Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_6044

Experiment: RCH2 defined with Zinc 0.016 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_6043 and Pf6N2E2_6044 are separated by 499 nucleotidesPf6N2E2_6044 and Pf6N2E2_6045 are separated by 156 nucleotidesPf6N2E2_6045 and Pf6N2E2_6046 are separated by 373 nucleotides Pf6N2E2_6043 - hypothetical protein, at 6,862,784 to 6,863,062 _6043 Pf6N2E2_6044 - Sensor histidine kinase/response regulator, at 6,863,562 to 6,865,652 _6044 Pf6N2E2_6045 - hypothetical protein, at 6,865,809 to 6,865,994 _6045 Pf6N2E2_6046 - hypothetical protein, at 6,866,368 to 6,866,778 _6046 Position (kb) 6863 6864 6865 6866Strain fitness (log2 ratio) -2 -1 0 1 2 3at 6862.577 kb on + strandat 6862.644 kb on + strandat 6862.645 kb on - strandat 6862.785 kb on + strandat 6863.062 kb on + strandat 6863.063 kb on - strandat 6863.063 kb on - strandat 6863.063 kb on - strandat 6863.063 kb on - strandat 6863.066 kb on + strandat 6863.066 kb on + strandat 6863.067 kb on - strandat 6863.067 kb on - strandat 6863.136 kb on + strandat 6863.137 kb on - strandat 6863.195 kb on - strandat 6863.199 kb on - strandat 6863.232 kb on + strandat 6863.232 kb on + strandat 6863.233 kb on - strandat 6863.233 kb on - strandat 6863.239 kb on + strandat 6863.240 kb on - strandat 6863.240 kb on - strandat 6863.240 kb on - strandat 6863.240 kb on - strandat 6863.240 kb on - strandat 6863.249 kb on + strandat 6863.262 kb on + strandat 6863.263 kb on - strandat 6863.289 kb on + strandat 6863.289 kb on + strandat 6863.303 kb on - strandat 6863.307 kb on + strandat 6863.308 kb on - strandat 6863.390 kb on + strandat 6863.413 kb on + strandat 6863.413 kb on + strandat 6863.413 kb on + strandat 6863.414 kb on - strandat 6863.643 kb on + strandat 6863.643 kb on + strandat 6863.643 kb on + strandat 6863.644 kb on - strandat 6863.644 kb on - strandat 6863.644 kb on - strandat 6863.777 kb on + strand, within Pf6N2E2_6044at 6863.778 kb on - strand, within Pf6N2E2_6044at 6863.779 kb on + strand, within Pf6N2E2_6044at 6863.829 kb on + strand, within Pf6N2E2_6044at 6863.829 kb on + strand, within Pf6N2E2_6044at 6863.829 kb on + strand, within Pf6N2E2_6044at 6863.829 kb on + strand, within Pf6N2E2_6044at 6863.829 kb on + strand, within Pf6N2E2_6044at 6863.830 kb on - strand, within Pf6N2E2_6044at 6863.830 kb on - strand, within Pf6N2E2_6044at 6863.845 kb on - strand, within Pf6N2E2_6044at 6863.845 kb on - strand, within Pf6N2E2_6044at 6864.048 kb on + strand, within Pf6N2E2_6044at 6864.120 kb on - strand, within Pf6N2E2_6044at 6864.167 kb on + strand, within Pf6N2E2_6044at 6864.167 kb on + strand, within Pf6N2E2_6044at 6864.167 kb on + strand, within Pf6N2E2_6044at 6864.168 kb on - strand, within Pf6N2E2_6044at 6864.324 kb on - strand, within Pf6N2E2_6044at 6864.660 kb on + strand, within Pf6N2E2_6044at 6864.660 kb on + strand, within Pf6N2E2_6044at 6864.660 kb on + strand, within Pf6N2E2_6044at 6864.660 kb on + strand, within Pf6N2E2_6044at 6864.660 kb on + strand, within Pf6N2E2_6044at 6864.661 kb on - strand, within Pf6N2E2_6044at 6864.661 kb on - strand, within Pf6N2E2_6044at 6864.661 kb on - strand, within Pf6N2E2_6044at 6864.661 kb on - strand, within Pf6N2E2_6044at 6864.661 kb on - strand, within Pf6N2E2_6044at 6864.661 kb on - strand, within Pf6N2E2_6044at 6864.661 kb on - strand, within Pf6N2E2_6044at 6864.661 kb on - strand, within Pf6N2E2_6044at 6864.661 kb on - strand, within Pf6N2E2_6044at 6864.663 kb on - strand, within Pf6N2E2_6044at 6864.663 kb on - strand, within Pf6N2E2_6044at 6864.663 kb on - strand, within Pf6N2E2_6044at 6864.663 kb on - strand, within Pf6N2E2_6044at 6864.855 kb on + strand, within Pf6N2E2_6044at 6864.855 kb on + strand, within Pf6N2E2_6044at 6864.856 kb on - strand, within Pf6N2E2_6044at 6864.902 kb on - strand, within Pf6N2E2_6044at 6864.902 kb on - strand, within Pf6N2E2_6044at 6864.902 kb on - strand, within Pf6N2E2_6044at 6865.212 kb on + strand, within Pf6N2E2_6044at 6865.213 kb on - strand, within Pf6N2E2_6044at 6865.213 kb on - strand, within Pf6N2E2_6044at 6865.453 kb on + strandat 6865.453 kb on + strandat 6865.453 kb on + strandat 6865.453 kb on + strandat 6865.453 kb on + strandat 6865.453 kb on + strandat 6865.453 kb on + strandat 6865.454 kb on - strandat 6865.625 kb on - strandat 6865.636 kb on + strandat 6865.821 kb on + strandat 6865.884 kb on + strand, within Pf6N2E2_6045at 6866.119 kb on - strandat 6866.119 kb on - strandat 6866.127 kb on - strandat 6866.181 kb on + strandat 6866.181 kb on + strandat 6866.181 kb on + strandat 6866.181 kb on + strandat 6866.181 kb on + strandat 6866.182 kb on - strandat 6866.182 kb on - strandat 6866.182 kb on - strandat 6866.185 kb on + strandat 6866.185 kb on + strandat 6866.185 kb on + strandat 6866.185 kb on + strandat 6866.185 kb on + strandat 6866.185 kb on + strandat 6866.186 kb on - strandat 6866.186 kb on - strandat 6866.186 kb on - strandat 6866.186 kb on - strandat 6866.186 kb on - strandat 6866.186 kb on - strandat 6866.186 kb on - strandat 6866.186 kb on - strandat 6866.213 kb on + strandat 6866.213 kb on + strandat 6866.214 kb on - strandat 6866.254 kb on - strandat 6866.306 kb on + strandat 6866.364 kb on + strandat 6866.365 kb on - strandat 6866.365 kb on - strandat 6866.393 kb on + strandat 6866.405 kb on + strandat 6866.405 kb on + strandat 6866.406 kb on - strandat 6866.406 kb on - strandat 6866.406 kb on - strandat 6866.406 kb on - strandat 6866.406 kb on - strandat 6866.471 kb on + strand, within Pf6N2E2_6046at 6866.471 kb on + strand, within Pf6N2E2_6046at 6866.471 kb on + strand, within Pf6N2E2_6046at 6866.472 kb on - strand, within Pf6N2E2_6046at 6866.472 kb on - strand, within Pf6N2E2_6046at 6866.472 kb on - strand, within Pf6N2E2_6046

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 defined with Zinc 0.016 mM
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6,862,577 + -0.5
6,862,644 + +0.8
6,862,645 - +0.6
6,862,785 + -0.7
6,863,062 + +0.1
6,863,063 - -1.5
6,863,063 - +1.6
6,863,063 - +0.1
6,863,063 - -1.3
6,863,066 + -1.2
6,863,066 + +0.1
6,863,067 - -0.6
6,863,067 - +1.6
6,863,136 + -0.6
6,863,137 - -0.4
6,863,195 - -0.1
6,863,199 - -1.1
6,863,232 + -0.4
6,863,232 + +1.2
6,863,233 - +1.1
6,863,233 - +0.0
6,863,239 + -0.1
6,863,240 - +0.7
6,863,240 - -0.1
