Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02415

Experiment: nitrogen source nitrite 5mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02410 and ABZR87_RS02415 are separated by 107 nucleotidesABZR87_RS02415 and ABZR87_RS02420 overlap by 4 nucleotides ABZR87_RS02410: ABZR87_RS02410 - extracellular solute-binding protein, at 514,510 to 515,652 _RS02410 ABZR87_RS02415: ABZR87_RS02415 - response regulator, at 515,760 to 516,461 _RS02415 ABZR87_RS02420: ABZR87_RS02420 - sensor histidine kinase, at 516,458 to 517,987 _RS02420 Position (kb) 515 516 517Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 514.776 kb on + strand, within ABZR87_RS02410at 514.776 kb on + strand, within ABZR87_RS02410at 514.776 kb on + strand, within ABZR87_RS02410at 514.776 kb on + strand, within ABZR87_RS02410at 514.776 kb on + strand, within ABZR87_RS02410at 514.776 kb on + strand, within ABZR87_RS02410at 514.777 kb on - strand, within ABZR87_RS02410at 514.805 kb on + strand, within ABZR87_RS02410at 514.806 kb on - strand, within ABZR87_RS02410at 514.806 kb on - strand, within ABZR87_RS02410at 514.821 kb on - strand, within ABZR87_RS02410at 514.850 kb on + strand, within ABZR87_RS02410at 514.862 kb on + strand, within ABZR87_RS02410at 514.862 kb on + strand, within ABZR87_RS02410at 514.863 kb on - strand, within ABZR87_RS02410at 514.863 kb on - strand, within ABZR87_RS02410at 514.863 kb on - strand, within ABZR87_RS02410at 514.863 kb on - strand, within ABZR87_RS02410at 514.880 kb on + strand, within ABZR87_RS02410at 514.880 kb on + strand, within ABZR87_RS02410at 514.881 kb on - strand, within ABZR87_RS02410at 514.937 kb on + strand, within ABZR87_RS02410at 514.937 kb on + strand, within ABZR87_RS02410at 514.937 kb on + strand, within ABZR87_RS02410at 514.937 kb on + strand, within ABZR87_RS02410at 514.937 kb on + strand, within ABZR87_RS02410at 514.937 kb on + strand, within ABZR87_RS02410at 514.937 kb on + strand, within ABZR87_RS02410at 514.937 kb on + strand, within ABZR87_RS02410at 514.937 kb on + strand, within ABZR87_RS02410at 514.938 kb on - strand, within ABZR87_RS02410at 514.938 kb on - strand, within ABZR87_RS02410at 514.938 kb on - strand, within ABZR87_RS02410at 514.938 kb on - strand, within ABZR87_RS02410at 514.938 kb on - strand, within ABZR87_RS02410at 514.938 kb on - strand, within ABZR87_RS02410at 514.938 kb on - strand, within ABZR87_RS02410at 515.048 kb on + strand, within ABZR87_RS02410at 515.048 kb on + strand, within ABZR87_RS02410at 515.048 kb on + strand, within ABZR87_RS02410at 515.048 kb on + strand, within ABZR87_RS02410at 515.049 kb on - strand, within ABZR87_RS02410at 515.049 kb on - strand, within ABZR87_RS02410at 515.049 kb on - strand, within ABZR87_RS02410at 515.049 kb on - strand, within ABZR87_RS02410at 515.049 kb on - strand, within ABZR87_RS02410at 515.153 kb on + strand, within