Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_4739

Experiment: RCH2 defined with Zinc 0.016 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_4738 and Pf6N2E2_4739 are separated by 171 nucleotidesPf6N2E2_4739 and Pf6N2E2_4740 are separated by 54 nucleotides Pf6N2E2_4738 - Two-component response regulator CreC, at 5,474,578 to 5,475,996 _4738 Pf6N2E2_4739 - Esterase/lipase, at 5,476,168 to 5,477,142 _4739 Pf6N2E2_4740 - Inner membrane protein CreD, at 5,477,197 to 5,478,570 _4740 Position (kb) 5476 5477 5478Strain fitness (log2 ratio) -2 -1 0 1 2at 5475.223 kb on + strand, within Pf6N2E2_4738at 5475.224 kb on - strand, within Pf6N2E2_4738at 5475.341 kb on - strand, within Pf6N2E2_4738at 5475.341 kb on - strand, within Pf6N2E2_4738at 5475.352 kb on + strand, within Pf6N2E2_4738at 5475.430 kb on - strand, within Pf6N2E2_4738at 5475.630 kb on - strand, within Pf6N2E2_4738at 5475.630 kb on - strand, within Pf6N2E2_4738at 5475.645 kb on + strand, within Pf6N2E2_4738at 5475.645 kb on + strand, within Pf6N2E2_4738at 5475.645 kb on + strand, within Pf6N2E2_4738at 5475.645 kb on + strand, within Pf6N2E2_4738at 5475.646 kb on - strand, within Pf6N2E2_4738at 5475.646 kb on - strand, within Pf6N2E2_4738at 5475.646 kb on - strand, within Pf6N2E2_4738at 5475.646 kb on - strand, within Pf6N2E2_4738at 5475.729 kb on + strand, within Pf6N2E2_4738at 5475.824 kb on - strand, within Pf6N2E2_4738at 5475.853 kb on + strand, within Pf6N2E2_4738at 5476.052 kb on - strandat 5476.052 kb on - strandat 5476.078 kb on + strandat 5476.078 kb on + strandat 5476.078 kb on + strandat 5476.078 kb on + strandat 5476.078 kb on + strandat 5476.079 kb on - strandat 5476.082 kb on + strandat 5476.082 kb on + strandat 5476.082 kb on + strandat 5476.082 kb on + strandat 5476.082 kb on + strandat 5476.083 kb on - strandat 5476.137 kb on + strandat 5476.138 kb on - strandat 5476.172 kb on + strandat 5476.172 kb on + strandat 5476.172 kb on + strandat 5476.172 kb on + strandat 5476.173 kb on - strandat 5476.173 kb on - strandat 5476.173 kb on - strandat 5476.243 kb on + strandat 5476.243 kb on + strandat 5476.243 kb on + strandat 5476.244 kb on - strandat 5476.324 kb on + strand, within Pf6N2E2_4739at 5476.324 kb on + strand, within Pf6N2E2_4739at 5476.324 kb on + strand, within Pf6N2E2_4739at 5476.324 kb on + strand, within Pf6N2E2_4739at 5476.324 kb on + strand, within Pf6N2E2_4739at 5476.325 kb on - strand, within Pf6N2E2_4739at 5476.363 kb on + strand, within Pf6N2E2_4739at 5476.364 kb on - strand, within Pf6N2E2_4739at 5476.416 kb on + strand, within