Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06470

Experiment: nitrogen source nitrite 5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06465 and ABZR87_RS06470 are separated by 86 nucleotidesABZR87_RS06470 and ABZR87_RS06475 are separated by 56 nucleotidesABZR87_RS06475 and ABZR87_RS06480 are separated by 3 nucleotides ABZR87_RS06465: ABZR87_RS06465 - ABC transporter substrate-binding protein, at 1,376,850 to 1,378,013 _RS06465 ABZR87_RS06470: ABZR87_RS06470 - enoyl-CoA hydratase/isomerase family protein, at 1,378,100 to 1,378,918 _RS06470 ABZR87_RS06475: ABZR87_RS06475 - PhaM family polyhydroxyalkanoate granule multifunctional regulatory protein, at 1,378,975 to 1,379,865 _RS06475 ABZR87_RS06480: ABZR87_RS06480 - patatin-like phospholipase family protein, at 1,379,869 to 1,381,053 _RS06480 Position (kb) 1378 1379Strain fitness (log2 ratio) -2 -1 0 1 2at 1377.146 kb on + strand, within ABZR87_RS06465at 1377.146 kb on + strand, within ABZR87_RS06465at 1377.333 kb on + strand, within ABZR87_RS06465at 1377.333 kb on + strand, within ABZR87_RS06465at 1377.333 kb on + strand, within ABZR87_RS06465at 1377.333 kb on + strand, within ABZR87_RS06465at 1377.333 kb on + strand, within ABZR87_RS06465at 1377.333 kb on + strand, within ABZR87_RS06465at 1377.333 kb on + strand, within ABZR87_RS06465at 1377.334 kb on - strand, within ABZR87_RS06465at 1377.334 kb on - strand, within ABZR87_RS06465at 1377.334 kb on - strand, within ABZR87_RS06465at 1377.334 kb on - strand, within ABZR87_RS06465at 1377.334 kb on - strand, within ABZR87_RS06465at 1377.558 kb on + strand, within ABZR87_RS06465at 1377.558 kb on + strand, within ABZR87_RS06465at 1377.558 kb on + strand, within ABZR87_RS06465at 1377.573 kb on + strand, within ABZR87_RS06465at 1377.574 kb on - strand, within ABZR87_RS06465at 1377.574 kb on - strand, within ABZR87_RS06465at 1377.574 kb on - strand, within ABZR87_RS06465at 1377.574 kb on - strand, within ABZR87_RS06465at 1377.589 kb on + strand, within ABZR87_RS06465at 1377.590 kb on - strand, within ABZR87_RS06465at 1377.590 kb on - strand, within ABZR87_RS06465at 1377.639 kb on + strand, within ABZR87_RS06465at 1377.639 kb on + strand, within ABZR87_RS06465at 1377.640 kb on - strand, within ABZR87_RS06465at 1377.640 kb on - strand, within ABZR87_RS06465at 1377.726 kb on + strand, within ABZR87_RS06465at 1377.727 kb on - strand, within ABZR87_RS06465at 1377.772 kb on - strand, within ABZR87_RS06465at 1378.073 kb on + strandat 1378.073 kb on + strandat 1378.074 kb on - strandat 1378.074 kb on - strandat 1378.087 kb on + strandat 1378.087 kb on + strandat 1378.087 kb on + strandat 1378.088 kb on - strandat 1378.088 kb on - strandat 1378.088 kb on - strandat 1378.088 kb on - strandat 1378.130 kb on + strandat 1378.173 kb on + strandat 1378.409 kb on + strand, within ABZR87_RS06470at 1378.409 kb on + strand, within ABZR87_RS06470at 1378.410 kb on - strand, within ABZR87_RS06470at 1378.410 kb on - strand, within ABZR87_RS06470at 1378.498 kb on + strand, within ABZR87_RS06470at 1378.498 kb on + strand, within ABZR87_RS06470at 1378.616 kb on + strand, within ABZR87_RS06470at 1378.616 kb on + strand, within ABZR87_RS06470at 1378.616 kb on + strand, within ABZR87_RS06470at 1378.616 kb on + strand, within ABZR87_RS06470at 1378.616 kb on + strand, within ABZR87_RS06470at 1378.616 kb on + strand, within ABZR87_RS06470at 1378.616 kb on - strand, within ABZR87_RS06470at 1378.617 kb on - strand, within ABZR87_RS06470at 1378.617 kb on - strand, within ABZR87_RS06470at 1378.617 kb on - strand, within ABZR87_RS06470at 1378.617 kb on - strand, within ABZR87_RS06470at 1378.617 kb on - strand, within ABZR87_RS06470at 1378.617 kb on - strand, within ABZR87_RS06470at 1378.617 kb on - strand, within ABZR87_RS06470at 1378.617 kb on - strand, within ABZR87_RS06470at 1378.619 kb on + strand, within ABZR87_RS06470at 1378.619 kb on + strand, within ABZR87_RS06470at 1378.619 kb on + strand, within ABZR87_RS06470at 1378.619 kb on + strand, within ABZR87_RS06470at 1378.619 kb on + strand, within ABZR87_RS06470at 1378.620 kb on - strand, within ABZR87_RS06470at 1378.620 kb on - strand, within ABZR87_RS06470at 1378.620 kb on - strand, within ABZR87_RS06470at 1378.620 kb on - strand, within ABZR87_RS06470at 1378.620 kb on - strand, within ABZR87_RS06470at 1378.772 kb on + strand, within ABZR87_RS06470at 1378.772 kb on + strand, within ABZR87_RS06470at 1378.772 kb on + strand, within ABZR87_RS06470at 1378.773 kb on - strand, within ABZR87_RS06470at 1378.773 kb on - strand, within ABZR87_RS06470at 1378.816 kb on + strand, within ABZR87_RS06470at 1378.817 kb on - strand, within ABZR87_RS06470at 1378.964 kb on + strandat 1378.964 kb on + strandat 1378.965 kb on - strandat 1379.697 kb on + strand, within ABZR87_RS06475at 1379.698 kb on - strand, within ABZR87_RS06475at 1379.698 kb on - strand, within ABZR87_RS06475at 1379.706 kb on + strand, within ABZR87_RS06475at 1379.707 kb on - strand, within ABZR87_RS06475at 1379.707 kb on - strand, within ABZR87_RS06475at 1379.707 kb on - strand, within ABZR87_RS06475at 1379.707 kb on - strand, within ABZR87_RS06475

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 5mM
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1,377,146 + ABZR87_RS06465 0.25 +0.5
1,377,146 + ABZR87_RS06465 0.25 -0.3
1,377,333 + ABZR87_RS06465 0.41 -0.1
1,377,333 + ABZR87_RS06465 0.41 -1.6
1,377,333 + ABZR87_RS06465 0.41 +1.1
1,377,333 + ABZR87_RS06465 0.41 +1.3
1,377,333 + ABZR87_RS06465 0.41 +0.5
1,377,333 + ABZR87_RS06465 0.41 -0.5
1,377,333 + ABZR87_RS06465 0.41 -0.1
1,377,334 - ABZR87_RS06465 0.42 -0.8
1,377,334 - ABZR87_RS06465 0.42 +0.0