ABZR87_RS02410at 515.154 kb on - strand, within ABZR87_RS02410at 515.154 kb on - strand, within ABZR87_RS02410at 515.174 kb on + strand, within ABZR87_RS02410at 515.174 kb on + strand, within ABZR87_RS02410at 515.174 kb on + strand, within ABZR87_RS02410at 515.174 kb on + strand, within ABZR87_RS02410at 515.174 kb on + strand, within ABZR87_RS02410at 515.174 kb on + strand, within ABZR87_RS02410at 515.175 kb on - strand, within ABZR87_RS02410at 515.175 kb on - strand, within ABZR87_RS02410at 515.175 kb on - strand, within ABZR87_RS02410at 515.175 kb on - strand, within ABZR87_RS02410at 515.223 kb on - strand, within ABZR87_RS02410at 515.223 kb on - strand, within ABZR87_RS02410at 515.223 kb on - strand, within ABZR87_RS02410at 515.223 kb on - strand, within ABZR87_RS02410at 515.243 kb on + strand, within ABZR87_RS02410at 515.243 kb on + strand, within ABZR87_RS02410at 515.243 kb on + strand, within ABZR87_RS02410at 515.244 kb on - strand, within ABZR87_RS02410at 515.244 kb on - strand, within ABZR87_RS02410at 515.433 kb on - strand, within ABZR87_RS02410at 515.459 kb on + strand, within ABZR87_RS02410at 515.459 kb on + strand, within ABZR87_RS02410at 515.460 kb on - strand, within ABZR87_RS02410at 515.460 kb on - strand, within ABZR87_RS02410at 515.507 kb on + strand, within ABZR87_RS02410at 515.519 kb on + strand, within ABZR87_RS02410at 515.522 kb on + strand, within ABZR87_RS02410at 515.522 kb on + strand, within ABZR87_RS02410at 515.522 kb on + strand, within ABZR87_RS02410at 515.522 kb on + strand, within ABZR87_RS02410at 515.522 kb on + strand, within ABZR87_RS02410at 515.523 kb on - strand, within ABZR87_RS02410at 515.523 kb on - strand, within ABZR87_RS02410at 515.523 kb on - strand, within ABZR87_RS02410at 515.523 kb on - strand, within ABZR87_RS02410at 515.523 kb on - strand, within ABZR87_RS02410at 515.523 kb on - strand, within ABZR87_RS02410at 515.523 kb on - strand, within ABZR87_RS02410at 515.523 kb on - strand, within ABZR87_RS02410at 515.638 kb on + strandat 515.638 kb on + strandat 515.638 kb on + strandat 515.638 kb on + strandat 515.638 kb on + strandat 515.639 kb on - strandat 515.639 kb on - strandat 515.639 kb on - strandat 515.667 kb on + strandat 515.686 kb on - strandat 515.719 kb on + strandat 515.720 kb on - strandat 515.720 kb on - strandat 515.720 kb on - strandat 515.732 kb on + strandat 515.733 kb on - strandat 515.745 kb on - strandat 515.992 kb on + strand, within ABZR87_RS02415at 516.376 kb on + strand, within ABZR87_RS02415at 516.376 kb on + strand, within ABZR87_RS02415at 516.376 kb on + strand, within ABZR87_RS02415at 516.376 kb on + strand, within ABZR87_RS02415at 516.377 kb on - strand, within ABZR87_RS02415at 516.377 kb on - strand, within ABZR87_RS02415at 516.377 kb on - strand, within ABZR87_RS02415at 516.405 kb on + strandat 516.405 kb on + strandat 516.405 kb on + strandat 516.405 