Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_606

Experiment: RCH2 defined with Zinc 0.016 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_605 and Pf6N2E2_606 are separated by 43 nucleotidesPf6N2E2_606 and Pf6N2E2_607 are separated by 807 nucleotides Pf6N2E2_605 - FIG002465: BNR repeat protein, at 681,177 to 682,214 _605 Pf6N2E2_606 - FIG005548: transport protein, at 682,258 to 684,633 _606 Pf6N2E2_607 - hypothetical protein, at 685,441 to 690,153 _607 Position (kb) 682 683 684 685Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 681.310 kb on - strand, within Pf6N2E2_605at 681.409 kb on - strand, within Pf6N2E2_605at 681.897 kb on + strand, within Pf6N2E2_605at 681.898 kb on - strand, within Pf6N2E2_605at 682.528 kb on + strand, within Pf6N2E2_606at 682.528 kb on + strand, within Pf6N2E2_606at 682.528 kb on + strand, within Pf6N2E2_606at 682.528 kb on + strand, within Pf6N2E2_606at 682.528 kb on + strand, within Pf6N2E2_606at 682.529 kb on - strand, within Pf6N2E2_606at 682.529 kb on - strand, within Pf6N2E2_606at 682.529 kb on - strand, within Pf6N2E2_606at 682.529 kb on - strand, within Pf6N2E2_606at 682.567 kb on + strand, within Pf6N2E2_606at 682.567 kb on + strandat 682.567 kb on + strand, within Pf6N2E2_606at 682.567 kb on + strand, within Pf6N2E2_606at 682.567 kb on + strand, within Pf6N2E2_606at 682.567 kb on + strand, within Pf6N2E2_606at 682.568 kb on - strand, within Pf6N2E2_606at 682.568 kb on - strand, within Pf6N2E2_606at 682.568 kb on - strand, within Pf6N2E2_606at 682.568 kb on - strand, within Pf6N2E2_606at 682.568 kb on - strand, within Pf6N2E2_606at 682.678 kb on + strand, within Pf6N2E2_606at 682.679 kb on - strand, within Pf6N2E2_606at 682.679 kb on - strand, within Pf6N2E2_606at 682.679 kb on - strand, within Pf6N2E2_606at 682.679 kb on - strand, within Pf6N2E2_606at 682.681 kb on - strand, within Pf6N2E2_606at 683.425 kb on + strand, within Pf6N2E2_606at 683.677 kb on + strand, within Pf6N2E2_606at 683.677 kb on + strand, within Pf6N2E2_606at 683.677 kb on + strand, within Pf6N2E2_606at 683.678 kb on - strand, within Pf6N2E2_606at 683.678 kb on - strand, within Pf6N2E2_606at 683.696 kb on + strand, within Pf6N2E2_606at 683.696 kb on + strand, within Pf6N2E2_606at 683.697 kb on - strand, within Pf6N2E2_606at 683.697 kb on - strand, within Pf6N2E2_606at 683.898 kb on - strand, within Pf6N2E2_606at 683.932 kb on + strand, within Pf6N2E2_606at 683.932 kb on + strand, within Pf6N2E2_606at 683.932 kb on + strand, within Pf6N2E2_606at 683.933 kb on - strand, within Pf6N2E2_606at 683.933 kb on - strand, within Pf6N2E2_606at 683.933 kb on - strand, within Pf6N2E2_606at 684.145 kb on + strand, within Pf6N2E2_606at 684.145 kb on + strand, within Pf6N2E2_606at 684.326 kb on - strand, within Pf6N2E2_606at 684.334 kb on + strand, within Pf6N2E2_606at 684.334 kb on + strand, within Pf6N2E2_606at 684.334 kb on + strand, within Pf6N2E2_606at 684.334 kb on + strand, within Pf6N2E2_606at 684.334 kb on + strand, within Pf6N2E2_606at 684.334 kb on + strand, within Pf6N2E2_606at 684.334 kb on + strand, within Pf6N2E2_606at 684.334 kb on + strand, within Pf6N2E2_606at 684.335 kb on - strand, within Pf6N2E2_606at 684.335 kb on - strand, within Pf6N2E2_606at 684.335 kb on - strand, within Pf6N2E2_606at 684.340 kb on + strand, within Pf6N2E2_606at 684.340 kb on + strand, within Pf6N2E2_606at 684.340 kb on + strand, within Pf6N2E2_606at 684.340 kb on + strand, within Pf6N2E2_606at 684.340 kb on + strand, within Pf6N2E2_606at 684.341 kb on - strand, within Pf6N2E2_606at 684.394 kb on + strand, within Pf6N2E2_606at 