Pf6N2E2_4739at 5476.417 kb on - strand, within Pf6N2E2_4739at 5476.417 kb on - strand, within Pf6N2E2_4739at 5476.417 kb on - strand, within Pf6N2E2_4739at 5476.420 kb on + strand, within Pf6N2E2_4739at 5476.420 kb on + strand, within Pf6N2E2_4739at 5476.420 kb on + strand, within Pf6N2E2_4739at 5476.420 kb on + strand, within Pf6N2E2_4739at 5476.420 kb on + strand, within Pf6N2E2_4739at 5476.420 kb on + strand, within Pf6N2E2_4739at 5476.420 kb on + strand, within Pf6N2E2_4739at 5476.420 kb on + strand, within Pf6N2E2_4739at 5476.421 kb on - strand, within Pf6N2E2_4739at 5476.421 kb on - strand, within Pf6N2E2_4739at 5476.421 kb on - strand, within Pf6N2E2_4739at 5476.421 kb on - strand, within Pf6N2E2_4739at 5476.421 kb on - strand, within Pf6N2E2_4739at 5476.421 kb on - strand, within Pf6N2E2_4739at 5476.597 kb on - strand, within Pf6N2E2_4739at 5476.597 kb on - strand, within Pf6N2E2_4739at 5476.682 kb on - strand, within Pf6N2E2_4739at 5476.781 kb on - strand, within Pf6N2E2_4739at 5476.876 kb on - strand, within Pf6N2E2_4739at 5476.885 kb on + strand, within Pf6N2E2_4739at 5476.885 kb on + strand, within Pf6N2E2_4739at 5476.885 kb on + strand, within Pf6N2E2_4739at 5476.890 kb on + strand, within Pf6N2E2_4739at 5476.890 kb on + strand, within Pf6N2E2_4739at 5476.890 kb on + strand, within Pf6N2E2_4739at 5476.891 kb on - strand, within Pf6N2E2_4739at 5476.891 kb on - strand, within Pf6N2E2_4739at 5476.891 kb on - strand, within Pf6N2E2_4739at 5476.891 kb on - strand, within Pf6N2E2_4739at 5476.980 kb on + strand, within Pf6N2E2_4739at 5476.980 kb on + strand, within Pf6N2E2_4739at 5476.980 kb on + strand, within Pf6N2E2_4739at 5476.980 kb on + strand, within Pf6N2E2_4739at 5476.980 kb on + strand, within Pf6N2E2_4739at 5476.980 kb on + strand, within Pf6N2E2_4739at 5476.980 kb on + strand, within Pf6N2E2_4739at 5476.980 kb on + strand, within Pf6N2E2_4739at 5476.980 kb on + strand, within Pf6N2E2_4739at 5476.980 kb on + strand, within Pf6N2E2_4739at 5476.980 kb on + strand, within Pf6N2E2_4739at 5476.980 kb on + strand, within Pf6N2E2_4739at 5476.980 kb on + strand, within Pf6N2E2_4739at 5476.980 kb on + strand, within Pf6N2E2_4739at 5476.980 kb on + strand, within Pf6N2E2_4739at 5476.981 kb on - strand, within Pf6N2E2_4739at 5476.981 kb on - strand, within Pf6N2E2_4739at 5476.981 kb on - strand, within Pf6N2E2_4739at 5476.981 kb on - strand, within Pf6N2E2_4739at 5476.981 kb on - strand, within Pf6N2E2_4739at 5477.217 kb on - strandat 5477.237 kb on + strandat 5477.238 kb on - strandat 5477.344 kb on + strand, within