Experiment: RCH2 defined with Zinc 0.016 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3390 and Pf6N2E2_3391 are separated by 124 nucleotides
Pf6N2E2_3390 - hypothetical protein, at 3,924,559 to 3,924,675
_3390
Pf6N2E2_3391 - hypothetical protein, at 3,924,800 to 3,924,958
_3391
Position (kb)
3924
3925 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3923.836 kb on + strand at 3923.837 kb on - strand at 3923.973 kb on + strand at 3923.974 kb on - strand at 3923.990 kb on + strand at 3923.990 kb on + strand at 3923.990 kb on + strand at 3924.036 kb on + strand at 3924.073 kb on + strand at 3924.074 kb on - strand at 3924.079 kb on + strand at 3924.138 kb on + strand at 3924.138 kb on + strand at 3924.139 kb on - strand at 3924.140 kb on + strand at 3924.140 kb on + strand at 3924.140 kb on + strand at 3924.141 kb on - strand at 3924.141 kb on - strand at 3924.141 kb on - strand at 3924.233 kb on + strand at 3924.233 kb on + strand at 3924.233 kb on + strand at 3924.234 kb on - strand at 3924.234 kb on - strand at 3924.234 kb on - strand at 3924.268 kb on + strand at 3924.268 kb on + strand at 3924.269 kb on - strand at 3924.269 kb on - strand at 3924.269 kb on - strand at 3924.272 kb on + strand at 3924.272 kb on + strand at 3924.272 kb on + strand at 3924.272 kb on + strand at 3924.272 kb on + strand at 3924.272 kb on + strand at 3924.272 kb on + strand at 3924.272 kb on + strand at 3924.272 kb on + strand at 3924.272 kb on + strand at 3924.272 kb on + strand at 3924.272 kb on + strand at 3924.272 kb on + strand at 3924.272 kb on + strand at 3924.272 kb on + strand at 3924.272 kb on + strand at 3924.272 kb on + strand at 3924.273 kb on - strand at 3924.273 kb on - strand at 3924.273 kb on - strand at 3924.273 kb on - strand at 3924.273 kb on - strand at 3924.273 kb on - strand at 3924.273 kb on - strand at 3924.273 kb on - strand at 3924.273 kb on - strand at 3924.273 kb on - strand at 3924.273 kb on - strand at 3924.273 kb on - strand at 3924.273 kb on - strand at 3924.273 kb on - strand at 3924.273 kb on - strand at 3924.273 kb on - strand at 3924.273 kb on - strand at 3924.273 kb on - strand at 3924.274 kb on + strand at 3924.275 kb on - strand at 3924.275 kb on - strand at 3924.345 kb on + strand at 3924.345 kb on + strand at 3924.346 kb on - strand at 3924.346 kb on - strand at 3924.346 kb on - strand at 3924.346 kb on - strand at 3924.346 kb on - strand at 3924.346 kb on - strand at 3924.502 kb on + strand at 3924.502 kb on + strand at 3924.502 kb on + strand at 3924.502 kb on + strand at 3924.502 kb on + strand at 3924.502 kb on + strand at 3924.502 kb on + strand at 3924.503 kb on - strand at 3924.783 kb on + strand at 3924.783 kb on + strand at 3924.783 kb on + strand at 3924.783 kb on + strand at 3924.784 