Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08740

Experiment: nitrogen source nitrite 5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08735 and ABZR87_RS08740 are separated by 495 nucleotidesABZR87_RS08740 and ABZR87_RS08745 are separated by 281 nucleotides ABZR87_RS08735: ABZR87_RS08735 - IS256 family transposase, at 1,856,709 to 1,857,545 _RS08735 ABZR87_RS08740: ABZR87_RS08740 - hypothetical protein, at 1,858,041 to 1,858,814 _RS08740 ABZR87_RS08745: ABZR87_RS08745 - phosphomannomutase/phosphoglucomutase, at 1,859,096 to 1,860,484 _RS08745 Position (kb) 1858 1859Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1857.084 kb on + strand, within ABZR87_RS08735at 1857.085 kb on - strand, within ABZR87_RS08735at 1857.085 kb on - strand, within ABZR87_RS08735at 1857.085 kb on - strand, within ABZR87_RS08735at 1857.085 kb on - strand, within ABZR87_RS08735at 1857.135 kb on + strand, within ABZR87_RS08735at 1857.135 kb on + strand, within ABZR87_RS08735at 1857.136 kb on - strand, within ABZR87_RS08735at 1857.136 kb on - strand, within ABZR87_RS08735at 1857.136 kb on - strand, within ABZR87_RS08735at 1857.136 kb on - strand, within ABZR87_RS08735at 1857.183 kb on + strand, within ABZR87_RS08735at 1857.183 kb on + strand, within ABZR87_RS08735at 1857.183 kb on + strand, within ABZR87_RS08735at 1857.184 kb on - strand, within ABZR87_RS08735at 1857.184 kb on - strand, within ABZR87_RS08735at 1857.271 kb on + strand, within ABZR87_RS08735at 1857.271 kb on + strand, within ABZR87_RS08735at 1857.271 kb on + strand, within ABZR87_RS08735at 1857.272 kb on - strand, within ABZR87_RS08735at 1857.283 kb on + strand, within ABZR87_RS08735at 1857.283 kb on + strand, within ABZR87_RS08735at 1857.283 kb on + strand, within ABZR87_RS08735at 1857.373 kb on + strand, within ABZR87_RS08735at 1857.373 kb on + strand, within ABZR87_RS08735at 1857.373 kb on + strand, within ABZR87_RS08735at 1857.374 kb on - strand, within ABZR87_RS08735at 1857.449 kb on + strand, within ABZR87_RS08735at 1857.449 kb on + strand, within ABZR87_RS08735at 1857.450 kb on - strand, within ABZR87_RS08735at 1857.450 kb on - strand, within ABZR87_RS08735at 1857.547 kb on + strandat 1857.547 kb on + strandat 1857.548 kb on - strandat 1857.548 kb on - strandat 1857.599 kb on + strandat 1857.599 kb on + strandat 1857.599 kb on + strandat 1857.599 kb on + strandat 1857.600 kb on - strandat 1857.600 kb on - strandat 1857.600 kb on - strandat 1857.600 kb on - strandat 1857.600 kb on - strandat 1857.600 kb on - strandat 1857.600 kb on - strandat 1857.600 kb on - strandat 1857.658 kb on + strandat 1857.690 kb on + strandat 1857.690 kb on + strandat 1857.690 kb on + strandat 1857.690 kb on + strandat 1857.691 kb on - strandat 1857.691 kb on - strandat 1857.691 kb on - strandat 1857.691 kb on - strandat 1857.691 kb on - strandat 1857.691 kb on - strandat 