Experiment: KB with Bergenin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4932 and Psyr_4933 are separated by 5 nucleotides Psyr_4933 and Psyr_4934 are separated by 341 nucleotides
Psyr_4932: Psyr_4932 - agmatine deiminase, at 5,844,785 to 5,845,891
_4932
Psyr_4933: Psyr_4933 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase, at 5,845,897 to 5,846,775
_4933
Psyr_4934: Psyr_4934 - Aminoglycoside phosphotransferase:Aminotransferase class-III, at 5,847,117 to 5,850,029
_4934
Position (kb) 5845
5846
5847 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5844.981 kb on + strand, within Psyr_4932 at 5844.981 kb on + strand, within Psyr_4932 at 5844.981 kb on + strand, within Psyr_4932 at 5844.981 kb on + strand, within Psyr_4932 at 5844.981 kb on + strand, within Psyr_4932 at 5844.981 kb on + strand, within Psyr_4932 at 5844.982 kb on - strand, within Psyr_4932 at 5844.982 kb on - strand, within Psyr_4932 at 5844.982 kb on - strand, within Psyr_4932 at 5844.982 kb on - strand, within Psyr_4932 at 5844.982 kb on - strand, within Psyr_4932 at 5844.982 kb on - strand, within Psyr_4932 at 5844.982 kb on - strand, within Psyr_4932 at 5845.090 kb on + strand, within Psyr_4932 at 5845.100 kb on - strand, within Psyr_4932 at 5845.139 kb on - strand, within Psyr_4932 at 5845.164 kb on + strand, within Psyr_4932 at 5845.164 kb on + strand, within Psyr_4932 at 5845.164 kb on + strand, within Psyr_4932 at 5845.165 kb on - strand, within Psyr_4932 at 5845.165 kb on - strand, within Psyr_4932 at 5845.165 kb on - strand, within Psyr_4932 at 5845.165 kb on - strand, within Psyr_4932 at 5845.199 kb on + strand, within Psyr_4932 at 5845.200 kb on - strand, within Psyr_4932 at 5845.221 kb on + strand, within Psyr_4932 at 5845.221 kb on + strand, within Psyr_4932 at 5845.222 kb on - strand, within Psyr_4932 at 5845.222 kb on - strand, within Psyr_4932 at 5845.222 kb on - strand, within Psyr_4932 at 5845.222 kb on - strand, within Psyr_4932 at 5845.449 kb on + strand, within Psyr_4932 at 5845.450 kb on - strand, within Psyr_4932 at 5845.450 kb on - strand, within Psyr_4932 at 5845.450 kb on - strand, within Psyr_4932 at 5845.475 kb on + strand, within Psyr_4932 at 5845.476 kb on - strand, within Psyr_4932 at 5845.515 kb on + strand, within Psyr_4932 at 5845.515 kb on + strand, within Psyr_4932 at 5845.516 kb on - strand, within Psyr_4932 at 5845.516 kb on - strand, within Psyr_4932 at 5845.516 kb on - strand, within Psyr_4932 at 5845.686 kb on + strand, within Psyr_4932 at 5845.687 kb on - strand, within Psyr_4932 at 5845.687 kb on - strand, within Psyr_4932 at 5845.687 kb on - strand, within Psyr_4932 at 5845.687 kb on - strand, within Psyr_4932 at 5846.090 kb on + strand, within Psyr_4933 at 5846.090 kb on + strand, within Psyr_4933 at 5846.090 kb on + strand, within Psyr_4933 at 5846.090 kb on + strand, within Psyr_4933 at 5846.091 kb on - strand, within Psyr_4933 at 5846.091 kb on - strand, within Psyr_4933 at 5846.091 