Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3089

Experiment: KB with Bergenin 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Bergenin 10 mM
3,696,053	+		Psyr_3088	0.24	-2.1
3,696,084	-		Psyr_3088	0.26	-2.1
3,696,097	+		Psyr_3088	0.27	+0.1
3,696,102	+		Psyr_3088	0.28	-0.1
3,696,103	-		Psyr_3088	0.28	-0.6
3,696,151	+		Psyr_3088	0.32	+0.9
3,696,247	+		Psyr_3088	0.40	+0.4
3,696,325	-		Psyr_3088	0.46	+1.5
3,696,329	-		Psyr_3088	0.47	+0.9
3,696,425	+		Psyr_3088	0.55	+0.2
3,696,494	+		Psyr_3088	0.60	-0.3
3,696,495	-		Psyr_3088	0.60	-0.7
3,696,615	+		Psyr_3088	0.70	-0.3
3,696,616	-		Psyr_3088	0.70	+0.7
3,696,616	-		Psyr_3088	0.70	-0.3
3,696,618	+		Psyr_3088	0.71	+0.7
3,696,865	+				+0.3
3,696,966	-				-0.6
3,696,966	-				+0.4
3,697,050	+				-0.9
3,697,054	+				-1.5
3,697,054	+				+0.1
3,697,113	-				+1.8
3,697,114	+				-3.1
3,697,376	-				-1.0
3,697,419	+				-2.2
3,697,419	+				+1.5
3,697,531	-				+0.7
3,697,531	-				+0.3
3,697,531	-				-0.1
3,697,538	-				-0.4
3,697,645	+				-1.6
3,697,680	-				-0.5
3,697,748	+				-2.1
3,697,749	-				+0.5
3,697,824	-				-0.7
3,697,888	-		Psyr_3089	0.11	-0.0
3,698,022	-		Psyr_3089	0.12	-0.1
3,698,022	-		Psyr_3089	0.12	+0.9
3,698,051	+		Psyr_3089	0.13	-1.6
3,698,248	+		Psyr_3089	0.15	-2.6
3,698,441	+		Psyr_3089	0.18	-1.5
3,698,442	-				+0.5
3,698,442	-		Psyr_3089	0.18	-0.6
3,698,442	-		Psyr_3089	0.18	-2.0
3,698,554	-		Psyr_3089	0.19	-0.4
3,698,581	+		Psyr_3089	0.19	-0.4
3,698,582	-		Psyr_3089	0.19	+1.7
3,698,583	+		Psyr_3089	0.19	-0.1
3,698,610	+		Psyr_3089	0.20	-1.4
3,699,024	+		Psyr_3089	0.25	+0.1
3,699,050	+		Psyr_3089	0.25	-1.9
3,699,050	+		Psyr_3089	0.25	+0.3
3,699,050	+		Psyr_3089	0.25	-2.1
3,699,050	+		Psyr_3089	0.25	-1.6
3,699,051	-		Psyr_3089	0.25	+0.2
3,699,051	-		Psyr_3089	0.25	-1.5
3,699,051	-		Psyr_3089	0.25	+0.9
3,699,051	-		Psyr_3089	0.25	-0.8
3,699,200	+		Psyr_3089	0.27	-1.4
3,699,200	+		Psyr_3089	0.27	-1.4
3,699,200	+				-1.6
3,699,255	+		Psyr_3089	0.28	-1.1
3,699,384	+		Psyr_3089	0.29	-2.1
3,699,385	-		Psyr_3089	0.29	-0.3
3,699,491	+		Psyr_3089	0.31	-0.6
3,699,498	+		Psyr_3089	0.31	-2.1
3,699,499	-		Psyr_3089	0.31	-0.1