Pf6N2E2_4740at 5477.345 kb on - strand, within Pf6N2E2_4740at 5477.345 kb on - strand, within Pf6N2E2_4740at 5477.409 kb on + strand, within Pf6N2E2_4740at 5477.410 kb on - strand, within Pf6N2E2_4740at 5477.467 kb on + strand, within Pf6N2E2_4740at 5477.468 kb on - strand, within Pf6N2E2_4740at 5477.468 kb on - strand, within Pf6N2E2_4740at 5477.533 kb on + strand, within Pf6N2E2_4740at 5477.533 kb on + strand, within Pf6N2E2_4740at 5477.533 kb on + strand, within Pf6N2E2_4740at 5477.534 kb on - strand, within Pf6N2E2_4740at 5477.534 kb on - strand, within Pf6N2E2_4740at 5477.534 kb on - strand, within Pf6N2E2_4740at 5477.534 kb on - strand, within Pf6N2E2_4740at 5477.534 kb on - strand, within Pf6N2E2_4740at 5477.534 kb on - strand, within Pf6N2E2_4740at 5477.546 kb on + strand, within Pf6N2E2_4740at 5477.547 kb on - strand, within Pf6N2E2_4740at 5477.644 kb on + strand, within Pf6N2E2_4740at 5477.644 kb on + strand, within Pf6N2E2_4740at 5477.645 kb on - strand, within Pf6N2E2_4740at 5477.645 kb on - strand, within Pf6N2E2_4740at 5477.926 kb on + strand, within Pf6N2E2_4740at 5477.926 kb on + strand, within Pf6N2E2_4740at 5477.926 kb on + strand, within Pf6N2E2_4740at 5477.926 kb on + strand, within Pf6N2E2_4740at 5477.927 kb on - strand, within Pf6N2E2_4740at 5477.927 kb on - strand, within Pf6N2E2_4740at 5477.927 kb on - strand, within Pf6N2E2_4740at 5477.927 kb on - strand, within Pf6N2E2_4740at 5477.927 kb on - strand, within Pf6N2E2_4740at 5477.927 kb on - strand, within Pf6N2E2_4740at 5478.036 kb on + strand, within Pf6N2E2_4740at 5478.037 kb on - strand, within Pf6N2E2_4740at 5478.037 kb on - strand, within Pf6N2E2_4740at 5478.097 kb on + strand, within Pf6N2E2_4740at 5478.124 kb on + strand, within Pf6N2E2_4740at 5478.124 kb on + strand, within Pf6N2E2_4740at 5478.124 kb on + strand, within Pf6N2E2_4740at 5478.124 kb on + strand, within Pf6N2E2_4740at 5478.124 kb on + strand, within Pf6N2E2_4740at 5478.124 kb on + strand, within Pf6N2E2_4740at 5478.125 kb on - strand, within Pf6N2E2_4740at 5478.125 kb on - strand, within Pf6N2E2_4740at 5478.125 kb on - strand, within Pf6N2E2_4740at 5478.125 kb on - strand, within Pf6N2E2_4740at 5478.125 kb on - strand, within Pf6N2E2_4740at 5478.125 kb on - strand, within Pf6N2E2_4740at 5478.125 kb on - strand, within Pf6N2E2_4740at 5478.125 kb on - strand, within Pf6N2E2_4740

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Per-strain Table

Position Strand Gene LocusTag Fraction RCH2 defined with Zinc 0.016 mM
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5,475,223 + Pf6N2E2_4738 0.45 -0.8