1857.691 kb on - strandat 1857.691 kb on - strandat 1857.691 kb on - strandat 1857.751 kb on + strandat 1857.752 kb on - strandat 1857.773 kb on + strandat 1857.773 kb on + strandat 1857.773 kb on + strandat 1857.774 kb on - strandat 1857.774 kb on - strandat 1857.774 kb on - strandat 1857.792 kb on + strandat 1857.792 kb on + strandat 1857.814 kb on + strandat 1857.814 kb on + strandat 1857.814 kb on + strandat 1857.814 kb on + strandat 1857.815 kb on - strandat 1857.815 kb on - strandat 1857.820 kb on + strandat 1857.821 kb on - strandat 1857.853 kb on + strandat 1857.853 kb on + strandat 1857.854 kb on - strandat 1857.892 kb on + strandat 1857.892 kb on + strandat 1857.892 kb on + strandat 1857.893 kb on - strandat 1857.893 kb on - strandat 1857.896 kb on + strandat 1857.896 kb on + strandat 1857.952 kb on + strandat 1857.953 kb on - strandat 1857.989 kb on + strandat 1857.999 kb on + strandat 1858.008 kb on + strandat 1858.072 kb on - strandat 1858.101 kb on + strandat 1858.101 kb on + strandat 1858.101 kb on + strandat 1858.101 kb on + strandat 1858.104 kb on + strandat 1858.104 kb on + strandat 1858.104 kb on + strandat 1858.104 kb on + strandat 1858.104 kb on + strandat 1858.105 kb on - strandat 1858.127 kb on + strand, within ABZR87_RS08740at 1858.127 kb on + strand, within ABZR87_RS08740at 1858.162 kb on + strand, within ABZR87_RS08740at 1858.163 kb on - strand, within ABZR87_RS08740at 1858.163 kb on - strand, within ABZR87_RS08740at 1858.163 kb on - strand, within ABZR87_RS08740at 1858.189 kb on + strand, within ABZR87_RS08740at 1858.190 kb on - strand, within ABZR87_RS08740at 1858.226 kb on + strand, within ABZR87_RS08740at 1858.227 kb on - strand, within ABZR87_RS08740at 1858.227 kb on - strand, within ABZR87_RS08740at 1858.227 kb on - strand, within ABZR87_RS08740at 1858.277 kb on + strand, within ABZR87_RS08740at 1858.277 kb on + strand, within ABZR87_RS08740at 1858.277 kb on + strand, within ABZR87_RS08740at 1858.277 kb on + strand, within ABZR87_RS08740at 1858.277 kb on + strand, within ABZR87_RS08740at 1858.277 kb on + strand, within ABZR87_RS08740at 1858.277 kb on + strand, within ABZR87_RS08740at 1858.277 kb on + strand, within ABZR87_RS08740at 1858.277 kb on + strand, within ABZR87_RS08740at 1858.278 kb on - strand, within ABZR87_RS08740at 1858.278 kb on - strand, within ABZR87_RS08740at 1858.278 kb on - strand, within ABZR87_RS08740at 1858.278 kb on - strand, within ABZR87_RS08740at 1858.278 kb on - strand, within ABZR87_RS08740at 1858.282 kb on - strand, within ABZR87_RS08740at 1858.360 kb on + strand, within ABZR87_RS08740at 1858.386 kb on + strand, within ABZR87_RS08740at 1858.386 kb on + strand, within ABZR87_RS08740at 1858.387 kb on - strand, within ABZR87_RS08740at 1858.387 kb on - strand, within ABZR87_RS08740at 1858.387 kb on - strand, within ABZR87_RS08740at 1858.428 kb on + strand, within