kb on + strand, within ABZR87_RS08735 at 1857.374 kb on - strand, within ABZR87_RS08735 at 1857.449 kb on + strand, within ABZR87_RS08735 at 1857.449 kb on + strand, within ABZR87_RS08735 at 1857.450 kb on - strand, within ABZR87_RS08735 at 1857.450 kb on - strand, within ABZR87_RS08735 at 1857.547 kb on + strand at 1857.547 kb on + strand at 1857.548 kb on - strand at 1857.548 kb on - strand at 1857.599 kb on + strand at 1857.599 kb on + strand at 1857.599 kb on + strand at 1857.599 kb on + strand at 1857.600 kb on - strand at 1857.600 kb on - strand at 1857.600 kb on - strand at 1857.600 kb on - strand at 1857.600 kb on - strand at 1857.600 kb on - strand at 1857.600 kb on - strand at 1857.600 kb on - strand at 1857.658 kb on + strand at 1857.690 kb on + strand at 1857.690 kb on + strand at 1857.690 kb on + strand at 1857.690 kb on + strand at 1857.691 kb on - strand at 1857.691 kb on - strand at 1857.691 kb on - strand at 1857.691 kb on - strand at 1857.691 kb on - strand at 1857.691 kb on - strand at 1857.691 kb on - strand at 1857.691 kb on - strand at 1857.691 kb on - strand at 1857.751 kb on + strand at 1857.752 kb on - strand at 1857.773 kb on + strand at 1857.773 kb on + strand at 1857.773 kb on + strand at 1857.774 kb on - strand at 1857.774 kb on - strand at 1857.774 kb on - strand at 1857.792 kb on + strand at 1857.792 kb on + strand at 1857.814 kb on + strand at 1857.814 kb on + strand at 1857.814 kb on + strand at 1857.814 kb on + strand at 1857.815 kb on - strand at 1857.815 kb on - strand at 1857.820 kb on + strand at 1857.821 kb on - strand at 1857.853 kb on + strand at 1857.853 kb on + strand at 1857.854 kb on - strand at 1857.892 kb on + strand at 1857.892 kb on + strand at 1857.892 kb on + strand at 1857.893 kb on - strand at 1857.893 kb on - strand at 1857.896 kb on + strand at 1857.896 kb on + strand at 1857.952 kb on + strand at 1857.953 kb on - strand at 1857.989 kb on + strand at 1857.999 kb on + strand at 1858.008 kb on + strand at 1858.072 kb on - strand at 1858.101 kb on + strand at 1858.101 kb on + strand at 1858.101 kb on + strand at 1858.101 kb on + strand at 1858.104 kb on + strand at 1858.104 kb on + strand at 1858.104 kb on + strand at 1858.104 kb on + strand at 1858.104 kb on + strand at 1858.105 kb on - strand at 1858.127 kb on + strand, within ABZR87_RS08740 at 1858.127 kb on + strand, within ABZR87_RS08740 at 1858.162 kb on + strand, within ABZR87_RS08740 at 1858.163 kb on - strand, within ABZR87_RS08740 at 1858.163 kb on - strand, within ABZR87_RS08740 at 1858.163 kb on - strand, within ABZR87_RS08740 at 1858.189 kb on + strand, within ABZR87_RS08740 at 1858.190 kb on - strand, within ABZR87_RS08740 at 1858.226 kb on + strand, within ABZR87_RS08740 at 1858.227 kb on - strand, within ABZR87_RS08740 at 1858.227 kb on - strand, within ABZR87_RS08740 at 1858.227 kb on - strand, within ABZR87_RS08740 at 1858.277 kb on + strand, within ABZR87_RS08740 at 1858.277 kb on + strand, within ABZR87_RS08740 at 1858.277 kb on + strand, within ABZR87_RS08740 at 1858.277 kb on + strand, within ABZR87_RS08740 at 1858.277 kb on + strand, within ABZR87_RS08740 at 1858.277 kb on + strand, within ABZR87_RS08740 at 1858.277 kb on + strand, within ABZR87_RS08740 at 1858.277 kb on + strand, within ABZR87_RS08740 at 1858.277 kb on + strand, within ABZR87_RS08740 at 1858.278 kb on - strand, within ABZR87_RS08740 at 1858.278 kb on - strand, within ABZR87_RS08740 at 1858.278 kb on - strand, within ABZR87_RS08740 at 1858.278 kb on - strand, within ABZR87_RS08740 at 1858.278 kb on - strand, within ABZR87_RS08740 at 1858.282 kb on - strand, within ABZR87_RS08740 at 1858.360 kb on + strand, within ABZR87_RS08740 at 1858.386 kb on + strand, within ABZR87_RS08740 at 1858.386 kb on + strand, within ABZR87_RS08740 at 1858.387 kb on - strand, within ABZR87_RS08740 at 1858.387 kb on - strand, within ABZR87_RS08740 at 1858.387 kb on - strand, within ABZR87_RS08740 at 1858.428 kb on + strand, within ABZR87_RS08740 at 1858.428 kb on + strand, within ABZR87_RS08740 at 1858.428 kb on + strand, within ABZR87_RS08740 at 1858.429 kb on - strand, within ABZR87_RS08740 at 1858.429 kb on - strand, within ABZR87_RS08740 at 1858.429 kb on - strand, within ABZR87_RS08740 at 1858.435 kb on + strand, within ABZR87_RS08740 at 1858.436 kb on - strand, within ABZR87_RS08740 at 1858.503 kb on - strand, within ABZR87_RS08740 at 1858.503 kb on - strand, within ABZR87_RS08740 at 1858.503 kb on - strand, within ABZR87_RS08740 at 1858.507 kb on + strand, within ABZR87_RS08740 at 1858.526 kb on + strand, within ABZR87_RS08740 at 1858.526 kb on + strand, within ABZR87_RS08740 at 1858.530 kb on + strand, within ABZR87_RS08740 at 1858.530 kb on + strand, within ABZR87_RS08740 at 1858.530 kb on + strand, within ABZR87_RS08740 at 1858.530 kb on + strand, within ABZR87_RS08740 at 1858.530 kb on + strand, within ABZR87_RS08740 at 1858.531 kb on - strand, within ABZR87_RS08740 at 1858.531 kb on - strand, within ABZR87_RS08740 at 1858.531 kb on - strand, within ABZR87_RS08740 at 1858.612 kb on - strand, within ABZR87_RS08740 at 1858.656 kb on - strand, within ABZR87_RS08740 at 1858.656 kb on - strand, within ABZR87_RS08740 at 1858.656 kb on - strand, within ABZR87_RS08740 at 1858.656 kb on - strand, within ABZR87_RS08740 at 1858.658 kb on - strand, within ABZR87_RS08740 at 1858.658 kb on - strand, within ABZR87_RS08740 at 1858.710 kb on - strand, within ABZR87_RS08740 at 1858.818 kb on + strand at 1858.818 kb on + strand at 1858.818 kb on + strand at 1858.818 kb on + strand at 1858.819 kb on - strand at 1858.845 kb on + strand at 1858.846 kb on - strand at 1858.865 kb on + strand at 1858.911 kb on + strand at 1858.911 kb on + strand at 1858.912 kb on - strand at 1858.921 kb on + strand at 1858.921 kb on + strand at 1858.921 kb on + strand at 1858.922 kb on - strand at 1858.922 kb on - strand at 1858.937 kb on + strand at 1858.937 kb on + strand at 1858.937 kb on + strand at 1858.937 kb on + strand at 1858.938 kb on - strand at 1858.938 kb on - strand at 1858.938 kb on - strand at 1858.939 kb on + strand at 1858.939 kb on + strand at 1858.939 kb on + strand at 1858.939 kb on + strand at 1858.939 kb on + strand at 1858.939 kb on + strand at 1858.940 kb on - strand at 1858.940 kb on - strand at 1858.940 kb on - strand at 1858.940 