3,699,499	-		Psyr_3089	0.31	-0.9
3,699,647	+		Psyr_3089	0.32	-2.2
3,699,648	-		Psyr_3089	0.32	-2.2
3,699,666	-		Psyr_3089	0.33	-0.4
3,699,825	+		Psyr_3089	0.35	-0.4
3,699,905	+		Psyr_3089	0.36	+0.9
3,699,905	+		Psyr_3089	0.36	-1.9
3,699,905	+		Psyr_3089	0.36	-1.1
3,699,906	-		Psyr_3089	0.36	+0.9
3,699,906	-		Psyr_3089	0.36	-0.2
3,699,906	-		Psyr_3089	0.36	+1.3
3,700,003	+		Psyr_3089	0.37	-1.1
3,700,096	+		Psyr_3089	0.38	+0.6
3,700,147	+		Psyr_3089	0.39	-1.6
3,700,224	+		Psyr_3089	0.40	-1.1
3,700,227	-		Psyr_3089	0.40	+0.7
3,700,227	-		Psyr_3089	0.40	-0.2
3,700,227	-		Psyr_3089	0.40	+0.5
3,700,227	-		Psyr_3089	0.40	-0.5
3,700,351	-		Psyr_3089	0.41	-0.1
3,700,487	-		Psyr_3089	0.43	-1.6
3,700,487	-		Psyr_3089	0.43	+1.9
3,700,573	+		Psyr_3089	0.44	+0.2
3,700,573	+		Psyr_3089	0.44	-3.3
3,700,573	+		Psyr_3089	0.44	-0.6
3,700,648	-		Psyr_3089	0.45	-1.2
3,700,649	+		Psyr_3089	0.45	-0.6
3,700,649	+		Psyr_3089	0.45	-0.3
3,700,649	+		Psyr_3089	0.45	-2.4
3,700,650	-		Psyr_3089	0.45	-1.1
3,700,650	-		Psyr_3089	0.45	-2.8
3,700,650	-		Psyr_3089	0.45	-1.2
3,700,650	-		Psyr_3089	0.45	-0.5
3,700,650	-		Psyr_3089	0.45	-0.4
3,700,681	+		Psyr_3089	0.45	-1.1
3,700,681	+		Psyr_3089	0.45	-0.5
3,700,682	-		Psyr_3089	0.45	-0.6
3,700,700	+		Psyr_3089	0.46	+0.3
3,700,700	+		Psyr_3089	0.46	+1.4
3,700,701	-		Psyr_3089	0.46	-0.1
3,700,728	+		Psyr_3089	0.46	-1.1
3,700,728	+		Psyr_3089	0.46	-0.5
3,700,790	-		Psyr_3089	0.47	+0.9
3,700,790	-		Psyr_3089	0.47	+1.5
3,700,830	-		Psyr_3089	0.47	-0.1
3,700,830	-		Psyr_3089	0.47	-0.7
3,700,876	+		Psyr_3089	0.48	-0.6
3,701,035	+		Psyr_3089	0.50	-0.7
3,701,036	-		Psyr_3089	0.50	+0.5
3,701,075	-		Psyr_3089	0.50	-1.0
3,701,078	-		Psyr_3089	0.50	+0.6
3,701,078	-		Psyr_3089	0.50	+0.6
3,701,095	+		Psyr_3089	0.50	-1.1
3,701,120	+		Psyr_3089	0.51	+0.3
3,701,121	-		Psyr_3089	0.51	-1.6
3,701,123	+		Psyr_3089	0.51	-2.5
3,701,124	-		Psyr_3089	0.51	-1.6
3,701,152	+		Psyr_3089	0.51	-0.1
3,701,154	+		Psyr_3089	0.51	-3.6
3,701,155	-		Psyr_3089	0.51	-1.8
3,701,158	+		Psyr_3089	0.51	-0.1
3,701,159	-		Psyr_3089	0.51	-1.8
3,701,159	-		Psyr_3089	0.51	+0.9