5,475,224 - Pf6N2E2_4738 0.46 +0.2
5,475,341 - Pf6N2E2_4738 0.54 +0.0
5,475,341 - Pf6N2E2_4738 0.54 +0.3
5,475,352 + Pf6N2E2_4738 0.55 +2.3
5,475,430 - Pf6N2E2_4738 0.60 -0.0
5,475,630 - Pf6N2E2_4738 0.74 -1.2
5,475,630 - Pf6N2E2_4738 0.74 -0.1
5,475,645 + Pf6N2E2_4738 0.75 -0.2
5,475,645 + Pf6N2E2_4738 0.75 -0.1
5,475,645 + Pf6N2E2_4738 0.75 +0.1
5,475,645 + Pf6N2E2_4738 0.75 +0.2
5,475,646 - Pf6N2E2_4738 0.75 -0.7
5,475,646 - Pf6N2E2_4738 0.75 +0.5
5,475,646 - Pf6N2E2_4738 0.75 -0.4
5,475,646 - Pf6N2E2_4738 0.75 -0.5
5,475,729 + Pf6N2E2_4738 0.81 -0.2
5,475,824 - Pf6N2E2_4738 0.88 +0.1
5,475,853 + Pf6N2E2_4738 0.90 -0.7
5,476,052 - +0.9
5,476,052 - +0.5
5,476,078 + -0.2
5,476,078 + +1.0
5,476,078 + -2.1
5,476,078 + -0.9
5,476,078 + -0.4
5,476,079 - -0.6
5,476,082 + +1.3
5,476,082 + -0.2
5,476,082 + -0.3
5,476,082 + +0.4
5,476,082 + +0.3
5,476,083 - +0.2
5,476,137 + -1.2
5,476,138 - +0.2
5,476,172 + -0.3
5,476,172 + -0.2
5,476,172 + -0.1
5,476,172 + -0.4
5,476,173 - +0.4
5,476,173 - -0.7
5,476,173 - -0.6
5,476,243 + +0.8
5,476,243 + +0.9
5,476,243 + -0.2
5,476,244 - -0.3
5,476,324 + Pf6N2E2_4739 0.16 +0.7
5,476,324 + Pf6N2E2_4739 0.16 -0.0
5,476,324 + Pf6N2E2_4739 0.16 +0.3
5,476,324 + Pf6N2E2_4739 0.16 -0.7
5,476,324 + Pf6N2E2_4739 0.16 -0.7
5,476,325 - Pf6N2E2_4739 0.16 +0.1
5,476,363 + Pf6N2E2_4739 0.20 -0.5
5,476,364 - Pf6N2E2_4739 0.20 -0.4
5,476,416 + Pf6N2E2_4739 0.25 -0.8
5,476,417 - Pf6N2E2_4739 0.26 +0.7
5,476,417 - Pf6N2E2_4739 0.26 +0.4
5,476,417 - Pf6N2E2_4739 0.26 +1.1
5,476,420 + Pf6N2E2_4739 0.26 -0.9
5,476,420 + Pf6N2E2_4739 0.26 +0.4
5,476,420 + Pf6N2E2_4739 0.26 +0.5
5,476,420 + Pf6N2E2_4739 0.26 -0.2
5,476,420 + Pf6N2E2_4739 0.26 +0.7
5,476,420 + Pf6N2E2_4739 0.26 +1.0
5,476,420 + Pf6N2E2_4739 0.26 +1.7
5,476,420 + Pf6N2E2_4739 0.26 +0.3
5,476,421 - Pf6N2E2_4739 0.26 +0.3
5,476,421 - Pf6N2E2_4739 0.26 +0.3
5,476,421 - Pf6N2E2_4739 0.26 +0.9
5,476,421 - Pf6N2E2_4739 0.26 +0.7
5,476,421 - Pf6N2E2_4739 0.26 +0.1
5,476,421 - Pf6N2E2_4739 0.26 -1.2
5,476,597 - Pf6N2E2_4739 0.44 -0.3
5,476,597 - Pf6N2E2_4739 0.44 -0.3
5,476,682 - Pf6N2E2_4739 0.53 +0.2
5,476,781 - Pf6N2E2_4739 0.63 +0.4
5,476,876 - Pf6N2E2_4739 0.73 -0.1
5,476,885 + Pf6N2E2_4739 0.74 +0.2
5,476,885 + Pf6N2E2_4739 0.74 +0.3
5,476,885 + Pf6N2E2_4739 0.74 -0.3
5,476,890 + Pf6N2E2_4739 0.74 -0.1
5,476,890 + Pf6N2E2_4739 0.74 +0.1
5,476,890 + Pf6N2E2_4739 0.74 +0.9
5,476,891 - Pf6N2E2_4739 0.74 +0.8
5,476,891 - Pf6N2E2_4739 0.74 +1.3
5,476,891 - Pf6N2E2_4739 0.74 +0.1
5,476,891 - Pf6N2E2_4739 0.74 -0.7
