Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08740

Experiment: nitrogen source nitrite 5mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	nitrogen source nitrite 5mM
1,857,084	+		ABZR87_RS08735	0.45	-0.2
1,857,085	-		ABZR87_RS08735	0.45	+1.0
1,857,085	-		ABZR87_RS08735	0.45	+1.6
1,857,085	-		ABZR87_RS08735	0.45	+0.0
1,857,085	-		ABZR87_RS08735	0.45	-1.6
1,857,135	+		ABZR87_RS08735	0.51	-0.2
1,857,135	+		ABZR87_RS08735	0.51	+0.7
1,857,136	-		ABZR87_RS08735	0.51	+0.8
1,857,136	-		ABZR87_RS08735	0.51	+0.0
1,857,136	-		ABZR87_RS08735	0.51	-0.2
1,857,136	-		ABZR87_RS08735	0.51	+0.5
1,857,183	+		ABZR87_RS08735	0.57	-1.2
1,857,183	+		ABZR87_RS08735	0.57	-0.7
1,857,183	+		ABZR87_RS08735	0.57	+0.9
1,857,184	-		ABZR87_RS08735	0.57	+0.9
1,857,184	-		ABZR87_RS08735	0.57	+0.9
1,857,271	+		ABZR87_RS08735	0.67	-0.5
1,857,271	+		ABZR87_RS08735	0.67	-1.0
1,857,271	+		ABZR87_RS08735	0.67	+1.8
1,857,272	-		ABZR87_RS08735	0.67	-1.6
1,857,283	+		ABZR87_RS08735	0.69	+0.4
1,857,283	+		ABZR87_RS08735	0.69	-0.8
1,857,283	+		ABZR87_RS08735	0.69	-0.5
1,857,373	+		ABZR87_RS08735	0.79	-0.8
1,857,373	+		ABZR87_RS08735	0.79	+0.5
1,857,373	+		ABZR87_RS08735	0.79	-1.1
1,857,374	-		ABZR87_RS08735	0.79	+0.7
1,857,449	+		ABZR87_RS08735	0.88	+0.2
1,857,449	+		ABZR87_RS08735	0.88	-0.5
1,857,450	-		ABZR87_RS08735	0.89	-0.8
1,857,450	-		ABZR87_RS08735	0.89	+0.2
1,857,547	+				+1.0
1,857,547	+				+0.3
1,857,548	-				-0.3
1,857,548	-				-0.8
1,857,599	+				+0.9
1,857,599	+				+1.1
1,857,599	+				-0.8
1,857,599	+				+0.2
1,857,600	-				+0.2
1,857,600	-				+0.1
1,857,600	-				-0.2
1,857,600	-				-0.1
1,857,600	-				-0.8
1,857,600	-				+0.1
1,857,600	-				-0.7
1,857,600	-				-0.6
1,857,658	+				-0.5
1,857,690	+				-0.1
1,857,690	+				+0.6
1,857,690	+				-0.4
1,857,690	+				-0.2
1,857,691	-				+0.4
1,857,691	-				-0.6
1,857,691	-				+1.1
1,857,691	-				+0.9
1,857,691	-				+0.3
1,857,691	-				-0.8
1,857,691	-				+0.6
1,857,691	-				-0.1
1,857,691	-				+0.2
1,857,751	+				+0.5
1,857,752	-				-1.4
1,857,773	+				-0.1
1,857,773	+				+0.1
1,857,773	+				+0.8
1,857,774	-				+2.0
1,857,774	-				-1.1
1,857,774	-				+0.3
1,857,792	+				-0.3
1,857,792	+				+0.4
1,857,814	+				-0.1
1,857,814	+				+0.1
1,857,814	+				+0.2
1,857,814	+				-1.7
1,857,815	-				+2.1
1,857,815	-				+0.0
1,857,820	+				+0.2
1,857,821	-				-1.3
1,857,853	+				-0.2
1,857,853	+				-0.3
1,857,854	-				-0.0
1,857,892	+				+2.2
1,857,892	+				+0.7
1,857,892	+				-0.0
1,857,893	-				-0.2
1,857,893	-				+0.7
1,857,896	+				-0.3
1,857,896	+				+0.5
1,857,952	+				+1.3
1,857,953	-				-0.1
1,857,989	+				+0.5
1,857,999	+				-0.0
1,858,008	+				+0.0
1,858,072	-				-1.6
1,858,101	+				-1.4
1,858,101	+				-0.8
1,858,101	+				-2.9
1,858,101	+				-1.2
1,858,104	+				-0.9
1,858,104	+				-0.2
1,858,104	+				-1.3
1,858,104	+				-3.7
1,858,104	+				-1.6
1,858,105	-				-2.1
1,858,127	+		ABZR87_RS08740	0.11	-1.1
1,858,127	+		ABZR87_RS08740	0.11	-1.2
1,858,162	+		ABZR87_RS08740	0.16	-2.2
1,858,163	-		ABZR87_RS08740	0.16	-2.1
1,858,163	-		ABZR87_RS08740	0.16	+0.5
1,858,163	-		ABZR87_RS08740	0.16	-0.5
1,858,189	+		ABZR87_RS08740	0.19	-1.6
1,858,190	-		ABZR87_RS08740	0.19	-3.7
