Experiment: RCH2 defined with Zinc 0.016 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3951 and Pf6N2E2_3952 are separated by 140 nucleotides Pf6N2E2_3952 and Pf6N2E2_3953 are separated by 122 nucleotides
Pf6N2E2_3951 - Efflux transporter, RND family, MFP subunit, at 4,591,745 to 4,592,848
_3951
Pf6N2E2_3952 - putative RecF protein, at 4,592,989 to 4,594,149
_3952
Pf6N2E2_3953 - Methionine ABC transporter substrate-binding protein, at 4,594,272 to 4,595,054
_3953
Position (kb)
4592
4593
4594
4595 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4592.217 kb on + strand, within Pf6N2E2_3951 at 4592.217 kb on + strand, within Pf6N2E2_3951 at 4592.217 kb on + strand, within Pf6N2E2_3951 at 4592.217 kb on + strand, within Pf6N2E2_3951 at 4592.218 kb on - strand, within Pf6N2E2_3951 at 4592.349 kb on + strand, within Pf6N2E2_3951 at 4592.349 kb on + strand, within Pf6N2E2_3951 at 4592.349 kb on + strand, within Pf6N2E2_3951 at 4592.349 kb on + strand, within Pf6N2E2_3951 at 4592.350 kb on - strand, within Pf6N2E2_3951 at 4592.350 kb on - strand, within Pf6N2E2_3951 at 4592.439 kb on + strand, within Pf6N2E2_3951 at 4592.458 kb on - strand, within Pf6N2E2_3951 at 4592.801 kb on + strand at 4592.801 kb on + strand at 4592.802 kb on - strand at 4592.822 kb on + strand at 4592.823 kb on - strand at 4592.867 kb on + strand at 4592.876 kb on - strand at 4592.876 kb on - strand at 4592.876 kb on - strand at 4592.876 kb on - strand at 4592.876 kb on - strand at 4592.901 kb on + strand at 4592.901 kb on + strand at 4592.901 kb on + strand at 4592.901 kb on + strand at 4592.901 kb on + strand at 4592.902 kb on - strand at 4592.902 kb on - strand at 4592.902 kb on - strand at 4592.902 kb on - strand at 4592.902 kb on - strand at 4592.920 kb on + strand at 4592.921 kb on - strand at 4593.017 kb on - strand at 4593.017 kb on - strand at 4593.017 kb on - strand at 4593.038 kb on + strand at 4593.304 kb on + strand, within Pf6N2E2_3952 at 4593.305 kb on - strand, within Pf6N2E2_3952 at 4593.305 kb on - strand, within Pf6N2E2_3952 at 4593.580 kb on + strand, within Pf6N2E2_3952 at 4593.580 kb on + strand, within Pf6N2E2_3952 at 4593.580 kb on + strand, within Pf6N2E2_3952 at 4593.580 kb on + strand, within Pf6N2E2_3952 at 4593.581 kb on - strand, within Pf6N2E2_3952 at 4593.581 kb on - strand, within Pf6N2E2_3952 at 4593.581 kb on - strand, within Pf6N2E2_3952 at 4593.581 kb on - strand, within Pf6N2E2_3952 at 4593.581 kb on - strand, within Pf6N2E2_3952 at 4593.863 kb on - strand, within Pf6N2E2_3952 at 4593.869 kb on + strand, within Pf6N2E2_3952 at 4594.195 kb on + strand at 4594.196 kb on - strand at 4594.227 kb on - strand at 4594.227 kb on - strand at 4594.300 kb on + strand at 4594.300 kb on + strand at 4594.300 kb on + strand at 4594.300 kb on + strand at 4594.301 kb on - strand at 4594.301 kb on - strand at 4594.408 kb on + strand, within Pf6N2E2_3953 at 4594.409 kb on - strand, within Pf6N2E2_3953 at 4594.409 kb on - strand, within Pf6N2E2_3953 at 4594.409 kb on - strand, within Pf6N2E2_3953 at 4594.409 kb on - strand, within Pf6N2E2_3953 at 4594.431 kb on + strand, within Pf6N2E2_3953 at 4594.454 kb on + strand, within Pf6N2E2_3953 at 4594.455 kb on - strand, within Pf6N2E2_3953 at 4594.474 kb on + strand, within Pf6N2E2_3953 at 4594.474 kb on + strand, within Pf6N2E2_3953 at 4594.474 kb on + strand, within Pf6N2E2_3953 at 4594.474 kb on + strand, within Pf6N2E2_3953 at 4594.474 kb on + strand, within Pf6N2E2_3953 at 4594.474 kb on + strand, within Pf6N2E2_3953 at 4594.475 kb on - strand, within Pf6N2E2_3953 at 4594.475 kb on - strand, within Pf6N2E2_3953 at 4594.475 kb on - strand, within Pf6N2E2_3953 at 4594.475 kb on - strand, within Pf6N2E2_3953 at 4594.475 kb on - strand, within Pf6N2E2_3953 at 4594.475 kb on - strand, within Pf6N2E2_3953 at 4594.475 kb on - strand, within Pf6N2E2_3953 at 4594.475 kb on - strand, within Pf6N2E2_3953 at 4594.475 kb on - strand, within Pf6N2E2_3953 at 4594.475 kb on - strand, within Pf6N2E2_3953 at 4594.475 kb on - strand, within Pf6N2E2_3953 at 4594.475 kb on - strand, within Pf6N2E2_3953 at 4594.475 kb on - strand, within Pf6N2E2_3953 at 4594.575 kb on - strand, within Pf6N2E2_3953 at 4594.720 kb on + strand, within Pf6N2E2_3953 at 4594.810 kb on + strand, within Pf6N2E2_3953 at 4594.811 kb on - strand, within Pf6N2E2_3953 at 4594.828 kb on + strand, within Pf6N2E2_3953 at 4594.828 kb on + strand, within Pf6N2E2_3953 at 4594.828 kb on + strand, within Pf6N2E2_3953 at 4594.829 kb on - strand, within Pf6N2E2_3953 at 4594.829 kb on - strand, within Pf6N2E2_3953 at 4594.829 kb on - strand, within Pf6N2E2_3953 at 4594.829 kb on - strand, within Pf6N2E2_3953 at 4594.829 kb on - strand, within Pf6N2E2_3953 at 4594.829 kb on - strand, within Pf6N2E2_3953 at 4594.829 kb on - strand, within Pf6N2E2_3953 at 4594.860 kb on + strand, within Pf6N2E2_3953 at 4594.860 kb on + strand, within Pf6N2E2_3953 at 4594.860 kb on + strand, within Pf6N2E2_3953 at 4594.860 kb on + strand, within Pf6N2E2_3953 at 4594.860 kb on + strand, within Pf6N2E2_3953 at 4594.861 kb on - strand, within Pf6N2E2_3953 at 4594.861 kb on - strand, within Pf6N2E2_3953 at 4594.877 kb on - strand, within Pf6N2E2_3953
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 defined with Zinc 0.016 mM remove 4,592,217 + Pf6N2E2_3951 0.43 +0.7 4,592,217 + Pf6N2E2_3951 0.43 -0.8 4,592,217 + Pf6N2E2_3951 0.43 +0.4 4,592,217 + Pf6N2E2_3951 0.43 +0.0 4,592,218 - Pf6N2E2_3951 0.43 +0.5 4,592,349 + Pf6N2E2_3951 0.55 -0.1 4,592,349 + Pf6N2E2_3951 0.55 +1.0 4,592,349 + Pf6N2E2_3951 0.55 +0.2 4,592,349 + Pf6N2E2_3951 0.55 +0.1 4,592,350 - Pf6N2E2_3951 0.55 +0.1 4,592,350 - Pf6N2E2_3951 0.55 +0.6 4,592,439 + Pf6N2E2_3951 0.63 +0.3 4,592,458 - Pf6N2E2_3951 0.65 +1.3 