5,476,980 + Pf6N2E2_4739 0.83 +0.2
5,476,980 + Pf6N2E2_4739 0.83 +0.2
5,476,980 + Pf6N2E2_4739 0.83 -0.4
5,476,980 + Pf6N2E2_4739 0.83 +1.3
5,476,980 + Pf6N2E2_4739 0.83 -1.4
5,476,980 + Pf6N2E2_4739 0.83 +1.0
5,476,980 + Pf6N2E2_4739 0.83 +1.2
5,476,980 + Pf6N2E2_4739 0.83 -0.2
5,476,980 + Pf6N2E2_4739 0.83 -0.1
5,476,980 + Pf6N2E2_4739 0.83 -0.4
5,476,980 + Pf6N2E2_4739 0.83 +0.7
5,476,980 + Pf6N2E2_4739 0.83 +0.6
5,476,980 + Pf6N2E2_4739 0.83 +0.1
5,476,980 + Pf6N2E2_4739 0.83 +0.8
5,476,980 + Pf6N2E2_4739 0.83 +1.6
5,476,981 - Pf6N2E2_4739 0.83 -0.5
5,476,981 - Pf6N2E2_4739 0.83 +0.4
5,476,981 - Pf6N2E2_4739 0.83 +1.3
5,476,981 - Pf6N2E2_4739 0.83 +0.5
5,476,981 - Pf6N2E2_4739 0.83 -1.5
5,477,217 - +0.1
5,477,237 + -0.5
5,477,238 - -1.0
5,477,344 + Pf6N2E2_4740 0.11 -1.6
5,477,345 - Pf6N2E2_4740 0.11 +0.6
5,477,345 - Pf6N2E2_4740 0.11 -0.5
5,477,409 + Pf6N2E2_4740 0.15 -0.5
5,477,410 - Pf6N2E2_4740 0.16 +0.4
5,477,467 + Pf6N2E2_4740 0.20 -0.5
5,477,468 - Pf6N2E2_4740 0.20 -1.3
5,477,468 - Pf6N2E2_4740 0.20 +0.2
5,477,533 + Pf6N2E2_4740 0.24 -0.8
5,477,533 + Pf6N2E2_4740 0.24 -0.7
5,477,533 + Pf6N2E2_4740 0.24 -0.4
5,477,534 - Pf6N2E2_4740 0.25 +0.2
5,477,534 - Pf6N2E2_4740 0.25 +0.4
5,477,534 - Pf6N2E2_4740 0.25 +0.2
5,477,534 - Pf6N2E2_4740 0.25 -0.1
5,477,534 - Pf6N2E2_4740 0.25 +0.2
5,477,534 - Pf6N2E2_4740 0.25 -0.9
5,477,546 + Pf6N2E2_4740 0.25 -0.7
5,477,547 - Pf6N2E2_4740 0.25 +0.5
5,477,644 + Pf6N2E2_4740 0.33 -0.3
5,477,644 + Pf6N2E2_4740 0.33 +0.5
5,477,645 - Pf6N2E2_4740 0.33 -1.0
5,477,645 - Pf6N2E2_4740 0.33 +0.0
5,477,926 + Pf6N2E2_4740 0.53 -0.7
5,477,926 + Pf6N2E2_4740 0.53 -1.0
5,477,926 + Pf6N2E2_4740 0.53 -1.2
5,477,926 + Pf6N2E2_4740 0.53 +0.3
5,477,927 - Pf6N2E2_4740 0.53 +0.5
5,477,927 - Pf6N2E2_4740 0.53 -1.0
5,477,927 - Pf6N2E2_4740 0.53 -0.3
5,477,927 - Pf6N2E2_4740 0.53 -0.2
5,477,927 - Pf6N2E2_4740 0.53 -0.4
5,477,927 - Pf6N2E2_4740 0.53 -0.5
5,478,036 + Pf6N2E2_4740 0.61 +0.3
5,478,037 - Pf6N2E2_4740 0.61 +0.6
5,478,037 - Pf6N2E2_4740 0.61 +0.4
5,478,097 + Pf6N2E2_4740 0.66 +0.2
5,478,124 + Pf6N2E2_4740 0.67 +0.2
5,478,124 + Pf6N2E2_4740 0.67 +0.0
5,478,124 + Pf6N2E2_4740 0.67 +0.8
5,478,124 + Pf6N2E2_4740 0.67 +1.1
5,478,124 + Pf6N2E2_4740 0.67 -0.4
5,478,124 + Pf6N2E2_4740 0.67 +0.6
5,478,125 - Pf6N2E2_4740 0.68 -0.1
5,478,125 - Pf6N2E2_4740 0.68 -0.6
5,478,125 - Pf6N2E2_4740 0.68 +0.9
5,478,125 - Pf6N2E2_4740 0.68 +0.6
5,478,125 - Pf6N2E2_4740 0.68 +0.9
5,478,125 - Pf6N2E2_4740 0.68 -0.3
5,478,125 - Pf6N2E2_4740 0.68 +0.1
5,478,125 - Pf6N2E2_4740 0.68 -0.3

Or see this region's nucleotide sequence