Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4309

Experiment: KB with Bergenin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4308 and Psyr_4309 are separated by 100 nucleotidesPsyr_4309 and Psyr_4310 are separated by 123 nucleotides Psyr_4308: Psyr_4308 - conserved hypothetical protein, at 5,133,734 to 5,135,290 _4308 Psyr_4309: Psyr_4309 - hypothetical protein, at 5,135,391 to 5,136,005 _4309 Psyr_4310: Psyr_4310 - hypothetical protein, at 5,136,129 to 5,137,064 _4310 Position (kb) 5135 5136 5137Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5134.427 kb on - strand, within Psyr_4308at 5134.428 kb on + strand, within Psyr_4308at 5134.428 kb on + strand, within Psyr_4308at 5134.428 kb on + strand, within Psyr_4308at 5134.428 kb on + strand, within Psyr_4308at 5134.428 kb on + strand, within Psyr_4308at 5134.428 kb on + strand, within Psyr_4308at 5134.428 kb on + strand, within Psyr_4308at 5134.428 kb on + strand, within Psyr_4308at 5134.428 kb on + strand, within Psyr_4308at 5134.428 kb on + strand, within Psyr_4308at 5134.428 kb on + strand, within Psyr_4308at 5134.429 kb on - strand, within Psyr_4308at 5134.429 kb on - strand, within Psyr_4308at 5134.429 kb on - strand, within Psyr_4308at 5134.429 kb on - strand, within Psyr_4308at 5134.429 kb on - strand, within Psyr_4308at 5134.429 kb on - strand, within Psyr_4308at 5134.429 kb on - strand, within Psyr_4308at 5134.429 kb on - strand, within Psyr_4308at 5134.476 kb on + strand, within Psyr_4308at 5134.554 kb on + strand, within Psyr_4308at 5134.554 kb on + strand, within Psyr_4308at 5134.554 kb on + strand, within Psyr_4308at 5134.554 kb on + strand, within Psyr_4308at 5134.554 kb on + strand, within Psyr_4308at 5134.555 kb on - strand, within Psyr_4308at 5134.555 kb on - strand, within Psyr_4308at 5134.555 kb on - strand, within Psyr_4308at 5134.624 kb on + strand, within Psyr_4308at 5134.624 kb on + strand, within Psyr_4308at 5134.625 kb on - strand, within Psyr_4308at 5134.625 kb on - strand, within Psyr_4308at 5134.625 kb on - strand, within Psyr_4308at 5134.625 kb on - strand, within Psyr_4308at 5134.625 kb on - strand, within Psyr_4308at 5134.625 kb on - strand, within Psyr_4308at 5134.625 kb on - strand, within Psyr_4308at 5134.625 kb on - strand, within Psyr_4308at 5134.645 kb on + strand, within Psyr_4308at 5134.645 kb on + strand, within Psyr_4308at 5134.646 kb on - strand, within Psyr_4308at 5134.646 kb on - strand, within Psyr_4308at 5134.987 kb on - strand, within Psyr_4308at 5134.987 kb on - strand, within Psyr_4308at 5134.987 kb on - strandat 5134.987 kb on - strand, within Psyr_4308at 5135.058 kb on + strand, within Psyr_4308at 5135.059 kb on - strand, within Psyr_4308at 5135.171 kb on - strandat 5135.171 kb on - strandat 5135.171 kb on - strandat 5135.172 kb on + strandat 5135.172 kb on + strandat 5135.173 kb on - strandat 5135.178 kb on + strandat 5135.178 kb on + strandat 5135.178 kb on + strandat 5135.178 kb on + strandat 5135.179 kb on - strandat 5135.179 kb on - strandat 5135.179 kb on - strandat 5135.189 kb on - strandat 5135.206 kb on + strandat 5135.206 kb on + strandat 5135.206 kb on + strandat 5135.207 kb on - strandat 5135.329 kb on - strandat 5135.341 kb on - strandat 5135.373 kb on + strandat 5135.373 kb on + strandat 5135.374 kb on - strandat 5135.386 kb on + strandat 5135.389 kb on + strandat 5135.390 kb on - strandat 5135.390 kb on - strandat 5135.393 