Experiment: Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000447 and ABIE53_000448 are separated by 268 nucleotides ABIE53_000448 and ABIE53_000449 are separated by 10 nucleotides ABIE53_000449 and ABIE53_000450 overlap by 2 nucleotides ABIE53_000450 and ABIE53_000451 are separated by 258 nucleotides
ABIE53_000447: ABIE53_000447 - APA family basic amino acid/polyamine antiporter, at 482,911 to 484,302
_000447
ABIE53_000448: ABIE53_000448 - two-component system invasion response regulator UvrY, at 484,571 to 485,227
_000448
ABIE53_000449: ABIE53_000449 - signal transduction histidine kinase, at 485,238 to 486,134
_000449
ABIE53_000450: ABIE53_000450 - hypothetical protein, at 486,133 to 486,294
_000450
ABIE53_000451: ABIE53_000451 - ferredoxin--NADP+ reductase, at 486,553 to 487,323
_000451
Position (kb) 485
486
487 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 484.319 kb on + strand at 484.320 kb on - strand at 484.320 kb on - strand at 484.320 kb on - strand at 484.365 kb on - strand at 484.401 kb on + strand at 484.401 kb on + strand at 484.401 kb on + strand at 484.401 kb on + strand at 484.402 kb on - strand at 484.402 kb on - strand at 484.421 kb on + strand at 484.421 kb on + strand at 484.421 kb on + strand at 484.421 kb on + strand at 484.422 kb on - strand at 484.422 kb on - strand at 484.422 kb on - strand at 484.422 kb on - strand at 484.572 kb on + strand at 484.573 kb on - strand at 484.620 kb on + strand at 484.620 kb on + strand at 484.620 kb on + strand at 484.620 kb on + strand at 484.620 kb on + strand at 484.620 kb on + strand at 484.620 kb on + strand at 484.620 kb on + strand at 484.620 kb on + strand at 484.620 kb on + strand at 484.620 kb on + strand at 484.620 kb on + strand at 484.620 kb on + strand at 484.620 kb on + strand at 484.620 kb on + strand at 484.620 kb on + strand at 484.621 kb on - strand at 484.621 kb on - strand at 484.621 kb on - strand at 484.621 kb on - strand at 484.621 kb on - strand at 484.621 kb on - strand at 484.621 kb on - strand at 484.621 kb on - strand at 484.621 kb on - strand at 484.621 kb on - strand at 484.621 kb on - strand at 484.621 kb on - strand at 484.621 kb on - strand at 484.621 kb on - strand at 484.621 kb on - strand at 484.678 kb on - strand, within ABIE53_000448 at 484.764 kb on + strand, within ABIE53_000448 at 484.764 kb on + strand, within ABIE53_000448 at 484.764 kb on + strand, within ABIE53_000448 at 484.764 kb on + strand, within ABIE53_000448 at 484.765 kb on - strand, within ABIE53_000448 at 484.765 kb on - strand, within ABIE53_000448 at 484.765 kb on - strand, within ABIE53_000448 at 484.765 kb on - strand, within ABIE53_000448 at 484.818 kb on + strand, within ABIE53_000448 at 484.818 kb on + strand, within ABIE53_000448 at 484.818 kb on + strand, within ABIE53_000448 at 484.818 kb on + strand, within ABIE53_000448 at 484.818 kb on + strand, within ABIE53_000448 at 484.818 kb on + strand, within ABIE53_000448 at 484.818 kb on + strand, within ABIE53_000448 at 484.818 kb on + strand, within ABIE53_000448 at 484.819 kb on - strand, within ABIE53_000448 at 484.819 kb on - strand, within ABIE53_000448 at 484.819 kb on - strand, within ABIE53_000448 at 484.819 kb on - strand, within ABIE53_000448 at 484.819 kb on - strand, within ABIE53_000448 at 484.819 kb on - strand, within ABIE53_000448 at 484.819 kb on - strand, within ABIE53_000448 at 484.819 kb on - strand, within ABIE53_000448 at 484.819 kb on - strand, within ABIE53_000448 at 484.819 kb on - strand, within ABIE53_000448 at 484.819 kb on - strand, within ABIE53_000448 at 484.819 kb on - strand, within ABIE53_000448 at 484.819 kb on - strand, within ABIE53_000448 at 484.819 kb on - strand, within ABIE53_000448 at 484.819 kb on - strand, within ABIE53_000448 at 484.819 kb on - strand, within ABIE53_000448 at 484.819 kb on - strand, within ABIE53_000448 at 484.854 kb on + strand, within ABIE53_000448 at 484.854 kb on + strand, within ABIE53_000448 at 484.854 kb on + strand, within ABIE53_000448 at 484.854 kb on + strand, within ABIE53_000448 at 484.854 kb on + strand, within ABIE53_000448 at 484.855 kb on - strand, within ABIE53_000448 at 484.855 kb on - strand, within ABIE53_000448 at 484.855 kb on - strand, within ABIE53_000448 at 484.855 kb on - strand, within ABIE53_000448 at 484.855 kb on - strand, within ABIE53_000448 at 484.855 kb on - strand, within ABIE53_000448 at 484.855 kb on - strand, within ABIE53_000448 at 484.855 kb on - strand, within ABIE53_000448 at 484.855 kb on - strand, within ABIE53_000448 at 484.924 kb on - strand, within ABIE53_000448 at 484.924 kb on - strand, within ABIE53_000448 at 484.924 kb on - strand, within ABIE53_000448 at 484.924 kb on - strand, within ABIE53_000448 at 484.959 kb on + strand, within ABIE53_000448 at 484.960 kb on - strand, within ABIE53_000448 at 484.960 kb on - strand, within ABIE53_000448 at 484.960 kb on - strand, within ABIE53_000448 at 484.960 kb on - strand, within ABIE53_000448 at 484.974 kb on + strand, within ABIE53_000448 at 484.974 kb on + strand, within ABIE53_000448 at 484.975 kb on - strand, within ABIE53_000448 at 484.975 kb on - strand, within ABIE53_000448 at 484.975 kb on - strand, within ABIE53_000448 at 485.340 kb on - strand, within ABIE53_000449 at 485.591 kb on + strand, within ABIE53_000449 at 486.128 kb on + strand at 486.128 kb on + strand at 486.128 kb on + strand at 486.128 kb on + strand at 486.128 kb on + strand at 486.128 kb on + strand at 486.128 kb on + strand at 486.128 kb on + strand at 486.128 kb on + strand at 486.129 kb on - strand at 486.129 kb on - strand at 486.129 kb on - strand at 486.129 kb on - strand at 486.129 kb on - strand at 486.129 kb on - strand at 486.129 kb on - strand at 486.129 kb on - strand at 486.129 kb on - strand at 486.225 kb on + strand, within ABIE53_000450 at 486.226 kb on - strand, within ABIE53_000450 at 486.226 kb on - strand, within ABIE53_000450 at 486.226 kb on - strand, within ABIE53_000450 at 486.226 kb on - strand, within ABIE53_000450 at 486.226 kb on - strand, within ABIE53_000450 at 486.244 kb on + strand, within ABIE53_000450 at 486.244 kb on + strand, within ABIE53_000450 at 486.244 kb on + strand, within ABIE53_000450 at 486.245 kb on - strand, within ABIE53_000450 at 486.245 kb on - strand, within ABIE53_000450 at 486.245 kb on - strand, within ABIE53_000450 at 486.245 kb on - strand, within ABIE53_000450 at 486.261 kb on + strand, within ABIE53_000450 at 486.262 kb on - strand, within ABIE53_000450 at 486.262 kb on - strand, within ABIE53_000450 at 486.262 kb on - strand, within ABIE53_000450 at 486.273 kb on + strand, within ABIE53_000450 at 486.274 kb on - strand, within ABIE53_000450 at 486.351 kb on - strand at 486.398 kb on - strand at 486.398 kb on - strand at 486.398 kb on - strand at 486.406 kb on + strand at 486.407 kb on - strand at 486.437 kb on + strand at 486.438 kb on - strand at 486.438 kb on - strand at 486.438 kb on - strand at 486.438 kb on - strand at 486.483 kb on + strand at 486.483 kb on + strand at 486.484 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Brachypodium_distachyon; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_liquid; Collection=outgrowth_R2A_with_Tween_and_Cycloheximide; Time=21_days remove 484,319 + +1.6 484,320 - +0.1 484,320 - -2.5 484,320 - -0.8 484,365 - +0.2 484,401 + +0.5 484,401 + -3.0 484,401 + +0.0 484,401 + +1.0 484,402 - +1.0 484,402 - +2.6 484,421 + +2.6 484,421 + -1.0 484,421 + -0.2 484,421 + -0.7 484,422 - -1.3 484,422 - +0.3 484,422 - -0.7 484,422 - -1.1 484,572 + -1.8 484,573 - -1.3 484,620 + +0.1 