kb on - strand, within Psyr_4933 at 5846.105 kb on + strand, within Psyr_4933 at 5846.154 kb on + strand, within Psyr_4933 at 5846.154 kb on + strand, within Psyr_4933 at 5846.154 kb on + strand, within Psyr_4933 at 5846.155 kb on - strand, within Psyr_4933 at 5846.340 kb on - strand, within Psyr_4933 at 5846.384 kb on + strand, within Psyr_4933 at 5846.385 kb on - strand, within Psyr_4933 at 5846.385 kb on - strand, within Psyr_4933 at 5846.387 kb on + strand, within Psyr_4933 at 5846.432 kb on + strand, within Psyr_4933 at 5846.433 kb on + strand, within Psyr_4933 at 5846.433 kb on - strand, within Psyr_4933 at 5846.433 kb on - strand, within Psyr_4933 at 5846.600 kb on + strand, within Psyr_4933 at 5846.628 kb on - strand, within Psyr_4933 at 5846.689 kb on + strand at 5846.690 kb on - strand at 5846.690 kb on - strand at 5846.690 kb on - strand at 5846.781 kb on + strand at 5846.781 kb on + strand at 5846.809 kb on - strand at 5846.809 kb on - strand at 5846.809 kb on - strand at 5846.809 kb on - strand at 5846.816 kb on + strand at 5846.816 kb on + strand at 5846.817 kb on - strand at 5846.817 kb on - strand at 5846.861 kb on - strand at 5846.958 kb on - strand at 5847.049 kb on - strand at 5847.067 kb on - strand at 5847.072 kb on - strand at 5847.090 kb on + strand at 5847.118 kb on + strand at 5847.118 kb on + strand at 5847.118 kb on + strand at 5847.144 kb on + strand at 5847.145 kb on - strand at 5847.217 kb on + strand at 5847.335 kb on - strand at 5847.372 kb on + strand at 5847.372 kb on + strand at 5847.372 kb on + strand at 5847.372 kb on + strand at 5847.372 kb on + strand at 5847.372 kb on + strand at 5847.372 kb on + strand at 5847.372 kb on + strand at 5847.372 kb on + strand at 5847.372 kb on + strand at 5847.372 kb on + strand at 5847.372 kb on + strand at 5847.372 kb on + strand at 5847.372 kb on + strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.373 kb on - strand at 5847.517 kb on + strand, within Psyr_4934 at 5847.518 kb on - strand, within Psyr_4934 at 5847.724 kb on + strand, within Psyr_4934 at 5847.724 kb on + strand, within Psyr_4934 at 5847.724 kb on + strand, within Psyr_4934 at 5847.724 kb on + strand, within Psyr_4934 at 5847.775 kb on + strand, within Psyr_4934
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Bergenin 10 mM remove 5,844,981 + Psyr_4932 0.18 -0.2 5,844,981 + Psyr_4932 0.18 -0.6 5,844,981 + Psyr_4932 0.18 -1.4 5,844,981 + Psyr_4932 0.18 +1.3 5,844,981 + Psyr_4932 0.18 -0.8 5,844,981 + Psyr_4932 0.18 +0.7 5,844,982 - Psyr_4932 0.18 +0.1 5,844,982 - Psyr_4932 0.18 -0.5 5,844,982 - Psyr_4932 0.18 -0.6 5,844,982 - Psyr_4932 0.18 +0.7 5,844,982 - Psyr_4932 0.18 +0.2 5,844,982 - Psyr_4932 0.18 +0.6 5,844,982 - Psyr_4932 0.18 -1.2 5,845,090 + Psyr_4932 0.28 -1.4 5,845,100 - Psyr_4932 0.28 -0.3 5,845,139 - Psyr_4932 0.32 +1.6 5,845,164 + Psyr_4932 0.34 -1.3 5,845,164 + Psyr_4932 0.34 -0.4 5,845,164 + Psyr_4932 0.34 -0.2 5,845,165 - Psyr_4932 0.34 -0.6 