3,701,261	+		Psyr_3089	0.52	-1.4
3,701,333	+		Psyr_3089	0.53	-1.1
3,701,338	+		Psyr_3089	0.53	-2.4
3,701,506	+		Psyr_3089	0.55	-1.6
3,701,562	+		Psyr_3089	0.56	-2.1
3,701,623	+		Psyr_3089	0.57	-2.2
3,701,674	+		Psyr_3089	0.58	-2.1
3,701,674	+		Psyr_3089	0.58	-1.1
3,701,675	-		Psyr_3089	0.58	+0.9
3,701,728	-		Psyr_3089	0.58	-0.1
3,701,742	+		Psyr_3089	0.58	-1.1
3,701,743	-		Psyr_3089	0.58	-2.2
3,701,744	+		Psyr_3089	0.58	-1.0
3,701,744	+		Psyr_3089	0.58	-1.2
3,701,744	+		Psyr_3089	0.58	-2.2
3,701,744	+		Psyr_3089	0.58	-1.4
3,701,745	-		Psyr_3089	0.58	-0.8
3,701,745	-		Psyr_3089	0.58	+1.4
3,701,799	+		Psyr_3089	0.59	-1.2
3,701,799	+		Psyr_3089	0.59	-1.4
3,701,799	+		Psyr_3089	0.59	-1.4
3,701,800	-		Psyr_3089	0.59	+3.1
3,701,800	-		Psyr_3089	0.59	-0.2
3,701,800	-		Psyr_3089	0.59	-1.2
3,701,800	-		Psyr_3089	0.59	-1.2
3,701,985	+		Psyr_3089	0.61	-1.6
3,701,985	+		Psyr_3089	0.61	-1.1
3,701,986	-		Psyr_3089	0.61	+0.1
3,702,119	+		Psyr_3089	0.63	-0.6
3,702,120	-		Psyr_3089	0.63	-0.4
3,702,175	+		Psyr_3089	0.64	-0.6
3,702,176	-		Psyr_3089	0.64	-0.5
3,702,176	-		Psyr_3089	0.64	-1.6
3,702,201	-		Psyr_3089	0.64	-0.1
3,702,201	-		Psyr_3089	0.64	-0.4
3,702,256	-		Psyr_3089	0.65	-0.9
3,702,362	+		Psyr_3089	0.66	-1.3
3,702,363	-		Psyr_3089	0.66	-0.1
3,702,363	-		Psyr_3089	0.66	+1.9
3,702,386	+		Psyr_3089	0.66	-3.3
3,702,387	-		Psyr_3089	0.66	-0.8
3,702,390	+		Psyr_3089	0.66	-1.4
3,702,438	+		Psyr_3089	0.67	-2.2
3,702,438	+		Psyr_3089	0.67	-0.4
3,702,438	+		Psyr_3089	0.67	-0.6
3,702,439	-		Psyr_3089	0.67	-0.5
3,702,564	-		Psyr_3089	0.69	+1.1
3,702,564	-		Psyr_3089	0.69	+0.1
3,702,662	+		Psyr_3089	0.70	-2.1
3,702,662	+				-0.6
3,702,663	-		Psyr_3089	0.70	+0.7
3,702,663	-		Psyr_3089	0.70	-2.0
3,702,734	-		Psyr_3089	0.71	+0.8
3,702,766	-		Psyr_3089	0.71	-2.4
3,702,766	-		Psyr_3089	0.71	+0.2
3,702,768	-		Psyr_3089	0.71	+0.4
3,702,768	-		Psyr_3089	0.71	-0.6
3,702,768	-		Psyr_3089	0.71	-0.1
3,702,800	-		Psyr_3089	0.72	-0.4
3,702,800	-		Psyr_3089	0.72	-1.6
3,702,826	+		Psyr_3089	0.72	+0.9
3,702,826	+		Psyr_3089	0.72	+0.9
3,702,853	+		Psyr_3089	0.72	-0.6
3,702,853	+		Psyr_3089	0.72	-3.1