ABZR87_RS08740at 1858.428 kb on + strand, within ABZR87_RS08740at 1858.428 kb on + strand, within ABZR87_RS08740at 1858.429 kb on - strand, within ABZR87_RS08740at 1858.429 kb on - strand, within ABZR87_RS08740at 1858.429 kb on - strand, within ABZR87_RS08740at 1858.435 kb on + strand, within ABZR87_RS08740at 1858.436 kb on - strand, within ABZR87_RS08740at 1858.503 kb on - strand, within ABZR87_RS08740at 1858.503 kb on - strand, within ABZR87_RS08740at 1858.503 kb on - strand, within ABZR87_RS08740at 1858.507 kb on + strand, within ABZR87_RS08740at 1858.526 kb on + strand, within ABZR87_RS08740at 1858.526 kb on + strand, within ABZR87_RS08740at 1858.530 kb on + strand, within ABZR87_RS08740at 1858.530 kb on + strand, within ABZR87_RS08740at 1858.530 kb on + strand, within ABZR87_RS08740at 1858.530 kb on + strand, within ABZR87_RS08740at 1858.530 kb on + strand, within ABZR87_RS08740at 1858.531 kb on - strand, within ABZR87_RS08740at 1858.531 kb on - strand, within ABZR87_RS08740at 1858.531 kb on - strand, within ABZR87_RS08740at 1858.612 kb on - strand, within ABZR87_RS08740at 1858.656 kb on - strand, within ABZR87_RS08740at 1858.656 kb on - strand, within ABZR87_RS08740at 1858.656 kb on - strand, within ABZR87_RS08740at 1858.656 kb on - strand, within ABZR87_RS08740at 1858.658 kb on - strand, within ABZR87_RS08740at 1858.658 kb on - strand, within ABZR87_RS08740at 1858.710 kb on - strand, within ABZR87_RS08740at 1858.818 kb on + strandat 1858.818 kb on + strandat 1858.818 kb on + strandat 1858.818 kb on + strandat 1858.819 kb on - strandat 1858.845 kb on + strandat 1858.846 kb on - strandat 1858.865 kb on + strandat 1858.911 kb on + strandat 1858.911 kb on + strandat 1858.912 kb on - strandat 1858.921 kb on + strandat 1858.921 kb on + strandat 1858.921 kb on + strandat 1858.922 kb on - strandat 1858.922 kb on - strandat 1858.937 kb on + strandat 1858.937 kb on + strandat 1858.937 kb on + strandat 1858.937 kb on + strandat 1858.938 kb on - strandat 1858.938 kb on - strandat 1858.938 kb on - strandat 1858.939 kb on + strandat 1858.939 kb on + strandat 1858.939 kb on + strandat 1858.939 kb on + strandat 1858.939 kb on + strandat 1858.939 kb on + strandat 1858.940 kb on - strandat 1858.940 kb on - strandat 1858.940 kb on - strandat 1858.940 kb on - strandat 1858.940 kb on - strandat 1858.940 kb on - strandat 1858.940 kb on - strandat 1858.940 kb on - strandat 1858.940 kb on - strandat 1858.941 kb on - strandat 1858.983 kb on + strandat 1858.983 kb on + strandat 1858.983 kb on + strandat 1858.983 kb on + strandat 1858.983 kb on + strandat 1858.983 kb on + strandat 1858.983 kb on + strandat 1858.984 kb on - strandat 1859.057 kb on + strandat 1859.058 kb on - strandat 1859.058 kb on - strandat 1859.086 kb on + strandat 1859.086 kb on + strandat 1859.086 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 5mM