kb on + strandat 516.406 kb on - strandat 516.406 kb on - strandat 516.406 kb on - strandat 516.406 kb on - strandat 516.406 kb on - strandat 516.570 kb on - strandat 516.602 kb on + strandat 516.603 kb on - strandat 516.603 kb on - strandat 516.686 kb on + strand, within ABZR87_RS02420at 516.686 kb on + strand, within ABZR87_RS02420at 516.686 kb on + strand, within ABZR87_RS02420at 516.686 kb on + strand, within ABZR87_RS02420at 516.686 kb on + strand, within ABZR87_RS02420at 516.687 kb on - strand, within ABZR87_RS02420at 516.687 kb on - strand, within ABZR87_RS02420at 516.687 kb on - strand, within ABZR87_RS02420at 516.687 kb on - strand, within ABZR87_RS02420at 516.731 kb on + strand, within ABZR87_RS02420at 516.731 kb on + strand, within ABZR87_RS02420at 516.731 kb on + strand, within ABZR87_RS02420at 516.731 kb on + strand, within ABZR87_RS02420at 516.731 kb on + strand, within ABZR87_RS02420at 516.732 kb on - strand, within ABZR87_RS02420at 516.732 kb on - strand, within ABZR87_RS02420at 516.732 kb on - strand, within ABZR87_RS02420at 516.732 kb on - strand, within ABZR87_RS02420at 516.732 kb on - strand, within ABZR87_RS02420at 516.732 kb on - strand, within ABZR87_RS02420at 516.732 kb on - strand, within ABZR87_RS02420at 516.734 kb on + strand, within ABZR87_RS02420at 516.734 kb on + strand, within ABZR87_RS02420at 516.734 kb on + strand, within ABZR87_RS02420at 516.791 kb on + strand, within ABZR87_RS02420at 516.845 kb on + strand, within ABZR87_RS02420at 516.845 kb on + strand, within ABZR87_RS02420at 516.845 kb on + strand, within ABZR87_RS02420at 516.845 kb on + strand, within ABZR87_RS02420at 516.846 kb on - strand, within ABZR87_RS02420at 516.846 kb on - strand, within ABZR87_RS02420at 516.846 kb on - strand, within ABZR87_RS02420at 516.846 kb on - strand, within ABZR87_RS02420at 516.846 kb on - strand, within ABZR87_RS02420at 516.846 kb on - strand, within ABZR87_RS02420at 516.857 kb on + strand, within ABZR87_RS02420at 516.857 kb on + strand, within ABZR87_RS02420at 516.857 kb on + strand, within ABZR87_RS02420at 516.858 kb on - strand, within ABZR87_RS02420at 516.858 kb on - strand, within ABZR87_RS02420at 516.902 kb on + strand, within ABZR87_RS02420at 516.903 kb on - strand, within ABZR87_RS02420at 516.903 kb on - strand, within ABZR87_RS02420at 517.193 kb on + strand, within ABZR87_RS02420at 517.194 kb on - strand, within ABZR87_RS02420at 517.274 kb on - strand, within ABZR87_RS02420at 517.274 kb on - strand, within ABZR87_RS02420at 517.274 kb on - strand, within ABZR87_RS02420at 517.274 kb on - strand, within ABZR87_RS02420at 517.274 kb on - strand, within ABZR87_RS02420at 517.286 kb on + strand, within ABZR87_RS02420at 517.287 kb on - strand, within ABZR87_RS02420

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Per-strain Table

Position Strand Gene LocusTag Fraction nitrogen source nitrite 5mM