kb on - strand at 3924.784 kb on - strand at 3924.784 kb on - strand at 3924.854 kb on + strand, within Pf6N2E2_3391 at 3924.854 kb on + strand, within Pf6N2E2_3391 at 3924.854 kb on + strand, within Pf6N2E2_3391 at 3924.855 kb on - strand, within Pf6N2E2_3391 at 3924.855 kb on - strand, within Pf6N2E2_3391 at 3924.855 kb on - strand, within Pf6N2E2_3391 at 3924.931 kb on + strand, within Pf6N2E2_3391 at 3924.941 kb on + strand, within Pf6N2E2_3391 at 3924.942 kb on - strand, within Pf6N2E2_3391 at 3924.942 kb on - strand, within Pf6N2E2_3391 at 3924.942 kb on - strand, within Pf6N2E2_3391 at 3924.942 kb on - strand, within Pf6N2E2_3391 at 3924.956 kb on + strand at 3924.994 kb on + strand at 3924.994 kb on + strand at 3924.994 kb on + strand at 3924.994 kb on + strand at 3924.995 kb on - strand at 3924.995 kb on - strand at 3924.995 kb on - strand at 3924.995 kb on - strand at 3925.063 kb on + strand at 3925.064 kb on - strand at 3925.064 kb on - strand at 3925.106 kb on + strand at 3925.106 kb on + strand at 3925.106 kb on + strand at 3925.106 kb on + strand at 3925.106 kb on + strand at 3925.106 kb on + strand at 3925.107 kb on - strand at 3925.147 kb on + strand at 3925.147 kb on + strand at 3925.147 kb on + strand at 3925.147 kb on + strand at 3925.148 kb on - strand at 3925.148 kb on - strand at 3925.263 kb on + strand at 3925.264 kb on - strand at 3925.278 kb on + strand at 3925.278 kb on + strand at 3925.278 kb on + strand at 3925.279 kb on - strand at 3925.279 kb on - strand at 3925.279 kb on - strand at 3925.279 kb on - strand at 3925.279 kb on - strand at 3925.284 kb on + strand at 3925.284 kb on + strand at 3925.285 kb on - strand at 3925.285 kb on - strand at 3925.285 kb on - strand at 3925.288 kb on + strand at 3925.288 kb on + strand at 3925.288 kb on + strand at 3925.288 kb on + strand at 3925.288 kb on + strand at 3925.288 kb on + strand at 3925.288 kb on + strand at 3925.288 kb on + strand at 3925.289 kb on - strand at 3925.289 kb on - strand at 3925.289 kb on - strand at 3925.289 kb on - strand at 3925.296 kb on + strand at 3925.296 kb on + strand at 3925.297 kb on - strand at 3925.297 kb on - strand at 3925.299 kb on + strand at 3925.299 kb on + strand at 3925.299 kb on + strand at 3925.300 kb on - strand at 3925.300 kb on - strand at 3925.300 kb on - strand at 3925.300 kb on - strand at 3925.300 kb on - strand at 3925.300 kb on - strand at 3925.300 kb on - strand at 3925.381 kb on - strand at 3925.381 kb on - strand at 3925.414 kb on - strand at 3925.419 kb on + strand at 3925.419 kb on + strand at 3925.419 kb on + strand at 3925.420 kb on - strand at 3925.420 kb on - strand at 3925.420 kb on - strand at 3925.424 kb on + strand at 3925.424 kb on + strand at 3925.424 kb on + strand at 3925.424 kb on + strand