kb on - strandat 5135.393 kb on - strandat 5135.420 kb on - strandat 5135.420 kb on - strandat 5135.421 kb on + strandat 5135.425 kb on - strandat 5135.425 kb on - strandat 5135.425 kb on - strandat 5135.470 kb on - strand, within Psyr_4309at 5135.555 kb on + strand, within Psyr_4309at 5135.555 kb on + strand, within Psyr_4309at 5135.556 kb on - strand, within Psyr_4309at 5135.639 kb on + strand, within Psyr_4309at 5135.676 kb on - strand, within Psyr_4309at 5135.707 kb on - strand, within Psyr_4309at 5135.746 kb on + strand, within Psyr_4309at 5135.747 kb on - strand, within Psyr_4309at 5135.747 kb on - strand, within Psyr_4309at 5135.751 kb on + strand, within Psyr_4309at 5135.751 kb on + strand, within Psyr_4309at 5135.753 kb on + strand, within Psyr_4309at 5135.753 kb on + strand, within Psyr_4309at 5135.753 kb on + strand, within Psyr_4309at 5135.754 kb on - strand, within Psyr_4309at 5135.754 kb on - strand, within Psyr_4309at 5135.795 kb on + strand, within Psyr_4309at 5135.924 kb on + strand, within Psyr_4309at 5135.925 kb on - strand, within Psyr_4309at 5135.946 kb on + strandat 5135.947 kb on - strandat 5135.947 kb on - strandat 5135.970 kb on + strandat 5135.971 kb on - strandat 5135.979 kb on + strandat 5136.090 kb on + strandat 5136.091 kb on - strandat 5136.139 kb on + strandat 5136.139 kb on + strandat 5136.140 kb on - strandat 5136.140 kb on - strandat 5136.140 kb on - strandat 5136.144 kb on - strandat 5136.449 kb on + strand, within Psyr_4310at 5136.466 kb on + strand, within Psyr_4310at 5136.467 kb on - strand, within Psyr_4310at 5136.467 kb on - strand, within Psyr_4310at 5136.518 kb on - strand, within Psyr_4310at 5136.570 kb on + strand, within Psyr_4310at 5136.699 kb on - strand, within Psyr_4310at 5136.724 kb on + strand, within Psyr_4310at 5136.725 kb on - strand, within Psyr_4310at 5136.725 kb on - strand, within Psyr_4310at 5136.725 kb on - strand, within Psyr_4310at 5136.725 kb on - strand, within Psyr_4310at 5136.772 kb on + strand, within Psyr_4310at 5136.772 kb on + strand, within Psyr_4310at 5136.772 kb on + strand, within Psyr_4310at 5136.773 kb on - strand, within Psyr_4310at 5136.773 kb on - strand, within Psyr_4310at 5136.820 kb on + strand, within Psyr_4310at 5136.820 kb on + strand, within Psyr_4310at 5136.820 kb on + strand, within Psyr_4310at 5136.821 kb on - strand, within Psyr_4310at 5136.918 kb on + strand, within Psyr_4310at 5136.918 kb on + strand, within Psyr_4310at 5136.919 kb on - strand, within Psyr_4310at 5136.919 kb on - strand, within Psyr_4310at 5136.919 kb on - strand, within Psyr_4310at 5136.922 kb on + strand, within Psyr_4310at 5136.926 kb on - strand, within Psyr_4310at 5136.986 kb on + strandat 5136.987 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Bergenin 10 mM
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5,134,427 - Psyr_4308 0.45 -2.5
5,134,428 + Psyr_4308 0.45 +0.6
5,134,428 + Psyr_4308 0.45 -0.5
5,134,428 + Psyr_4308 0.45 +0.2
5,134,428 + Psyr_4308 0.45 +0.8
5,134,428 + Psyr_4308 0.45 +0.7
5,134,428 + Psyr_4308 0.45 -0.6
5,134,428 + Psyr_4308 0.45 +0.8
5,134,428 + Psyr_4308 0.45 +0.9
5,134,428 + Psyr_4308 0.45 -0.1
5,134,428 + Psyr_4308 0.45 +0.1
5,134,428 + Psyr_4308 0.45 -0.7
5,134,429 - Psyr_4308 0.45 +0.8
5,134,429 - Psyr_4308 0.45 +0.2
5,134,429 - Psyr_4308 0.45 -0.2
5,134,429 - Psyr_4308 0.45 -0.0
5,134,429 - Psyr_4308 0.45 -0.3
5,134,429 - Psyr_4308 0.45 +0.8
