Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_003889 and ABIE53_003890 are separated by 16 nucleotides ABIE53_003890 and ABIE53_003891 are separated by 49 nucleotides ABIE53_003891 and ABIE53_003892 are separated by 4 nucleotides
ABIE53_003889: ABIE53_003889 - methylthioribose-1-phosphate isomerase, at 27,565 to 28,644
_003889
ABIE53_003890: ABIE53_003890 - 5-methylthioribose kinase, at 28,661 to 29,929
_003890
ABIE53_003891: ABIE53_003891 - DNA-binding GntR family transcriptional regulator, at 29,979 to 30,440
_003891
ABIE53_003892: ABIE53_003892 - DNA-binding FadR family transcriptional regulator, at 30,445 to 30,699
_003892
Position (kb) 28
29
30 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 27.824 kb on + strand, within ABIE53_003889 at 27.825 kb on - strand, within ABIE53_003889 at 27.825 kb on - strand, within ABIE53_003889 at 28.269 kb on - strand, within ABIE53_003889 at 28.451 kb on + strand, within ABIE53_003889 at 28.451 kb on + strand, within ABIE53_003889 at 28.452 kb on - strand, within ABIE53_003889 at 28.663 kb on - strand at 28.670 kb on + strand at 28.670 kb on + strand at 28.918 kb on - strand, within ABIE53_003890 at 28.918 kb on - strand, within ABIE53_003890 at 29.024 kb on + strand, within ABIE53_003890 at 29.110 kb on - strand, within ABIE53_003890 at 29.110 kb on - strand, within ABIE53_003890 at 29.353 kb on - strand, within ABIE53_003890 at 29.353 kb on - strand, within ABIE53_003890 at 29.356 kb on + strand, within ABIE53_003890 at 29.506 kb on - strand, within ABIE53_003890 at 29.506 kb on - strand, within ABIE53_003890 at 29.506 kb on - strand, within ABIE53_003890 at 29.625 kb on + strand, within ABIE53_003890 at 29.626 kb on - strand, within ABIE53_003890 at 29.626 kb on - strand, within ABIE53_003890 at 29.626 kb on - strand, within ABIE53_003890 at 29.797 kb on - strand, within ABIE53_003890 at 29.802 kb on + strand, within ABIE53_003890 at 29.803 kb on - strand at 29.803 kb on - strand at 29.890 kb on - strand at 29.912 kb on - strand at 30.025 kb on + strand at 30.026 kb on - strand, within ABIE53_003891 at 30.026 kb on - strand, within ABIE53_003891 at 30.029 kb on - strand, within ABIE53_003891 at 30.038 kb on + strand, within ABIE53_003891 at 30.039 kb on - strand, within ABIE53_003891 at 30.039 kb on - strand, within ABIE53_003891 at 30.164 kb on + strand, within ABIE53_003891 at 30.165 kb on - strand, within ABIE53_003891 at 30.165 kb on - strand, within ABIE53_003891 at 30.269 kb on - strand, within ABIE53_003891 at 30.729 kb on - strand at 30.730 kb on + strand at 30.730 kb on + strand at 30.730 kb on + strand at 30.731 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 27,824 + ABIE53_003889 0.24 +0.5 27,825 - ABIE53_003889 0.24 -0.2 27,825 - ABIE53_003889 0.24 +2.5 28,269 - ABIE53_003889 0.65 +1.1 28,451 + ABIE53_003889 0.82 -0.0 28,451 + ABIE53_003889 0.82 +0.4 28,452 - ABIE53_003889 0.82 -0.8 28,663 - +1.0 28,670 + +1.0 28,670 + +0.2 28,918 - ABIE53_003890 0.20 -0.0 28,918 - ABIE53_003890 0.20 -0.9 29,024 + ABIE53_003890 0.29 +0.3 29,110 - ABIE53_003890 0.35 +1.5 29,110 - ABIE53_003890 0.35 -2.5 29,353 - ABIE53_003890 0.55 -1.3 29,353 - ABIE53_003890 0.55 -1.4 29,356 + ABIE53_003890 0.55 -0.8 29,506 - ABIE53_003890 0.67 -0.0 29,506 - ABIE53_003890 0.67 +0.7 29,506 - ABIE53_003890 0.67 -0.1 29,625 + ABIE53_003890 0.76 -0.8 29,626 - ABIE53_003890 0.76 -0.8 29,626 - ABIE53_003890 0.76 +2.5 29,626 - ABIE53_003890 0.76 -0.8 29,797 - ABIE53_003890 0.90 -0.5 29,802 + ABIE53_003890 0.90 -1.0 29,803 - +1.8 29,803 - +1.0 29,890 - -0.3 29,912 - -0.7 30,025 + +0.8 30,026 - ABIE53_003891 0.10 -1.0 30,026 - ABIE53_003891 0.10 +2.1 30,029 - ABIE53_003891 0.11 +0.2 30,038 + ABIE53_003891 0.13 +0.5 30,039 - ABIE53_003891 0.13 +0.2 30,039 - ABIE53_003891 0.13 +0.5 30,164 + ABIE53_003891 0.40 -3.2 30,165 - ABIE53_003891 0.40 -0.9 30,165 - ABIE53_003891 0.40 +1.5 30,269 - ABIE53_003891 0.63 +0.5 30,729 - +2.5 30,730 + -1.4 30,730 + -0.6 30,730 + -0.3 30,731 - +1.5
Or see this region's nucleotide sequence