6,863,240 - +0.7
6,863,240 - -1.7
6,863,240 - -0.8
6,863,249 + +1.5
6,863,262 + +0.1
6,863,263 - -0.2
6,863,289 + -1.1
6,863,289 + +1.6
6,863,303 - -0.5
6,863,307 + -0.4
6,863,308 - +0.1
6,863,390 + +0.1
6,863,413 + +0.6
6,863,413 + -0.1
6,863,413 + -1.3
6,863,414 - -0.3
6,863,643 + -0.3
6,863,643 + +0.5
6,863,643 + +0.7
6,863,644 - -0.1
6,863,644 - +0.1
6,863,644 - -0.9
6,863,777 + Pf6N2E2_6044 0.10 -1.1
6,863,778 - Pf6N2E2_6044 0.10 +0.7
6,863,779 + Pf6N2E2_6044 0.10 -0.1
6,863,829 + Pf6N2E2_6044 0.13 +0.1
6,863,829 + Pf6N2E2_6044 0.13 +0.3
6,863,829 + Pf6N2E2_6044 0.13 +0.4
6,863,829 + Pf6N2E2_6044 0.13 -0.0
6,863,829 + Pf6N2E2_6044 0.13 -1.5
6,863,830 - Pf6N2E2_6044 0.13 +0.8
6,863,830 - Pf6N2E2_6044 0.13 +0.7
6,863,845 - Pf6N2E2_6044 0.14 -1.0
6,863,845 - Pf6N2E2_6044 0.14 +2.2
6,864,048 + Pf6N2E2_6044 0.23 -0.1
6,864,120 - Pf6N2E2_6044 0.27 +0.5
6,864,167 + Pf6N2E2_6044 0.29 -0.3
6,864,167 + Pf6N2E2_6044 0.29 +1.0
6,864,167 + Pf6N2E2_6044 0.29 +1.0
6,864,168 - Pf6N2E2_6044 0.29 +3.2
6,864,324 - Pf6N2E2_6044 0.36 +0.5
6,864,660 + Pf6N2E2_6044 0.53 +0.1
6,864,660 + Pf6N2E2_6044 0.53 -0.8
6,864,660 + Pf6N2E2_6044 0.53 -0.6
6,864,660 + Pf6N2E2_6044 0.53 +0.2
6,864,660 + Pf6N2E2_6044 0.53 +0.2
6,864,661 - Pf6N2E2_6044 0.53 +0.4
6,864,661 - Pf6N2E2_6044 0.53 -0.2
6,864,661 - Pf6N2E2_6044 0.53 -0.1
6,864,661 - Pf6N2E2_6044 0.53 +0.3
6,864,661 - Pf6N2E2_6044 0.53 -0.2
6,864,661 - Pf6N2E2_6044 0.53 -1.6
6,864,661 - Pf6N2E2_6044 0.53 -0.3
6,864,661 - Pf6N2E2_6044 0.53 +0.7
6,864,661 - Pf6N2E2_6044 0.53 +0.4
6,864,663 - Pf6N2E2_6044 0.53 -0.0
6,864,663 - Pf6N2E2_6044 0.53 +0.1
6,864,663 - Pf6N2E2_6044 0.53 +0.9
6,864,663 - Pf6N2E2_6044 0.53 -0.8
6,864,855 + Pf6N2E2_6044 0.62 +0.4
6,864,855 + Pf6N2E2_6044 0.62 +1.6
6,864,856 - Pf6N2E2_6044 0.62 -1.1
6,864,902 - Pf6N2E2_6044 0.64 +0.3
6,864,902 - Pf6N2E2_6044 0.64 -0.9
6,864,902 - Pf6N2E2_6044 0.64 -0.7
6,865,212 + Pf6N2E2_6044 0.79 -1.1
6,865,213 - Pf6N2E2_6044 0.79 +0.4
6,865,213 - Pf6N2E2_6044 0.79 -1.6
6,865,453 + -0.2
6,865,453 + +0.4
6,865,453 + +1.0
6,865,453 + +0.2
6,865,453 + -0.1
6,865,453 + -0.8
6,865,453 + +0.2
6,865,454 - -1.1
6,865,625 - +0.4
6,865,636 + +0.2
6,865,821 + -0.2
6,865,884 + Pf6N2E2_6045 0.40 -0.7
6,866,119 - -0.2
6,866,119 - -0.5
6,866,127 - -0.7
6,866,181 + +0.5
6,866,181 + +0.1
6,866,181 + -0.8
6,866,181 + +0.7
6,866,181 + -0.1
6,866,182 - -0.0
6,866,182 - -0.2
6,866,182 - +0.4
6,866,185 + +0.4
6,866,185 + -1.2
6,866,185 + -2.1
6,866,185 + +0.1
6,866,185 + +0.1
6,866,185 + +0.7
6,866,186 - -0.4
6,866,186 - -0.1
6,866,186 - -1.0
6,866,186 - +0.1
6,866,186 - -1.6
6,866,186 - +0.1
6,866,186 - +1.9
6,866,186 - +0.0
6,866,213 + -1.2
6,866,213 + +0.8
6,866,214 - +0.5
6,866,254 - +1.0
6,866,306 + +1.0
6,866,364 + -0.1
6,866,365 - -0.7
6,866,365 - +0.1
6,866,393 + -0.6
6,866,405 + +0.4
6,866,405 + +0.1
6,866,406 - -0.7
6,866,406 - -0.1
6,866,406 - +0.5
6,866,406 - +0.3
6,866,406 - -0.2
6,866,471 + Pf6N2E2_6046 0.25 -0.6
6,866,471 + Pf6N2E2_6046 0.25 -0.7
6,866,471 + Pf6N2E2_6046 0.25 -0.1
6,866,472 - Pf6N2E2_6046 0.25 -0.5
6,866,472 - Pf6N2E2_6046 0.25 -0.5
6,866,472 - Pf6N2E2_6046 0.25 +0.7

Or see this region's nucleotide sequence