at 3925.425 kb on - strand at 3925.425 kb on - strand at 3925.425 kb on - strand at 3925.425 kb on - strand at 3925.425 kb on - strand at 3925.425 kb on - strand at 3925.425 kb on - strand at 3925.426 kb on + strand at 3925.426 kb on + strand at 3925.426 kb on + strand at 3925.426 kb on + strand at 3925.426 kb on + strand at 3925.426 kb on + strand at 3925.427 kb on - strand at 3925.427 kb on - strand at 3925.427 kb on - strand at 3925.427 kb on - strand at 3925.427 kb on - strand at 3925.427 kb on - strand at 3925.427 kb on - strand at 3925.512 kb on + strand at 3925.513 kb on - strand at 3925.513 kb on - strand at 3925.553 kb on + strand at 3925.553 kb on + strand at 3925.553 kb on + strand at 3925.553 kb on + strand at 3925.553 kb on + strand at 3925.553 kb on + strand at 3925.554 kb on - strand at 3925.554 kb on - strand at 3925.554 kb on - strand at 3925.554 kb on - strand at 3925.557 kb on + strand at 3925.557 kb on + strand at 3925.558 kb on - strand at 3925.558 kb on - strand at 3925.578 kb on + strand at 3925.579 kb on - strand at 3925.653 kb on + strand at 3925.654 kb on - strand at 3925.688 kb on + strand at 3925.689 kb on - strand at 3925.694 kb on + strand at 3925.832 kb on + strand at 3925.832 kb on + strand at 3925.833 kb on - strand at 3925.910 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2 defined with Zinc 0.016 mM remove 3,923,836 + -1.4 3,923,837 - -0.5 3,923,973 + +0.9 3,923,974 - -0.0 3,923,990 + +0.7 3,923,990 + -0.9 3,923,990 + -0.9 3,924,036 + +1.1 3,924,073 + -0.3 3,924,074 - +0.7 3,924,079 + -0.3 3,924,138 + -0.4 3,924,138 + -0.0 3,924,139 - -0.4 3,924,140 + +0.6 3,924,140 + -1.1 3,924,140 + -0.1 3,924,141 - +0.1 3,924,141 - +0.5 3,924,141 - -0.3 3,924,233 + +0.4 3,924,233 + +0.1 3,924,233 + -0.0 3,924,234 - -0.4 3,924,234 - +0.2 3,924,234 - -0.4 3,924,268 + +0.3 3,924,268 + +0.3 3,924,269 - +0.6 3,924,269 - -0.9 3,924,269 - -1.3 3,924,272 + +0.1 3,924,272 + -0.6 3,924,272 + +0.2 3,924,272 + +0.0 3,924,272 + -0.3 3,924,272 + -0.6 3,924,272 + -0.4 3,924,272 + +0.6 3,924,272 + -0.9 3,924,272 + +0.1 3,924,272 + +0.3 3,924,272 + +0.1 3,924,272 + +1.3 3,924,272 + -0.7 3,924,272 + +0.9 3,924,272 + +0.7 3,924,272 + +0.3 3,924,273 - +0.0 3,924,273 - +0.7 3,924,273 - +0.0 3,924,273 - -0.1 3,924,273 - +0.6 3,924,273 - -0.3 3,924,273 - +0.4 3,924,273 - -0.7 3,924,273 - +0.3 3,924,273 - -0.5 3,924,273 - -1.0 3,924,273 - +0.7 3,924,273 - -0.0 3,924,273 - -0.9 3,924,273 - -0.6 3,924,273 - +0.3 3,924,273 - -0.5 3,924,273 - -0.3 3,924,274 + +0.7 3,924,275 - -1.4 3,924,275 - -1.1 3,924,345 + +0.7 3,924,345 + -0.3 3,924,346 - +0.7 3,924,346 - -0.6 3,924,346 - -0.1 3,924,346 - -0.1 3,924,346 - -0.4 3,924,346 - -0.3 3,924,502 + -0.5 3,924,502 + -0.5 3,924,502 + -0.3 3,924,502 + -0.6 3,924,502 + -0.3 3,924,502 + -0.8 3,924,502 + -0.7 3,924,503 - -0.4 3,924,783 + +0.2 3,924,783 + +0.3 3,924,783 + -0.8 3,924,783 + +1.8 3,924,784 - -0.3 3,924,784 - -1.2 3,924,784 - +0.5 3,924,854 + Pf6N2E2_3391 0.34 +0.8 3,924,854 + Pf6N2E2_3391 0.34 +0.8 3,924,854 + Pf6N2E2_3391 0.34 +1.3 3,924,855 - Pf6N2E2_3391 0.35 +0.4 3,924,855 - Pf6N2E2_3391 0.35 +1.2 3,924,855 - Pf6N2E2_3391 0.35 +0.3 3,924,931 + Pf6N2E2_3391 0.82 +1.3 3,924,941 + Pf6N2E2_3391 0.89 -0.3 3,924,942 - Pf6N2E2_3391 0.89 -0.0 3,924,942 - Pf6N2E2_3391 0.89 +0.3 3,924,942 - Pf6N2E2_3391 0.89 -0.4 3,924,942 - Pf6N2E2_3391 0.89 +0.1 3,924,956 + +0.3 3,924,994 + -0.9 3,924,994 + +0.1 3,924,994 + +0.0 3,924,994 + +0.2 3,924,995 - +0.1 3,924,995 - -0.3 3,924,995 - +0.4 3,924,995 - -0.1 3,925,063 + -0.4 3,925,064 - -0.1 3,925,064 - +0.4 3,925,106 + +0.7 3,925,106 + +0.2 3,925,106 + +0.4 3,925,106 + +0.5 3,925,106 + +1.2 3,925,106 + +0.1 3,925,107 - -0.7 3,925,147 + -0.2 3,925,147 + -0.5 3,925,147 + -0.1 3,925,147 + +0.9 3,925,148 - -0.2 3,925,148 - -0.7 3,925,263 + +0.7 3,925,264 - -0.3 3,925,278 + +0.0 3,925,278 + +0.3 3,925,278 + +0.2 3,925,279 - +1.3 3,925,279 - +0.0 3,925,279 - +0.1 3,925,279 - -2.1 3,925,279 - -0.0 3,925,284 + +0.8 3,925,284 + -0.6 3,925,285 - -1.4 3,925,285 - +0.7 3,925,285 - -0.1 3,925,288 + +0.4 3,925,288 + -1.0 3,925,288 + -0.6 3,925,288 + -0.7 3,925,288 + -0.3 3,925,288 + +0.7 3,925,288 + -1.8 3,925,288 + +0.5 3,925,289 - +0.1 3,925,289 - +0.5 3,925,289 - -1.3 3,925,289 - -0.0 3,925,296 + -0.7 3,925,296 + -1.3 3,925,297 - +0.3 3,925,297 - +0.3 3,925,299 + +1.3 3,925,299 + -0.1 3,925,299 + -0.3 3,925,300 - +0.0 3,925,300 - +0.3 3,925,300 - -0.5 3,925,300 - +1.0 3,925,300 - -0.1 3,925,300 - -0.7 3,925,300 - +0.1 3,925,381 - -0.5 3,925,381 - -0.7 3,925,414 - -0.6 3,925,419 + -0.1 3,925,419 + -1.0 3,925,419 + +1.2 3,925,420 - +0.6 3,925,420 - -0.2 3,925,420 - +0.4 3,925,424 + -0.2 3,925,424 + -0.6 3,925,424 + +0.0 3,925,424 + -0.5 3,925,425 - -1.1 3,925,425 - +0.2 3,925,425 - -0.2 3,925,425 - -1.4 3,925,425 - -0.0 3,925,425 - -0.5 3,925,425 - -2.1 3,925,426 + +0.4 3,925,426 + +0.1 3,925,426 + -0.4 3,925,426 + +0.8 3,925,426 + +1.0 3,925,426 + -0.1 3,925,427 - -0.1 3,925,427 - +0.6 3,925,427 - +1.3 3,925,427 - -0.3 3,925,427 - +0.5 3,925,427 - +1.0 3,925,427 - -2.0 3,925,512 + +0.3 3,925,513 - +0.3 3,925,513 - -1.9 3,925,553 + -0.7 3,925,553 + +0.3 3,925,553 + -0.4 3,925,553 + -0.1 3,925,553 + +0.7 3,925,553 + +0.7 3,925,554 - -0.5 3,925,554 - -0.6 3,925,554 - -0.7 3,925,554 - +1.0 3,925,557 + +0.3 3,925,557 + -0.1 3,925,558 - +0.1 3,925,558 - +0.7 3,925,578 + -0.3 3,925,579 - +2.0 3,925,653 + +0.9 3,925,654 - -1.6 3,925,688 + -0.6 3,925,689 - +0.8 3,925,694 + +1.1 3,925,832 + -0.3 3,925,832 + +0.2 3,925,833 - -2.3 3,925,910 - -0.1
Or see this region's nucleotide sequence