kb on - strand at 1858.940 kb on - strand at 1858.940 kb on - strand at 1858.940 kb on - strand at 1858.940 kb on - strand at 1858.940 kb on - strand at 1858.941 kb on - strand at 1858.983 kb on + strand at 1858.983 kb on + strand at 1858.983 kb on + strand at 1858.983 kb on + strand at 1858.983 kb on + strand at 1858.983 kb on + strand at 1858.983 kb on + strand at 1858.984 kb on - strand at 1859.057 kb on + strand at 1859.058 kb on - strand at 1859.058 kb on - strand at 1859.086 kb on + strand at 1859.086 kb on + strand at 1859.086 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction nitrogen source nitrite 5mM remove 1,857,084 + ABZR87_RS08735 0.45 -0.2 1,857,085 - ABZR87_RS08735 0.45 +1.0 1,857,085 - ABZR87_RS08735 0.45 +1.6 1,857,085 - ABZR87_RS08735 0.45 +0.0 1,857,085 - ABZR87_RS08735 0.45 -1.6 1,857,135 + ABZR87_RS08735 0.51 -0.2 1,857,135 + ABZR87_RS08735 0.51 +0.7 1,857,136 - ABZR87_RS08735 0.51 +0.8 1,857,136 - ABZR87_RS08735 0.51 +0.0 1,857,136 - ABZR87_RS08735 0.51 -0.2 1,857,136 - ABZR87_RS08735 0.51 +0.5 1,857,183 + ABZR87_RS08735 0.57 -1.2 1,857,183 + ABZR87_RS08735 0.57 -0.7 1,857,183 + ABZR87_RS08735 0.57 +0.9 1,857,184 - ABZR87_RS08735 0.57 +0.9 1,857,184 - ABZR87_RS08735 0.57 +0.9 1,857,271 + ABZR87_RS08735 0.67 -0.5 1,857,271 + ABZR87_RS08735 0.67 -1.0 1,857,271 + ABZR87_RS08735 0.67 +1.8 1,857,272 - ABZR87_RS08735 0.67 -1.6 1,857,283 + ABZR87_RS08735 0.69 +0.4 1,857,283 + ABZR87_RS08735 0.69 -0.8 1,857,283 + ABZR87_RS08735 0.69 -0.5 1,857,373 + ABZR87_RS08735 0.79 -0.8 1,857,373 + ABZR87_RS08735 0.79 +0.5 1,857,373 + ABZR87_RS08735 0.79 -1.1 1,857,374 - ABZR87_RS08735 0.79 +0.7 1,857,449 + ABZR87_RS08735 0.88 +0.2 1,857,449 + ABZR87_RS08735 0.88 -0.5 1,857,450 - ABZR87_RS08735 0.89 -0.8 1,857,450 - ABZR87_RS08735 0.89 +0.2 1,857,547 + +1.0 1,857,547 + +0.3 1,857,548 - -0.3 1,857,548 - -0.8 1,857,599 + +0.9 1,857,599 + +1.1 1,857,599 + -0.8 1,857,599 + +0.2 1,857,600 - +0.2 1,857,600 - +0.1 1,857,600 - -0.2 1,857,600 - -0.1 1,857,600 - -0.8 1,857,600 - +0.1 1,857,600 - -0.7 1,857,600 - -0.6 1,857,658 + -0.5 1,857,690 + -0.1 1,857,690 + +0.6 1,857,690 + -0.4 1,857,690 + -0.2 1,857,691 - +0.4 1,857,691 - -0.6 1,857,691 - +1.1 1,857,691 - +0.9 1,857,691 - +0.3 1,857,691 - -0.8 1,857,691 - +0.6 1,857,691 - -0.1 1,857,691 - +0.2 1,857,751 + +0.5 1,857,752 - -1.4 1,857,773 + -0.1 1,857,773 + +0.1 1,857,773 + +0.8 1,857,774 - +2.0 1,857,774 - -1.1 1,857,774 - +0.3 1,857,792 + -0.3 1,857,792 + +0.4 1,857,814 + -0.1 1,857,814 + +0.1 1,857,814 + +0.2 1,857,814 + -1.7 1,857,815 - +2.1 1,857,815 - +0.0 1,857,820 + +0.2 1,857,821 - -1.3 1,857,853 + -0.2 1,857,853 + -0.3 1,857,854 - -0.0 1,857,892 + +2.2 1,857,892 + +0.7 1,857,892 + -0.0 1,857,893 - -0.2 1,857,893 - +0.7 1,857,896 + -0.3 1,857,896 + +0.5 1,857,952 + +1.3 1,857,953 - -0.1 1,857,989 + +0.5 1,857,999 + -0.0 1,858,008 + +0.0 1,858,072 - -1.6 1,858,101 + -1.4 1,858,101 + -0.8 1,858,101 + -2.9 1,858,101 + -1.2 1,858,104 + -0.9 1,858,104 + -0.2 1,858,104 + -1.3 1,858,104 + -3.7 1,858,104 + -1.6 1,858,105 - -2.1 1,858,127 + ABZR87_RS08740 0.11 -1.1 1,858,127 + ABZR87_RS08740 0.11 -1.2 1,858,162 + ABZR87_RS08740 0.16 -2.2 1,858,163 - ABZR87_RS08740 0.16 -2.1 1,858,163 - ABZR87_RS08740 0.16 +0.5 1,858,163 - ABZR87_RS08740 0.16 -0.5 1,858,189 + ABZR87_RS08740 0.19 -1.6 1,858,190 - ABZR87_RS08740 0.19 -3.7 1,858,226 + ABZR87_RS08740 0.24 -0.0 1,858,227 - ABZR87_RS08740 0.24 -1.6 1,858,227 - ABZR87_RS08740 0.24 -2.5 1,858,227 - ABZR87_RS08740 0.24 -1.3 1,858,277 + ABZR87_RS08740 0.30 -0.7 1,858,277 + ABZR87_RS08740 0.30 -1.8 1,858,277 + ABZR87_RS08740 0.30 -1.1 1,858,277 + ABZR87_RS08740 0.30 -0.9 1,858,277 + ABZR87_RS08740 0.30 -0.8 1,858,277 + ABZR87_RS08740 0.30 -1.0 1,858,277 + ABZR87_RS08740 0.30 -1.4 1,858,277 + ABZR87_RS08740 0.30 -1.4 1,858,277 + ABZR87_RS08740 0.30 -1.9 1,858,278 - ABZR87_RS08740 0.31 -1.1 1,858,278 - ABZR87_RS08740 0.31 +0.2 1,858,278 - ABZR87_RS08740 0.31 -2.1 1,858,278 - ABZR87_RS08740 0.31 -0.4 1,858,278 - ABZR87_RS08740 0.31 -1.5 1,858,282 - ABZR87_RS08740 0.31 -1.0 1,858,360 + ABZR87_RS08740 0.41 -3.5 1,858,386 + ABZR87_RS08740 0.45 -0.9 1,858,386 + ABZR87_RS08740 0.45 -1.3 1,858,387 - ABZR87_RS08740 0.45 -1.6 1,858,387 - ABZR87_RS08740 0.45 -0.2 1,858,387 - ABZR87_RS08740 0.45 -1.1 1,858,428 + ABZR87_RS08740 0.50 -3.6 1,858,428 + ABZR87_RS08740 0.50 -1.7 1,858,428 + ABZR87_RS08740 0.50 -2.4 1,858,429 - ABZR87_RS08740 0.50 -0.3 1,858,429 - ABZR87_RS08740 0.50 -1.0 1,858,429 - ABZR87_RS08740 0.50 -2.9 1,858,435 + ABZR87_RS08740 0.51 -1.0 1,858,436 - ABZR87_RS08740 0.51 -2.0 1,858,503 - ABZR87_RS08740 0.60 -1.2 1,858,503 - ABZR87_RS08740 0.60 -0.7 1,858,503 - ABZR87_RS08740 0.60 -2.4 1,858,507 + ABZR87_RS08740 0.60 -1.1 1,858,526 + ABZR87_RS08740 0.63 -2.8 1,858,526 + ABZR87_RS08740 0.63 -1.2 1,858,530 + ABZR87_RS08740 0.63 -1.8 1,858,530 + ABZR87_RS08740 0.63 -1.5 1,858,530 + ABZR87_RS08740 0.63 -1.6 1,858,530 + ABZR87_RS08740 0.63 -1.7 1,858,530 + ABZR87_RS08740 0.63 -0.4 1,858,531 - ABZR87_RS08740 0.63 -1.8 1,858,531 - ABZR87_RS08740 0.63 -0.9 1,858,531 - ABZR87_RS08740 0.63 -0.2 1,858,612 - ABZR87_RS08740 0.74 -2.6 1,858,656 - ABZR87_RS08740 0.79 -1.6 1,858,656 - ABZR87_RS08740 0.79 -0.4 1,858,656 - ABZR87_RS08740 0.79 -0.8 1,858,656 - ABZR87_RS08740 0.79 +2.0 1,858,658 - ABZR87_RS08740 0.80 -0.5 1,858,658 - ABZR87_RS08740 0.80 -0.7 1,858,710 - ABZR87_RS08740 0.86 +0.4 1,858,818 + -1.4 1,858,818 + -1.5 1,858,818 + -1.8 1,858,818 + -1.7 1,858,819 - -0.8 1,858,845 + -0.6 1,858,846 - -2.9 1,858,865 + +1.0 1,858,911 + -0.6 1,858,911 + -1.1 1,858,912 - -0.0 1,858,921 + -0.9 1,858,921 + -1.3 1,858,921 + -1.8 1,858,922 - +0.5 1,858,922 - -1.1 1,858,937 + -1.4 1,858,937 + +1.1 1,858,937 + -1.6 1,858,937 + -1.3 1,858,938 - -0.4 1,858,938 - +0.8 1,858,938 - -0.5 1,858,939 + -0.0 1,858,939 + +0.9 1,858,939 + +0.8 1,858,939 + +1.1 1,858,939 + +0.5 1,858,939 + +0.6 1,858,940 - +0.6 1,858,940 - -0.2 1,858,940 - -0.4 1,858,940 - -0.3 1,858,940 - +2.3 1,858,940 - +2.0 1,858,940 - +0.9 1,858,940 - +0.4 1,858,940 - -0.1 1,858,941 - -1.0 1,858,983 + -0.4 1,858,983 + -0.9 1,858,983 + +0.4 1,858,983 + +0.2 1,858,983 + -2.6 1,858,983 + +0.7 1,858,983 + -0.9 1,858,984 - +0.2 1,859,057 + +0.4 1,859,058 - -0.3 1,859,058 - +0.5 1,859,086 + +0.2 1,859,086 + +0.7 1,859,086 + +0.2
Or see this region's nucleotide sequence