484,620 + -1.1 484,620 + -0.9 484,620 + -0.2 484,620 + -1.4 484,620 + -0.2 484,620 + +0.0 484,620 + +0.0 484,620 + +1.3 484,620 + +1.9 484,620 + +0.6 484,620 + -1.5 484,620 + -0.0 484,620 + -0.7 484,620 + +0.6 484,620 + +0.9 484,621 - -0.4 484,621 - +1.0 484,621 - -0.4 484,621 - -0.2 484,621 - -0.3 484,621 - +0.7 484,621 - +1.0 484,621 - -1.7 484,621 - -0.7 484,621 - -1.7 484,621 - +0.0 484,621 - +0.1 484,621 - +0.3 484,621 - -1.5 484,621 - -1.0 484,678 - ABIE53_000448 0.16 +1.6 484,764 + ABIE53_000448 0.29 -1.3 484,764 + ABIE53_000448 0.29 -1.8 484,764 + ABIE53_000448 0.29 -1.0 484,764 + ABIE53_000448 0.29 -0.2 484,765 - ABIE53_000448 0.30 +1.2 484,765 - ABIE53_000448 0.30 -0.2 484,765 - ABIE53_000448 0.30 +0.4 484,765 - ABIE53_000448 0.30 -0.3 484,818 + ABIE53_000448 0.38 +0.6 484,818 + ABIE53_000448 0.38 +0.6 484,818 + ABIE53_000448 0.38 +0.2 484,818 + ABIE53_000448 0.38 -0.3 484,818 + ABIE53_000448 0.38 -1.3 484,818 + ABIE53_000448 0.38 +2.2 484,818 + ABIE53_000448 0.38 -0.1 484,818 + ABIE53_000448 0.38 +0.8 484,819 - ABIE53_000448 0.38 +0.5 484,819 - ABIE53_000448 0.38 -0.1 484,819 - ABIE53_000448 0.38 +1.5 484,819 - ABIE53_000448 0.38 -0.5 484,819 - ABIE53_000448 0.38 +2.6 484,819 - ABIE53_000448 0.38 +0.8 484,819 - ABIE53_000448 0.38 -0.7 484,819 - ABIE53_000448 0.38 +0.2 484,819 - ABIE53_000448 0.38 +0.0 484,819 - ABIE53_000448 0.38 -0.8 484,819 - ABIE53_000448 0.38 +1.6 484,819 - ABIE53_000448 0.38 -0.4 484,819 - ABIE53_000448 0.38 +0.0 484,819 - ABIE53_000448 0.38 +0.4 484,819 - ABIE53_000448 0.38 -0.2 484,819 - ABIE53_000448 0.38 -0.5 484,819 - ABIE53_000448 0.38 +0.1 484,854 + ABIE53_000448 0.43 +0.6 484,854 + ABIE53_000448 0.43 +1.2 484,854 + ABIE53_000448 0.43 +1.0 484,854 + ABIE53_000448 0.43 -0.5 484,854 + ABIE53_000448 0.43 -0.6 484,855 - ABIE53_000448 0.43 +2.6 484,855 - ABIE53_000448 0.43 +0.2 484,855 - ABIE53_000448 0.43 +1.5 484,855 - ABIE53_000448 0.43 +0.2 484,855 - ABIE53_000448 0.43 -0.9 484,855 - ABIE53_000448 0.43 -0.0 484,855 - ABIE53_000448 0.43 +0.0 484,855 - ABIE53_000448 0.43 +1.0 484,855 - ABIE53_000448 0.43 +1.0 484,924 - ABIE53_000448 0.54 +0.8 484,924 - ABIE53_000448 0.54 +0.9 484,924 - ABIE53_000448 0.54 -0.6 484,924 - ABIE53_000448 0.54 -0.8 484,959 + ABIE53_000448 0.59 +0.7 484,960 - ABIE53_000448 0.59 -0.1 484,960 - ABIE53_000448 0.59 +1.0 484,960 - ABIE53_000448 0.59 -0.5 484,960 - ABIE53_000448 0.59 -2.0 484,974 + ABIE53_000448 0.61 -0.2 484,974 + ABIE53_000448 0.61 +0.2 484,975 - ABIE53_000448 0.61 +0.0 484,975 - ABIE53_000448 0.61 -0.6 484,975 - ABIE53_000448 0.61 -0.2 485,340 - ABIE53_000449 0.11 +1.3 485,591 + ABIE53_000449 0.39 -1.6 486,128 + -0.4 486,128 + -0.1 486,128 + -1.6 486,128 + +1.1 486,128 + -1.4 486,128 + -0.8 486,128 + +1.2 486,128 + +0.5 486,128 + -0.7 486,129 - -0.4 486,129 - -2.8 486,129 - +1.1 486,129 - -0.0 486,129 - +2.6 486,129 - +0.1 486,129 - +1.8 486,129 - +0.9 486,129 - -0.4 486,225 + ABIE53_000450 0.57 -0.6 486,226 - ABIE53_000450 0.57 -0.4 486,226 - ABIE53_000450 0.57 +2.3 486,226 - ABIE53_000450 0.57 -2.2 486,226 - ABIE53_000450 0.57 -0.2 486,226 - ABIE53_000450 0.57 +0.2 486,244 + ABIE53_000450 0.69 +0.1 486,244 + ABIE53_000450 0.69 -2.1 486,244 + ABIE53_000450 0.69 -0.1 486,245 - ABIE53_000450 0.69 +1.9 486,245 - ABIE53_000450 0.69 -0.2 486,245 - ABIE53_000450 0.69 +1.3 486,245 - ABIE53_000450 0.69 +0.1 486,261 + ABIE53_000450 0.79 +0.9 486,262 - ABIE53_000450 0.80 -0.2 486,262 - ABIE53_000450 0.80 -1.4 486,262 - ABIE53_000450 0.80 +1.6 486,273 + ABIE53_000450 0.86 +0.7 486,274 - ABIE53_000450 0.87 +2.6 486,351 - +0.3 486,398 - -0.7 486,398 - -1.1 486,398 - -0.5 486,406 + -0.8 486,407 - -0.0 486,437 + +0.6 486,438 - -1.5 486,438 - +1.5 486,438 - +2.3 486,438 - +1.9 486,483 + -1.1 486,483 + +1.1 486,484 - -0.4
Or see this region's nucleotide sequence