4,592,801 + -2.2 4,592,801 + +0.7 4,592,802 - -1.6 4,592,822 + -0.3 4,592,823 - -0.0 4,592,867 + -0.7 4,592,876 - -2.2 4,592,876 - -0.7 4,592,876 - -0.1 4,592,876 - -1.1 4,592,876 - -1.0 4,592,901 + -0.8 4,592,901 + +0.6 4,592,901 + +1.6 4,592,901 + -0.5 4,592,901 + -0.4 4,592,902 - +0.3 4,592,902 - -1.1 4,592,902 - -1.6 4,592,902 - +0.2 4,592,902 - -0.8 4,592,920 + -0.0 4,592,921 - +0.3 4,593,017 - -2.9 4,593,017 - -2.0 4,593,017 - -0.0 4,593,038 + -1.2 4,593,304 + Pf6N2E2_3952 0.27 -0.4 4,593,305 - Pf6N2E2_3952 0.27 -2.0 4,593,305 - Pf6N2E2_3952 0.27 -2.5 4,593,580 + Pf6N2E2_3952 0.51 +2.0 4,593,580 + Pf6N2E2_3952 0.51 -1.0 4,593,580 + Pf6N2E2_3952 0.51 -0.3 4,593,580 + Pf6N2E2_3952 0.51 -0.8 4,593,581 - Pf6N2E2_3952 0.51 -1.8 4,593,581 - Pf6N2E2_3952 0.51 -0.7 4,593,581 - Pf6N2E2_3952 0.51 -2.6 4,593,581 - Pf6N2E2_3952 0.51 -1.3 4,593,581 - Pf6N2E2_3952 0.51 -0.1 4,593,863 - Pf6N2E2_3952 0.75 -1.0 4,593,869 + Pf6N2E2_3952 0.76 -0.0 4,594,195 + +0.1 4,594,196 - +0.7 4,594,227 - -0.3 4,594,227 - -0.2 4,594,300 + -0.3 4,594,300 + -0.3 4,594,300 + -1.1 4,594,300 + -2.6 4,594,301 - +0.3 4,594,301 - -0.7 4,594,408 + Pf6N2E2_3953 0.17 +0.5 4,594,409 - Pf6N2E2_3953 0.17 +1.4 4,594,409 - Pf6N2E2_3953 0.17 -0.9 4,594,409 - Pf6N2E2_3953 0.17 +0.1 4,594,409 - Pf6N2E2_3953 0.17 +1.0 4,594,431 + Pf6N2E2_3953 0.20 +0.7 4,594,454 + Pf6N2E2_3953 0.23 +0.1 4,594,455 - Pf6N2E2_3953 0.23 -0.2 4,594,474 + Pf6N2E2_3953 0.26 -0.5 4,594,474 + Pf6N2E2_3953 0.26 +0.3 4,594,474 + Pf6N2E2_3953 0.26 -0.8 4,594,474 + Pf6N2E2_3953 0.26 -0.4 4,594,474 + Pf6N2E2_3953 0.26 -0.3 4,594,474 + Pf6N2E2_3953 0.26 +0.5 4,594,475 - Pf6N2E2_3953 0.26 -0.3 4,594,475 - Pf6N2E2_3953 0.26 +1.0 4,594,475 - Pf6N2E2_3953 0.26 +0.3 4,594,475 - Pf6N2E2_3953 0.26 -0.8 4,594,475 - Pf6N2E2_3953 0.26 -0.1 4,594,475 - Pf6N2E2_3953 0.26 +0.1 4,594,475 - Pf6N2E2_3953 0.26 -0.3 4,594,475 - Pf6N2E2_3953 0.26 -1.0 4,594,475 - Pf6N2E2_3953 0.26 +0.1 4,594,475 - Pf6N2E2_3953 0.26 -0.2 4,594,475 - Pf6N2E2_3953 0.26 -0.2 4,594,475 - Pf6N2E2_3953 0.26 -0.2 4,594,475 - Pf6N2E2_3953 0.26 -0.6 4,594,575 - Pf6N2E2_3953 0.39 -0.9 4,594,720 + Pf6N2E2_3953 0.57 -1.6 4,594,810 + Pf6N2E2_3953 0.69 +0.1 4,594,811 - Pf6N2E2_3953 0.69 +0.1 4,594,828 + Pf6N2E2_3953 0.71 +0.8 4,594,828 + Pf6N2E2_3953 0.71 -0.3 4,594,828 + Pf6N2E2_3953 0.71 +0.9 4,594,829 - Pf6N2E2_3953 0.71 -0.6 4,594,829 - Pf6N2E2_3953 0.71 -1.0 4,594,829 - Pf6N2E2_3953 0.71 -0.1 4,594,829 - Pf6N2E2_3953 0.71 -1.0 4,594,829 - Pf6N2E2_3953 0.71 -0.3 4,594,829 - Pf6N2E2_3953 0.71 +0.2 4,594,829 - Pf6N2E2_3953 0.71 +0.5 4,594,860 + Pf6N2E2_3953 0.75 +1.2 4,594,860 + Pf6N2E2_3953 0.75 -1.2 4,594,860 + Pf6N2E2_3953 0.75 -0.6 4,594,860 + Pf6N2E2_3953 0.75 +0.3 4,594,860 + Pf6N2E2_3953 0.75 -0.5 4,594,861 - Pf6N2E2_3953 0.75 +1.2 4,594,861 - Pf6N2E2_3953 0.75 -1.9 4,594,877 - Pf6N2E2_3953 0.77 -0.0
Or see this region's nucleotide sequence