Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1592

Experiment: Varel_Bryant_medium_Glucose with Anhydrotetracycline 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT1591 and tRNA-Cys are separated by 488 nucleotidestRNA-Cys and BT1592 are separated by 263 nucleotidesBT1592 and BT1593 are separated by 383 nucleotides BT1591: BT1591 - hypothetical protein (NCBI ptt file), at 1,952,372 to 1,955,104 BT1591 BT_t28: tRNA-Cys - tRNA-Cys (RefSeq), at 1,955,593 to 1,955,664 tRNA-Cys BT1592: BT1592 - putative ferrous iron transport protein (NCBI ptt file), at 1,955,928 to 1,958,414 BT1592 BT1593: BT1593 - putative cell-cycle protein (NCBI ptt file), at 1,958,798 to 1,960,078 BT1593 Position (kb) 1955 1956 1957 1958 1959Strain fitness (log2 ratio) -3 -2 -1 0 1at 1954.960 kb on + strandat 1954.964 kb on - strandat 1954.966 kb on - strandat 1955.011 kb on + strandat 1955.011 kb on + strandat 1955.012 kb on - strandat 1955.155 kb on - strandat 1955.231 kb on + strandat 1955.347 kb on - strandat 1955.398 kb on + strandat 1955.398 kb on + strandat 1955.497 kb on - strandat 1955.504 kb on + strandat 1955.784 kb on + strandat 1958.566 kb on - strandat 1958.572 kb on - strandat 1958.606 kb on + strandat 1958.606 kb on + strandat 1958.609 kb on - strandat 1958.615 kb on - strandat 1958.625 kb on + strandat 1958.630 kb on + strandat 1958.650 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant_medium_Glucose with Anhydrotetracycline 0.0125 mM
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1,954,960 + -0.0
1,954,964 - +1.3
1,954,966 - -1.9
1,955,011 + +0.5
1,955,011 + -1.0
1,955,012 - -3.0
1,955,155 - -2.4
1,955,231 + -1.7
1,955,347 - +1.0
1,955,398 + -1.1
1,955,398 + -1.6
1,955,497 - -1.5
1,955,504 + -2.4
1,955,784 + -2.0
1,958,566 - -1.6
1,958,572 - +1.4
1,958,606 + +0.7
1,958,606 + -2.6
1,958,609 - -0.7
1,958,615 - -1.9
1,958,625 + -1.6
1,958,630 + -2.4
1,958,650 + +1.0

Or see this region's nucleotide sequence