5,134,429 - Psyr_4308 0.45 -2.2
5,134,429 - Psyr_4308 0.45 -1.4
5,134,476 + Psyr_4308 0.48 -0.5
5,134,554 + Psyr_4308 0.53 +0.5
5,134,554 + Psyr_4308 0.53 -0.9
5,134,554 + Psyr_4308 0.53 +0.8
5,134,554 + Psyr_4308 0.53 +1.1
5,134,554 + Psyr_4308 0.53 -0.6
5,134,555 - Psyr_4308 0.53 -1.0
5,134,555 - Psyr_4308 0.53 +0.6
5,134,555 - Psyr_4308 0.53 -0.6
5,134,624 + Psyr_4308 0.57 +0.4
5,134,624 + Psyr_4308 0.57 -0.5
5,134,625 - Psyr_4308 0.57 +1.1
5,134,625 - Psyr_4308 0.57 -1.5
5,134,625 - Psyr_4308 0.57 -0.4
5,134,625 - Psyr_4308 0.57 +0.0
5,134,625 - Psyr_4308 0.57 -1.5
5,134,625 - Psyr_4308 0.57 -0.6
5,134,625 - Psyr_4308 0.57 +0.1
5,134,625 - Psyr_4308 0.57 +0.7
5,134,645 + Psyr_4308 0.59 +0.5
5,134,645 + Psyr_4308 0.59 -1.7
5,134,646 - Psyr_4308 0.59 -0.7
5,134,646 - Psyr_4308 0.59 -0.3
5,134,987 - Psyr_4308 0.80 -0.8
5,134,987 - Psyr_4308 0.80 -0.5
5,134,987 - -0.2
5,134,987 - Psyr_4308 0.80 -0.4
5,135,058 + Psyr_4308 0.85 -1.4
5,135,059 - Psyr_4308 0.85 -0.9
5,135,171 - +0.3
5,135,171 - -1.4
5,135,171 - -0.4
5,135,172 + +0.3
5,135,172 + -0.6
5,135,173 - +0.1
5,135,178 + +0.2
5,135,178 + -0.1
5,135,178 + -0.3
5,135,178 + -0.1
5,135,179 - -1.4
5,135,179 - +0.3
5,135,179 - +0.4
5,135,189 - -1.4
5,135,206 + -0.6
5,135,206 + +2.3
5,135,206 + -0.1
5,135,207 - -0.9
5,135,329 - +0.1
5,135,341 - +0.6
5,135,373 + +0.7
5,135,373 + -2.8
5,135,374 - -0.5
5,135,386 + -2.1
5,135,389 + -2.1
5,135,390 - -2.1
5,135,390 - +0.1
5,135,393 - -2.4
5,135,393 - -1.5
5,135,420 - -0.1
5,135,420 - +0.4
5,135,421 + -1.2
5,135,425 - -1.0
5,135,425 - -1.0
5,135,425 - -0.5
5,135,470 - Psyr_4309 0.13 -0.1
5,135,555 + Psyr_4309 0.27 +0.1
5,135,555 + Psyr_4309 0.27 +0.8
5,135,556 - Psyr_4309 0.27 +0.1
5,135,639 + Psyr_4309 0.40 -1.5
5,135,676 - Psyr_4309 0.46 -3.6
5,135,707 - Psyr_4309 0.51 -0.3
5,135,746 + Psyr_4309 0.58 +1.4
5,135,747 - Psyr_4309 0.58 +0.8
5,135,747 - Psyr_4309 0.58 -0.9
5,135,751 + Psyr_4309 0.59 -0.5
5,135,751 + Psyr_4309 0.59 -1.2
5,135,753 + Psyr_4309 0.59 -3.4
5,135,753 + Psyr_4309 0.59 -1.8
5,135,753 + Psyr_4309 0.59 +0.1
5,135,754 - Psyr_4309 0.59 -1.2
5,135,754 - Psyr_4309 0.59 -1.4
5,135,795 + Psyr_4309 0.66 -2.5
5,135,924 + Psyr_4309 0.87 +0.3
5,135,925 - Psyr_4309 0.87 -0.8
5,135,946 + +0.5
5,135,947 - +0.0
5,135,947 - -0.4
5,135,970 + +0.2
5,135,971 - -1.6
5,135,979 + +0.7
5,136,090 + +0.4
5,136,091 - +1.7
5,136,139 + -0.4
5,136,139 + -1.1
5,136,140 - -0.8
5,136,140 - -2.1
5,136,140 - +1.4
5,136,144 - +0.6
5,136,449 + Psyr_4310 0.34 +0.5
5,136,466 + Psyr_4310 0.36 +0.3
5,136,467 - Psyr_4310 0.36 +0.1
5,136,467 - Psyr_4310 0.36 -0.5
5,136,518 - Psyr_4310 0.42 -0.4
5,136,570 + Psyr_4310 0.47 -0.7
5,136,699 - Psyr_4310 0.61 +0.5
5,136,724 + Psyr_4310 0.64 -0.7
5,136,725 - Psyr_4310 0.64 +1.3
5,136,725 - Psyr_4310 0.64 +0.1
5,136,725 - Psyr_4310 0.64 -0.4
5,136,725 - Psyr_4310 0.64 +0.3
5,136,772 + Psyr_4310 0.69 +1.3
5,136,772 + Psyr_4310 0.69 +0.0
5,136,772 + Psyr_4310 0.69 -0.5
5,136,773 - Psyr_4310 0.69 -0.1
5,136,773 - Psyr_4310 0.69 +0.8
5,136,820 + Psyr_4310 0.74 -0.7
5,136,820 + Psyr_4310 0.74 -1.9
5,136,820 + Psyr_4310 0.74 -0.5
5,136,821 - Psyr_4310 0.74 -1.6
5,136,918 + Psyr_4310 0.84 +0.8
5,136,918 + Psyr_4310 0.84 -0.0
5,136,919 - Psyr_4310 0.84 -0.8
5,136,919 - Psyr_4310 0.84 -0.7
5,136,919 - Psyr_4310 0.84 +2.1
5,136,922 + Psyr_4310 0.85 -1.0
5,136,926 - Psyr_4310 0.85 -0.6
5,136,986 + +1.0
5,136,987 - +0.1

Or see this region's nucleotide sequence