1,377,334 - ABZR87_RS06465 0.42 -0.5
1,377,334 - ABZR87_RS06465 0.42 -1.2
1,377,334 - ABZR87_RS06465 0.42 +0.9
1,377,558 + ABZR87_RS06465 0.61 +1.1
1,377,558 + ABZR87_RS06465 0.61 +1.4
1,377,558 + ABZR87_RS06465 0.61 -0.3
1,377,573 + ABZR87_RS06465 0.62 +0.6
1,377,574 - ABZR87_RS06465 0.62 +0.0
1,377,574 - ABZR87_RS06465 0.62 +0.2
1,377,574 - ABZR87_RS06465 0.62 -0.3
1,377,574 - ABZR87_RS06465 0.62 -0.2
1,377,589 + ABZR87_RS06465 0.63 +0.7
1,377,590 - ABZR87_RS06465 0.64 +0.1
1,377,590 - ABZR87_RS06465 0.64 +0.6
1,377,639 + ABZR87_RS06465 0.68 -0.8
1,377,639 + ABZR87_RS06465 0.68 +0.8
1,377,640 - ABZR87_RS06465 0.68 -0.2
1,377,640 - ABZR87_RS06465 0.68 +0.3
1,377,726 + ABZR87_RS06465 0.75 -0.0
1,377,727 - ABZR87_RS06465 0.75 +0.3
1,377,772 - ABZR87_RS06465 0.79 -1.1
1,378,073 + -0.5
1,378,073 + -0.0
1,378,074 - -1.0
1,378,074 - -0.1
1,378,087 + -0.7
1,378,087 + +0.3
1,378,087 + -0.7
1,378,088 - +0.2
1,378,088 - -0.1
1,378,088 - -0.2
1,378,088 - -0.0
1,378,130 + +2.5
1,378,173 + +2.3
1,378,409 + ABZR87_RS06470 0.38 -0.3
1,378,409 + ABZR87_RS06470 0.38 -1.2
1,378,410 - ABZR87_RS06470 0.38 -0.6
1,378,410 - ABZR87_RS06470 0.38 -0.1
1,378,498 + ABZR87_RS06470 0.49 +1.1
1,378,498 + ABZR87_RS06470 0.49 -1.2
1,378,616 + ABZR87_RS06470 0.63 +0.4
1,378,616 + ABZR87_RS06470 0.63 +0.3
1,378,616 + ABZR87_RS06470 0.63 +0.4
1,378,616 + ABZR87_RS06470 0.63 -0.9
1,378,616 + ABZR87_RS06470 0.63 +0.0
1,378,616 + ABZR87_RS06470 0.63 -1.4
1,378,616 - ABZR87_RS06470 0.63 -1.0
1,378,617 - ABZR87_RS06470 0.63 +0.2
1,378,617 - ABZR87_RS06470 0.63 -1.0
1,378,617 - ABZR87_RS06470 0.63 -0.3
1,378,617 - ABZR87_RS06470 0.63 -0.1
1,378,617 - ABZR87_RS06470 0.63 +0.9
1,378,617 - ABZR87_RS06470 0.63 -1.4
1,378,617 - ABZR87_RS06470 0.63 -1.3
1,378,617 - ABZR87_RS06470 0.63 +0.3
1,378,619 + ABZR87_RS06470 0.63 -0.4
1,378,619 + ABZR87_RS06470 0.63 +0.8
1,378,619 + ABZR87_RS06470 0.63 +1.0
1,378,619 + ABZR87_RS06470 0.63 +0.2
1,378,619 + ABZR87_RS06470 0.63 +0.1
1,378,620 - ABZR87_RS06470 0.63 +0.7
1,378,620 - ABZR87_RS06470 0.63 +0.3
1,378,620 - ABZR87_RS06470 0.63 +1.4
1,378,620 - ABZR87_RS06470 0.63 -0.4
1,378,620 - ABZR87_RS06470 0.63 -0.3
1,378,772 + ABZR87_RS06470 0.82 -0.4
1,378,772 + ABZR87_RS06470 0.82 -0.8
1,378,772 + ABZR87_RS06470 0.82 -0.8
1,378,773 - ABZR87_RS06470 0.82 -0.3
1,378,773 - ABZR87_RS06470 0.82 +0.6
1,378,816 + ABZR87_RS06470 0.87 -0.5
1,378,817 - ABZR87_RS06470 0.88 -0.6
1,378,964 + +2.3
1,378,964 + -0.3
1,378,965 - +0.3
1,379,697 + ABZR87_RS06475 0.81 -0.4
1,379,698 - ABZR87_RS06475 0.81 +0.7
1,379,698 - ABZR87_RS06475 0.81 -2.6
1,379,706 + ABZR87_RS06475 0.82 -0.1
1,379,707 - ABZR87_RS06475 0.82 -0.5
1,379,707 - ABZR87_RS06475 0.82 +1.4
1,379,707 - ABZR87_RS06475 0.82 +1.1
1,379,707 - ABZR87_RS06475 0.82 +1.2

Or see this region's nucleotide sequence