1,858,226	+		ABZR87_RS08740	0.24	-0.0
1,858,227	-		ABZR87_RS08740	0.24	-1.6
1,858,227	-		ABZR87_RS08740	0.24	-2.5
1,858,227	-		ABZR87_RS08740	0.24	-1.3
1,858,277	+		ABZR87_RS08740	0.30	-0.7
1,858,277	+		ABZR87_RS08740	0.30	-1.8
1,858,277	+		ABZR87_RS08740	0.30	-1.1
1,858,277	+		ABZR87_RS08740	0.30	-0.9
1,858,277	+		ABZR87_RS08740	0.30	-0.8
1,858,277	+		ABZR87_RS08740	0.30	-1.0
1,858,277	+		ABZR87_RS08740	0.30	-1.4
1,858,277	+		ABZR87_RS08740	0.30	-1.4
1,858,277	+		ABZR87_RS08740	0.30	-1.9
1,858,278	-		ABZR87_RS08740	0.31	-1.1
1,858,278	-		ABZR87_RS08740	0.31	+0.2
1,858,278	-		ABZR87_RS08740	0.31	-2.1
1,858,278	-		ABZR87_RS08740	0.31	-0.4
1,858,278	-		ABZR87_RS08740	0.31	-1.5
1,858,282	-		ABZR87_RS08740	0.31	-1.0
1,858,360	+		ABZR87_RS08740	0.41	-3.5
1,858,386	+		ABZR87_RS08740	0.45	-0.9
1,858,386	+		ABZR87_RS08740	0.45	-1.3
1,858,387	-		ABZR87_RS08740	0.45	-1.6
1,858,387	-		ABZR87_RS08740	0.45	-0.2
1,858,387	-		ABZR87_RS08740	0.45	-1.1
1,858,428	+		ABZR87_RS08740	0.50	-3.6
1,858,428	+		ABZR87_RS08740	0.50	-1.7
1,858,428	+		ABZR87_RS08740	0.50	-2.4
1,858,429	-		ABZR87_RS08740	0.50	-0.3
1,858,429	-		ABZR87_RS08740	0.50	-1.0
1,858,429	-		ABZR87_RS08740	0.50	-2.9
1,858,435	+		ABZR87_RS08740	0.51	-1.0
1,858,436	-		ABZR87_RS08740	0.51	-2.0
1,858,503	-		ABZR87_RS08740	0.60	-1.2
1,858,503	-		ABZR87_RS08740	0.60	-0.7
1,858,503	-		ABZR87_RS08740	0.60	-2.4
1,858,507	+		ABZR87_RS08740	0.60	-1.1
1,858,526	+		ABZR87_RS08740	0.63	-2.8
1,858,526	+		ABZR87_RS08740	0.63	-1.2
1,858,530	+		ABZR87_RS08740	0.63	-1.8
1,858,530	+		ABZR87_RS08740	0.63	-1.5
1,858,530	+		ABZR87_RS08740	0.63	-1.6
1,858,530	+		ABZR87_RS08740	0.63	-1.7
1,858,530	+		ABZR87_RS08740	0.63	-0.4
1,858,531	-		ABZR87_RS08740	0.63	-1.8
1,858,531	-		ABZR87_RS08740	0.63	-0.9
1,858,531	-		ABZR87_RS08740	0.63	-0.2
1,858,612	-		ABZR87_RS08740	0.74	-2.6
1,858,656	-		ABZR87_RS08740	0.79	-1.6
1,858,656	-		ABZR87_RS08740	0.79	-0.4
1,858,656	-		ABZR87_RS08740	0.79	-0.8
1,858,656	-		ABZR87_RS08740	0.79	+2.0
1,858,658	-		ABZR87_RS08740	0.80	-0.5
1,858,658	-		ABZR87_RS08740	0.80	-0.7
1,858,710	-		ABZR87_RS08740	0.86	+0.4
1,858,818	+				-1.4
1,858,818	+				-1.5
1,858,818	+				-1.8
1,858,818	+				-1.7
1,858,819	-				-0.8
1,858,845	+				-0.6
1,858,846	-				-2.9
1,858,865	+				+1.0
1,858,911	+				-0.6
1,858,911	+				-1.1
1,858,912	-				-0.0
1,858,921	+				-0.9
1,858,921	+				-1.3
1,858,921	+				-1.8
1,858,922	-				+0.5
1,858,922	-				-1.1
1,858,937	+				-1.4
1,858,937	+				+1.1
1,858,937	+				-1.6
1,858,937	+				-1.3
1,858,938	-				-0.4
1,858,938	-				+0.8
1,858,938	-				-0.5
1,858,939	+				-0.0
1,858,939	+				+0.9
1,858,939	+				+0.8
1,858,939	+				+1.1
1,858,939	+				+0.5
1,858,939	+				+0.6
1,858,940	-				+0.6
1,858,940	-				-0.2
1,858,940	-				-0.4
1,858,940	-				-0.3
1,858,940	-				+2.3
1,858,940	-				+2.0
1,858,940	-				+0.9
1,858,940	-				+0.4
1,858,940	-				-0.1
1,858,941	-				-1.0
1,858,983	+				-0.4
1,858,983	+				-0.9
1,858,983	+				+0.4
1,858,983	+				+0.2
1,858,983	+				-2.6
1,858,983	+				+0.7
1,858,983	+				-0.9
1,858,984	-				+0.2
1,859,057	+				+0.4
1,859,058	-				-0.3
1,859,058	-				+0.5
1,859,086	+				+0.2
1,859,086	+				+0.7
1,859,086	+				+0.2