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514,776 + ABZR87_RS02410 0.23 -1.0
514,776 + ABZR87_RS02410 0.23 -2.9
514,776 + ABZR87_RS02410 0.23 -1.8
514,776 + ABZR87_RS02410 0.23 -1.1
514,776 + ABZR87_RS02410 0.23 -0.2
514,776 + ABZR87_RS02410 0.23 -0.4
514,777 - ABZR87_RS02410 0.23 +0.9
514,805 + ABZR87_RS02410 0.26 -0.2
514,806 - ABZR87_RS02410 0.26 -0.0
514,806 - ABZR87_RS02410 0.26 +0.3
514,821 - ABZR87_RS02410 0.27 -0.6
514,850 + ABZR87_RS02410 0.30 +0.4
514,862 + ABZR87_RS02410 0.31 +0.0
514,862 + ABZR87_RS02410 0.31 -0.1
514,863 - ABZR87_RS02410 0.31 +1.6
514,863 - ABZR87_RS02410 0.31 +0.3
514,863 - ABZR87_RS02410 0.31 +0.6
514,863 - ABZR87_RS02410 0.31 -0.1
514,880 + ABZR87_RS02410 0.32 -0.4
514,880 + ABZR87_RS02410 0.32 -0.4
514,881 - ABZR87_RS02410 0.32 -0.8
514,937 + ABZR87_RS02410 0.37 +0.4
514,937 + ABZR87_RS02410 0.37 +0.2
514,937 + ABZR87_RS02410 0.37 -2.1
514,937 + ABZR87_RS02410 0.37 +0.5
514,937 + ABZR87_RS02410 0.37 -0.7
514,937 + ABZR87_RS02410 0.37 -0.1
514,937 + ABZR87_RS02410 0.37 -2.0
514,937 + ABZR87_RS02410 0.37 +0.6
514,937 + ABZR87_RS02410 0.37 +0.8
514,938 - ABZR87_RS02410 0.37 +0.2
514,938 - ABZR87_RS02410 0.37 +0.3
514,938 - ABZR87_RS02410 0.37 +0.2
514,938 - ABZR87_RS02410 0.37 -0.1
514,938 - ABZR87_RS02410 0.37 +0.8
514,938 - ABZR87_RS02410 0.37 +0.1
514,938 - ABZR87_RS02410 0.37 -0.5
515,048 + ABZR87_RS02410 0.47 +1.0
515,048 + ABZR87_RS02410 0.47 +0.0
515,048 + ABZR87_RS02410 0.47 -0.0
515,048 + ABZR87_RS02410 0.47 +0.6
515,049 - ABZR87_RS02410 0.47 -0.7
515,049 - ABZR87_RS02410 0.47 +1.8
515,049 - ABZR87_RS02410 0.47 +0.5
515,049 - ABZR87_RS02410 0.47 -0.2
515,049 - ABZR87_RS02410 0.47 -0.4
515,153 + ABZR87_RS02410 0.56 +0.6
515,154 - ABZR87_RS02410 0.56 -1.1
515,154 - ABZR87_RS02410 0.56 -0.0
515,174 + ABZR87_RS02410 0.58 +0.7
515,174 + ABZR87_RS02410 0.58 +0.5
515,174 + ABZR87_RS02410 0.58 -0.7
515,174 + ABZR87_RS02410 0.58 +0.0
515,174 + ABZR87_RS02410 0.58 +0.6
515,174 + ABZR87_RS02410 0.58 -0.6
515,175 - ABZR87_RS02410 0.58 +0.9
515,175 - ABZR87_RS02410 0.58 +1.1
515,175 - ABZR87_RS02410 0.58 -1.7
515,175 - ABZR87_RS02410 0.58 +0.6
515,223 - ABZR87_RS02410 0.62 -0.3
515,223 - ABZR87_RS02410 0.62 +0.3
515,223 - ABZR87_RS02410 0.62 +0.9
515,223 - ABZR87_RS02410 0.62 +0.7
515,243 + ABZR87_RS02410 0.64 +0.1
515,243 + ABZR87_RS02410 0.64 -0.7
515,243 + ABZR87_RS02410 0.64 +0.2
515,244 - ABZR87_RS02410 0.64 -0.9
515,244 - ABZR87_RS02410 0.64 -1.9
515,433 - ABZR87_RS02410 0.81 -0.9
515,459 + ABZR87_RS02410 0.83 -1.8
515,459 + ABZR87_RS02410 0.83 +1.5
515,460 - ABZR87_RS02410 0.83 +0.3
515,460 - ABZR87_RS02410 0.83 +0.4
515,507 + ABZR87_RS02410 0.87 -0.8
515,519 + ABZR87_RS02410 0.88 -1.4
515,522 + ABZR87_RS02410 0.89 +3.0
515,522 + ABZR87_RS02410 0.89 -0.5
515,522 + ABZR87_RS02410 0.89 -0.1
515,522 + ABZR87_RS02410 0.89 -0.3
515,522 + ABZR87_RS02410 0.89 -0.1