3,702,875	+		Psyr_3089	0.72	-0.1
3,702,876	-		Psyr_3089	0.72	-0.1
3,702,876	-		Psyr_3089	0.72	-1.6
3,702,938	-		Psyr_3089	0.73	+0.4
3,703,002	-		Psyr_3089	0.74	-0.5
3,703,002	-		Psyr_3089	0.74	-3.0
3,703,088	-		Psyr_3089	0.75	-0.6
3,703,123	-		Psyr_3089	0.76	+0.0
3,703,210	+		Psyr_3089	0.77	-1.1
3,703,244	+		Psyr_3089	0.77	+2.5
3,703,380	+				-0.6
3,703,380	+		Psyr_3089	0.79	-3.2
3,703,380	+		Psyr_3089	0.79	-0.1
3,703,380	+		Psyr_3089	0.79	-1.6
3,703,380	+		Psyr_3089	0.79	-2.4
3,703,380	+		Psyr_3089	0.79	+0.6
3,703,380	+		Psyr_3089	0.79	-2.1
3,703,381	-		Psyr_3089	0.79	+2.3
3,703,384	+		Psyr_3089	0.79	-1.6
3,703,384	+		Psyr_3089	0.79	+0.4
3,703,498	+		Psyr_3089	0.80	-0.2
3,703,498	+		Psyr_3089	0.80	-1.6
3,703,625	+		Psyr_3089	0.82	+0.3
3,703,626	-		Psyr_3089	0.82	-0.1
3,703,626	-		Psyr_3089	0.82	-1.1
3,703,640	+		Psyr_3089	0.82	-1.1
3,703,641	-		Psyr_3089	0.82	+0.1
3,703,641	-		Psyr_3089	0.82	-0.3
3,703,641	-		Psyr_3089	0.82	+1.9
3,703,669	-		Psyr_3089	0.82	+0.1
3,703,669	-		Psyr_3089	0.82	-0.3
3,703,676	-		Psyr_3089	0.82	-1.1
3,703,676	-		Psyr_3089	0.82	+1.1
3,703,738	+		Psyr_3089	0.83	-2.6
3,703,814	-		Psyr_3089	0.84	-0.3
3,703,907	-		Psyr_3089	0.85	+0.6
3,703,923	+		Psyr_3089	0.85	-1.6
3,703,945	-		Psyr_3089	0.86	-0.1
3,704,042	+		Psyr_3089	0.87	-2.4
3,704,042	+		Psyr_3089	0.87	+0.5
3,704,045	-		Psyr_3089	0.87	-0.3
3,704,045	-		Psyr_3089	0.87	-1.1
3,704,052	+		Psyr_3089	0.87	-1.1
3,704,192	-		Psyr_3089	0.89	-0.7
3,704,310	+				+2.3
3,704,334	-				-0.5
3,704,464	+				-2.9
3,704,509	-				+0.4
3,704,590	+				-1.3
3,704,685	+				-1.6
3,704,685	+				+0.6
3,704,706	+				-0.9
3,704,706	+				-3.2
3,704,716	-				-1.3
3,704,943	+				-0.4
3,705,010	+				+0.8
3,705,029	+				-1.2
3,705,239	+		Psyr_3090	0.21	-1.6
3,705,348	+		Psyr_3090	0.37	-1.1
3,705,551	+		Psyr_3090	0.68	-0.5
3,705,555	+		Psyr_3090	0.68	-2.9
3,705,556	-		Psyr_3090	0.68	-0.4
3,705,605	+		Psyr_3090	0.76	+0.5
3,705,621	-		Psyr_3090	0.78	-0.6
3,705,737	+				+0.0
3,705,820	+				-0.1
3,705,843	-				-1.4
3,705,858	-				-0.8
3,705,933	-				+0.4
3,705,958	-				-0.1
3,706,035	+				-1.4
3,706,055	-				-2.5
3,706,055	-				-1.4