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1,857,084 + ABZR87_RS08735 0.45 -0.2
1,857,085 - ABZR87_RS08735 0.45 +1.0
1,857,085 - ABZR87_RS08735 0.45 +1.6
1,857,085 - ABZR87_RS08735 0.45 +0.0
1,857,085 - ABZR87_RS08735 0.45 -1.6
1,857,135 + ABZR87_RS08735 0.51 -0.2
1,857,135 + ABZR87_RS08735 0.51 +0.7
1,857,136 - ABZR87_RS08735 0.51 +0.8
1,857,136 - ABZR87_RS08735 0.51 +0.0
1,857,136 - ABZR87_RS08735 0.51 -0.2
1,857,136 - ABZR87_RS08735 0.51 +0.5
1,857,183 + ABZR87_RS08735 0.57 -1.2
1,857,183 + ABZR87_RS08735 0.57 -0.7
1,857,183 + ABZR87_RS08735 0.57 +0.9
1,857,184 - ABZR87_RS08735 0.57 +0.9
1,857,184 - ABZR87_RS08735 0.57 +0.9
1,857,271 + ABZR87_RS08735 0.67 -0.5
1,857,271 + ABZR87_RS08735 0.67 -1.0
1,857,271 + ABZR87_RS08735 0.67 +1.8
1,857,272 - ABZR87_RS08735 0.67 -1.6
1,857,283 + ABZR87_RS08735 0.69 +0.4
1,857,283 + ABZR87_RS08735 0.69 -0.8
1,857,283 + ABZR87_RS08735 0.69 -0.5
1,857,373 + ABZR87_RS08735 0.79 -0.8
1,857,373 + ABZR87_RS08735 0.79 +0.5
1,857,373 + ABZR87_RS08735 0.79 -1.1
1,857,374 - ABZR87_RS08735 0.79 +0.7
1,857,449 + ABZR87_RS08735 0.88 +0.2
1,857,449 + ABZR87_RS08735 0.88 -0.5
1,857,450 - ABZR87_RS08735 0.89 -0.8
1,857,450 - ABZR87_RS08735 0.89 +0.2
1,857,547 + +1.0
1,857,547 + +0.3
1,857,548 - -0.3
1,857,548 - -0.8
1,857,599 + +0.9
1,857,599 + +1.1
1,857,599 + -0.8
1,857,599 + +0.2
1,857,600 - +0.2
1,857,600 - +0.1
1,857,600 - -0.2
1,857,600 - -0.1
1,857,600 - -0.8
1,857,600 - +0.1
1,857,600 - -0.7
1,857,600 - -0.6
1,857,658 + -0.5
1,857,690 + -0.1
1,857,690 + +0.6
1,857,690 + -0.4
1,857,690 + -0.2
1,857,691 - +0.4
1,857,691 - -0.6
1,857,691 - +1.1
1,857,691 - +0.9
1,857,691 - +0.3
1,857,691 - -0.8
1,857,691 - +0.6
1,857,691 - -0.1
1,857,691 - +0.2
1,857,751 + +0.5
1,857,752 - -1.4
1,857,773 + -0.1
1,857,773 + +0.1
1,857,773 + +0.8
1,857,774 - +2.0
1,857,774 - -1.1
1,857,774 - +0.3
1,857,792 + -0.3
1,857,792 + +0.4
1,857,814 + -0.1
1,857,814 + +0.1
1,857,814 + +0.2
1,857,814 + -1.7
1,857,815 - +2.1
1,857,815 - +0.0
1,857,820 + +0.2
1,857,821 - -1.3
1,857,853 + -0.2
1,857,853 + -0.3
1,857,854 - -0.0
1,857,892 + +2.2
1,857,892 + +0.7
1,857,892 + -0.0
1,857,893 - -0.2
1,857,893 - +0.7
1,857,896 + -0.3
1,857,896 + +0.5
1,857,952 + +1.3
1,857,953 - -0.1
1,857,989 + +0.5
1,857,999 + -0.0
1,858,008 + +0.0
1,858,072 - -1.6
1,858,101 + -1.4
1,858,101 + -0.8
1,858,101 + -2.9
1,858,101 + -1.2
1,858,104 + -0.9
1,858,104 + -0.2
1,858,104 + -1.3
1,858,104 + -3.7
1,858,104 + -1.6
1,858,105 - -2.1
1,858,127 + ABZR87_RS08740 0.11 -1.1
1,858,127 + ABZR87_RS08740 0.11 -1.2
1,858,162 + ABZR87_RS08740 0.16 -2.2
1,858,163 - ABZR87_RS08740 0.16 -2.1
1,858,163 - ABZR87_RS08740 0.16 +0.5
1,858,163 - ABZR87_RS08740 0.16 -0.5
1,858,189 + ABZR87_RS08740 0.19 -1.6
1,858,190 - ABZR87_RS08740 0.19 -3.7
1,858,226 + ABZR87_RS08740 0.24 -0.0
1,858,227 - ABZR87_RS08740 0.24 -1.6
1,858,227 - ABZR87_RS08740 0.24 -2.5