515,523 - ABZR87_RS02410 0.89 -2.1
515,523 - ABZR87_RS02410 0.89 +0.9
515,523 - ABZR87_RS02410 0.89 +0.6
515,523 - ABZR87_RS02410 0.89 -0.4
515,523 - ABZR87_RS02410 0.89 -0.4
515,523 - ABZR87_RS02410 0.89 +0.2
515,523 - ABZR87_RS02410 0.89 -1.5
515,523 - ABZR87_RS02410 0.89 +0.5
515,638 + -0.6
515,638 + +1.1
515,638 + +0.8
515,638 + +0.5
515,638 + -1.2
515,639 - -0.6
515,639 - +0.5
515,639 - +0.6
515,667 + -0.0
515,686 - -0.2
515,719 + +0.6
515,720 - -0.2
515,720 - -1.5
515,720 - -1.7
515,732 + -1.6
515,733 - +0.2
515,745 - +2.0
515,992 + ABZR87_RS02415 0.33 +1.0
516,376 + ABZR87_RS02415 0.88 -0.1
516,376 + ABZR87_RS02415 0.88 -0.2
516,376 + ABZR87_RS02415 0.88 +0.4
516,376 + ABZR87_RS02415 0.88 -0.9
516,377 - ABZR87_RS02415 0.88 +1.0
516,377 - ABZR87_RS02415 0.88 +0.4
516,377 - ABZR87_RS02415 0.88 +1.7
516,405 + +0.3
516,405 + +0.6
516,405 + -0.6
516,405 + -0.6
516,406 - +0.5
516,406 - -0.1
516,406 - +0.0
516,406 - -0.6
516,406 - +1.0
516,570 - -1.0
516,602 + +0.7
516,603 - -0.2
516,603 - -0.8
516,686 + ABZR87_RS02420 0.15 +1.0
516,686 + ABZR87_RS02420 0.15 +0.0
516,686 + ABZR87_RS02420 0.15 -0.3
516,686 + ABZR87_RS02420 0.15 +0.3
516,686 + ABZR87_RS02420 0.15 +0.1
516,687 - ABZR87_RS02420 0.15 +0.1
516,687 - ABZR87_RS02420 0.15 -0.5
516,687 - ABZR87_RS02420 0.15 -1.7
516,687 - ABZR87_RS02420 0.15 +0.9
516,731 + ABZR87_RS02420 0.18 +0.3
516,731 + ABZR87_RS02420 0.18 -0.5
516,731 + ABZR87_RS02420 0.18 -0.1
516,731 + ABZR87_RS02420 0.18 +1.1
516,731 + ABZR87_RS02420 0.18 -0.9
516,732 - ABZR87_RS02420 0.18 -0.5
516,732 - ABZR87_RS02420 0.18 +0.9
516,732 - ABZR87_RS02420 0.18 +0.1
516,732 - ABZR87_RS02420 0.18 +0.8
516,732 - ABZR87_RS02420 0.18 -0.5
516,732 - ABZR87_RS02420 0.18 +0.2
516,732 - ABZR87_RS02420 0.18 +0.5
516,734 + ABZR87_RS02420 0.18 +1.3
516,734 + ABZR87_RS02420 0.18 -1.5
516,734 + ABZR87_RS02420 0.18 -0.0
516,791 + ABZR87_RS02420 0.22 -2.3
516,845 + ABZR87_RS02420 0.25 +1.5
516,845 + ABZR87_RS02420 0.25 +1.3
516,845 + ABZR87_RS02420 0.25 +0.6
516,845 + ABZR87_RS02420 0.25 -0.6
516,846 - ABZR87_RS02420 0.25 -1.4
516,846 - ABZR87_RS02420 0.25 -1.4
516,846 - ABZR87_RS02420 0.25 +0.0
516,846 - ABZR87_RS02420 0.25 +0.9
516,846 - ABZR87_RS02420 0.25 -0.9
516,846 - ABZR87_RS02420 0.25 -1.3
516,857 + ABZR87_RS02420 0.26 +0.2
516,857 + ABZR87_RS02420 0.26 -0.1
516,857 + ABZR87_RS02420 0.26 -0.1
516,858 - ABZR87_RS02420 0.26 +0.5
516,858 - ABZR87_RS02420 0.26 +0.5
516,902 + ABZR87_RS02420 0.29 +0.0
516,903 - ABZR87_RS02420 0.29 +0.0
516,903 - ABZR87_RS02420 0.29 +1.4
517,193 + ABZR87_RS02420 0.48 +0.4
517,194 - ABZR87_RS02420 0.48 -0.3
517,274 - ABZR87_RS02420 0.53 +1.2
517,274 - ABZR87_RS02420 0.53 -0.9
517,274 - ABZR87_RS02420 0.53 +0.8
517,274 - ABZR87_RS02420 0.53 -0.1
517,274 - ABZR87_RS02420 0.53 +1.0
517,286 + ABZR87_RS02420 0.54 -0.4
517,287 - ABZR87_RS02420 0.54 +0.3

Or see this region's nucleotide sequence