684.711 kb on - strandat 684.926 kb on + strandat 684.927 kb on - strandat 684.928 kb on + strandat 684.929 kb on + strandat 684.929 kb on - strandat 684.929 kb on - strandat 684.929 kb on - strandat 684.929 kb on - strandat 685.034 kb on + strandat 685.035 kb on - strandat 685.047 kb on + strandat 685.047 kb on + strandat 685.047 kb on + strandat 685.047 kb on + strandat 685.047 kb on + strandat 685.047 kb on + strandat 685.047 kb on + strandat 685.048 kb on - strandat 685.048 kb on - strandat 685.048 kb on - strandat 685.048 kb on - strandat 685.048 kb on - strandat 685.048 kb on - strandat 685.051 kb on - strandat 685.081 kb on - strandat 685.127 kb on + strandat 685.128 kb on - strandat 685.184 kb on - strandat 685.528 kb on - strandat 685.625 kb on + strandat 685.626 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 defined with Zinc 0.016 mM
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681,310 - Pf6N2E2_605 0.13 -0.1
681,409 - Pf6N2E2_605 0.22 +0.8
681,897 + Pf6N2E2_605 0.69 -3.6
681,898 - Pf6N2E2_605 0.69 -0.5
682,528 + Pf6N2E2_606 0.11 +0.8
682,528 + Pf6N2E2_606 0.11 +1.4
682,528 + Pf6N2E2_606 0.11 +0.6
682,528 + Pf6N2E2_606 0.11 +0.2
682,528 + Pf6N2E2_606 0.11 +0.3
682,529 - Pf6N2E2_606 0.11 +0.8
682,529 - Pf6N2E2_606 0.11 +0.5
682,529 - Pf6N2E2_606 0.11 +1.1
682,529 - Pf6N2E2_606 0.11 +0.1
682,567 + Pf6N2E2_606 0.13 +0.4
682,567 + -0.4
682,567 + Pf6N2E2_606 0.13 -0.2
682,567 + Pf6N2E2_606 0.13 +0.1
682,567 + Pf6N2E2_606 0.13 +0.6
682,567 + Pf6N2E2_606 0.13 +0.5
682,568 - Pf6N2E2_606 0.13 +0.3
682,568 - Pf6N2E2_606 0.13 +0.9
682,568 - Pf6N2E2_606 0.13 +0.4
682,568 - Pf6N2E2_606 0.13 +1.0
682,568 - Pf6N2E2_606 0.13 -0.8
682,678 + Pf6N2E2_606 0.18 +0.6
682,679 - Pf6N2E2_606 0.18 -0.6
682,679 - Pf6N2E2_606 0.18 +0.8
682,679 - Pf6N2E2_606 0.18 +1.5
682,679 - Pf6N2E2_606 0.18 -0.1
682,681 - Pf6N2E2_606 0.18 +0.6
683,425 + Pf6N2E2_606 0.49 +0.1
683,677 + Pf6N2E2_606 0.60 +0.1
683,677 + Pf6N2E2_606 0.60 +1.0
683,677 + Pf6N2E2_606 0.60 +0.2
683,678 - Pf6N2E2_606 0.60 +1.5
683,678 - Pf6N2E2_606 0.60 +1.1
683,696 + Pf6N2E2_606 0.61 +0.4
683,696 + Pf6N2E2_606 0.61 -0.8
683,697 - Pf6N2E2_606 0.61 +0.0
683,697 - Pf6N2E2_606 0.61 -0.4
683,898 - Pf6N2E2_606 0.69 -1.9
683,932 + Pf6N2E2_606 0.70 +1.6
683,932 + Pf6N2E2_606 0.70 -0.4
683,932 + Pf6N2E2_606 0.70 +0.6
683,933 - Pf6N2E2_606 0.70 +0.1
683,933 - Pf6N2E2_606 0.70 -0.8
683,933 - Pf6N2E2_606 0.70 -0.3
684,145 + Pf6N2E2_606 0.79 +0.4
684,145 + Pf6N2E2_606 0.79 +0.7
684,326 - Pf6N2E2_606 0.87 +1.1
684,334 + Pf6N2E2_606 0.87 -0.3
684,334 + Pf6N2E2_606 0.87 +1.1
684,334 + Pf6N2E2_606 0.87 +0.6
684,334 + Pf6N2E2_606 0.87 -0.6
684,334 + Pf6N2E2_606 0.87 +0.8
684,334 + Pf6N2E2_606 0.87 +0.0
684,334 + Pf6N2E2_606 0.87 -0.5
684,334 + Pf6N2E2_606 0.87 +0.0
684,335 - Pf6N2E2_606 0.87 -0.3
684,335 - Pf6N2E2_606 0.87 +0.1
684,335 - Pf6N2E2_606 0.87 +0.4
684,340 + Pf6N2E2_606 0.88 +0.5
684,340 + Pf6N2E2_606 0.88 +0.3
684,340 + Pf6N2E2_606 0.88 +2.1
684,340 + Pf6N2E2_606 0.88 +0.7
684,340 + Pf6N2E2_606 0.88 -1.0
684,341 - Pf6N2E2_606 0.88 +0.8
684,394 + Pf6N2E2_606 0.90 -0.5
684,711 - -0.6
684,926 + +0.0
684,927 - +0.0
684,928 + +0.2
684,929 + +0.0
684,929 - +0.4
684,929 - +0.8
684,929 - -0.4
684,929 - +0.6
685,034 + +0.3
685,035 - +0.1
685,047 + -0.3
685,047 + -0.0
685,047 + -0.5
685,047 + -0.2
685,047 + +0.2
685,047 + +0.4
685,047 + -0.2
685,048 - +0.3
685,048 - -2.0
685,048 - -0.9
685,048 - -0.9
685,048 - -0.2
685,048 - -0.5
685,051 - -0.6
685,081 - -0.5
685,127 + +0.0
685,128 - +1.0
685,184 - +0.9
685,528 - -0.0
685,625 + +0.2
685,626 - -0.7

Or see this region's nucleotide sequence