1,858,227 - ABZR87_RS08740 0.24 -1.3
1,858,277 + ABZR87_RS08740 0.30 -0.7
1,858,277 + ABZR87_RS08740 0.30 -1.8
1,858,277 + ABZR87_RS08740 0.30 -1.1
1,858,277 + ABZR87_RS08740 0.30 -0.9
1,858,277 + ABZR87_RS08740 0.30 -0.8
1,858,277 + ABZR87_RS08740 0.30 -1.0
1,858,277 + ABZR87_RS08740 0.30 -1.4
1,858,277 + ABZR87_RS08740 0.30 -1.4
1,858,277 + ABZR87_RS08740 0.30 -1.9
1,858,278 - ABZR87_RS08740 0.31 -1.1
1,858,278 - ABZR87_RS08740 0.31 +0.2
1,858,278 - ABZR87_RS08740 0.31 -2.1
1,858,278 - ABZR87_RS08740 0.31 -0.4
1,858,278 - ABZR87_RS08740 0.31 -1.5
1,858,282 - ABZR87_RS08740 0.31 -1.0
1,858,360 + ABZR87_RS08740 0.41 -3.5
1,858,386 + ABZR87_RS08740 0.45 -0.9
1,858,386 + ABZR87_RS08740 0.45 -1.3
1,858,387 - ABZR87_RS08740 0.45 -1.6
1,858,387 - ABZR87_RS08740 0.45 -0.2
1,858,387 - ABZR87_RS08740 0.45 -1.1
1,858,428 + ABZR87_RS08740 0.50 -3.6
1,858,428 + ABZR87_RS08740 0.50 -1.7
1,858,428 + ABZR87_RS08740 0.50 -2.4
1,858,429 - ABZR87_RS08740 0.50 -0.3
1,858,429 - ABZR87_RS08740 0.50 -1.0
1,858,429 - ABZR87_RS08740 0.50 -2.9
1,858,435 + ABZR87_RS08740 0.51 -1.0
1,858,436 - ABZR87_RS08740 0.51 -2.0
1,858,503 - ABZR87_RS08740 0.60 -1.2
1,858,503 - ABZR87_RS08740 0.60 -0.7
1,858,503 - ABZR87_RS08740 0.60 -2.4
1,858,507 + ABZR87_RS08740 0.60 -1.1
1,858,526 + ABZR87_RS08740 0.63 -2.8
1,858,526 + ABZR87_RS08740 0.63 -1.2
1,858,530 + ABZR87_RS08740 0.63 -1.8
1,858,530 + ABZR87_RS08740 0.63 -1.5
1,858,530 + ABZR87_RS08740 0.63 -1.6
1,858,530 + ABZR87_RS08740 0.63 -1.7
1,858,530 + ABZR87_RS08740 0.63 -0.4
1,858,531 - ABZR87_RS08740 0.63 -1.8
1,858,531 - ABZR87_RS08740 0.63 -0.9
1,858,531 - ABZR87_RS08740 0.63 -0.2
1,858,612 - ABZR87_RS08740 0.74 -2.6
1,858,656 - ABZR87_RS08740 0.79 -1.6
1,858,656 - ABZR87_RS08740 0.79 -0.4
1,858,656 - ABZR87_RS08740 0.79 -0.8
1,858,656 - ABZR87_RS08740 0.79 +2.0
1,858,658 - ABZR87_RS08740 0.80 -0.5
1,858,658 - ABZR87_RS08740 0.80 -0.7
1,858,710 - ABZR87_RS08740 0.86 +0.4
1,858,818 + -1.4
1,858,818 + -1.5
1,858,818 + -1.8
1,858,818 + -1.7
1,858,819 - -0.8
1,858,845 + -0.6
1,858,846 - -2.9
1,858,865 + +1.0
1,858,911 + -0.6
1,858,911 + -1.1
1,858,912 - -0.0
1,858,921 + -0.9
1,858,921 + -1.3
1,858,921 + -1.8
1,858,922 - +0.5
1,858,922 - -1.1
1,858,937 + -1.4
1,858,937 + +1.1
1,858,937 + -1.6
1,858,937 + -1.3
1,858,938 - -0.4
1,858,938 - +0.8
1,858,938 - -0.5
1,858,939 + -0.0
1,858,939 + +0.9
1,858,939 + +0.8
1,858,939 + +1.1
1,858,939 + +0.5
1,858,939 + +0.6
1,858,940 - +0.6
1,858,940 - -0.2
1,858,940 - -0.4
1,858,940 - -0.3
1,858,940 - +2.3
1,858,940 - +2.0
1,858,940 - +0.9
1,858,940 - +0.4
1,858,940 - -0.1
1,858,941 - -1.0
1,858,983 + -0.4
1,858,983 + -0.9
1,858,983 + +0.4
1,858,983 + +0.2
1,858,983 + -2.6
1,858,983 + +0.7
1,858,983 + -0.9
1,858,984 - +0.2
1,859,057 + +0.4
1,859,058 - -0.3
1,859,058 - +0.5
1,859,086 + +0.2
1,859,086 + +0.7
1,859,086 + +0.2

Or see this region's nucleotide sequence