5,845,165 - Psyr_4932 0.34 -0.6 5,845,165 - Psyr_4932 0.34 -1.5 5,845,165 - Psyr_4932 0.34 -0.3 5,845,199 + Psyr_4932 0.37 -0.6 5,845,200 - Psyr_4932 0.37 -0.4 5,845,221 + Psyr_4932 0.39 +0.3 5,845,221 + Psyr_4932 0.39 -0.5 5,845,222 - Psyr_4932 0.39 +1.0 5,845,222 - Psyr_4932 0.39 -0.3 5,845,222 - Psyr_4932 0.39 -1.1 5,845,222 - Psyr_4932 0.39 +0.4 5,845,449 + Psyr_4932 0.60 -0.2 5,845,450 - Psyr_4932 0.60 +0.1 5,845,450 - Psyr_4932 0.60 +0.7 5,845,450 - Psyr_4932 0.60 -0.0 5,845,475 + Psyr_4932 0.62 -1.2 5,845,476 - Psyr_4932 0.62 +0.3 5,845,515 + Psyr_4932 0.66 -0.0 5,845,515 + Psyr_4932 0.66 +0.1 5,845,516 - Psyr_4932 0.66 -0.3 5,845,516 - Psyr_4932 0.66 +0.3 5,845,516 - Psyr_4932 0.66 -1.3 5,845,686 + Psyr_4932 0.81 -1.2 5,845,687 - Psyr_4932 0.81 -1.1 5,845,687 - Psyr_4932 0.81 -1.2 5,845,687 - Psyr_4932 0.81 +1.0 5,845,687 - Psyr_4932 0.81 -0.1 5,846,090 + Psyr_4933 0.22 -0.3 5,846,090 + Psyr_4933 0.22 +2.3 5,846,090 + Psyr_4933 0.22 -1.5 5,846,090 + Psyr_4933 0.22 -1.7 5,846,091 - Psyr_4933 0.22 -1.7 5,846,091 - Psyr_4933 0.22 -0.4 5,846,091 - Psyr_4933 0.22 +0.1 5,846,105 + Psyr_4933 0.24 -0.6 5,846,154 + Psyr_4933 0.29 -0.7 5,846,154 + Psyr_4933 0.29 -0.9 5,846,154 + Psyr_4933 0.29 -1.2 5,846,155 - Psyr_4933 0.29 -0.6 5,846,340 - Psyr_4933 0.50 -0.3 5,846,384 + Psyr_4933 0.55 -2.1 5,846,385 - Psyr_4933 0.56 +2.0 5,846,385 - Psyr_4933 0.56 -0.5 5,846,387 + Psyr_4933 0.56 +0.0 5,846,432 + Psyr_4933 0.61 +0.2 5,846,433 + Psyr_4933 0.61 -1.2 5,846,433 - Psyr_4933 0.61 +0.2 5,846,433 - Psyr_4933 0.61 -1.5 5,846,600 + Psyr_4933 0.80 -0.8 5,846,628 - Psyr_4933 0.83 -1.5 5,846,689 + +0.2 5,846,690 - -0.8 5,846,690 - +0.5 5,846,690 - -2.0 5,846,781 + +1.9 5,846,781 + -0.9 5,846,809 - +1.2 5,846,809 - +1.3 5,846,809 - -0.4 5,846,809 - +0.4 5,846,816 + -1.2 5,846,816 + -0.7 5,846,817 - -0.4 5,846,817 - +0.3 5,846,861 - -0.9 5,846,958 - -0.8 5,847,049 - +1.4 5,847,067 - -1.5 5,847,072 - +0.4 5,847,090 + +0.0 5,847,118 + -0.5 5,847,118 + -0.5 5,847,118 + -0.2 5,847,144 + -0.9 5,847,145 - -0.0 5,847,217 + +0.2 5,847,335 - +0.3 5,847,372 + +0.3 5,847,372 + +1.3 5,847,372 + +0.8 5,847,372 + +1.0 5,847,372 + -0.3 5,847,372 + -0.4 5,847,372 + -0.3 5,847,372 + +1.3 5,847,372 + -0.0 5,847,372 + +2.4 5,847,372 + +0.2 5,847,372 + -0.4 5,847,372 + +0.4 5,847,372 + -0.3 5,847,373 - -0.0 5,847,373 - -0.6 5,847,373 - -0.7 5,847,373 - +0.1 5,847,373 - -1.5 5,847,373 - -0.1 5,847,373 - +0.8 5,847,373 - +0.6 5,847,373 - -0.7 5,847,373 - +0.3 5,847,373 - -0.0 5,847,373 - -1.2 5,847,373 - +1.2 5,847,373 - -1.5 5,847,373 - +0.0 5,847,373 - -1.5 5,847,373 - +1.2 5,847,373 - -0.2 5,847,373 - +0.3 5,847,373 - +0.6 5,847,373 - +0.8 5,847,373 - +0.4 5,847,373 - +0.0 5,847,373 - -0.5 5,847,517 + Psyr_4934 0.14 -0.8 5,847,518 - Psyr_4934 0.14 -0.5 5,847,724 + Psyr_4934 0.21 -0.3 5,847,724 + Psyr_4934 0.21 +0.4 5,847,724 + Psyr_4934 0.21 -0.4 5,847,724 + Psyr_4934 0.21 -0.3 5,847,775 + Psyr_4934 0.23 -1.9
Or see this region's nucleotide sequence