Experiment: KB with Bergenin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2893 and Psyr_2894 are separated by 496 nucleotides Psyr_2894 and Psyr_RNA45 are separated by 91 nucleotides Psyr_RNA45 and Psyr_2895 are separated by 66 nucleotides Psyr_2895 and Psyr_2896 are separated by 32 nucleotides
Psyr_2893: Psyr_2893 - probable lipoprotein, at 3,472,035 to 3,472,703
_2893
Psyr_2894: Psyr_2894 - conserved hypothetical protein, at 3,473,200 to 3,473,658
_2894
Psyr_RNA45: Psyr_RNA45 - tRNA-Gly, at 3,473,750 to 3,473,825
_RNA45
Psyr_2895: Psyr_2895 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 3,473,892 to 3,474,452
_2895
Psyr_2896: Psyr_2896 - Excinuclease ABC subunit C, at 3,474,485 to 3,476,308
_2896
Position (kb) 3473
3474 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 3472.205 kb on - strand, within Psyr_2893 at 3472.205 kb on - strand, within Psyr_2893 at 3472.232 kb on + strand, within Psyr_2893 at 3472.261 kb on + strand, within Psyr_2893 at 3472.261 kb on + strand, within Psyr_2893 at 3472.261 kb on + strand, within Psyr_2893 at 3472.261 kb on + strand, within Psyr_2893 at 3472.261 kb on + strand, within Psyr_2893 at 3472.262 kb on - strand, within Psyr_2893 at 3472.262 kb on - strand, within Psyr_2893 at 3472.262 kb on - strand, within Psyr_2893 at 3472.262 kb on - strand, within Psyr_2893 at 3472.352 kb on + strand, within Psyr_2893 at 3472.484 kb on - strand, within Psyr_2893 at 3472.516 kb on + strand, within Psyr_2893 at 3472.543 kb on + strand, within Psyr_2893 at 3472.544 kb on - strand, within Psyr_2893 at 3472.548 kb on - strand, within Psyr_2893 at 3472.548 kb on - strand, within Psyr_2893 at 3472.556 kb on + strand, within Psyr_2893 at 3472.557 kb on - strand, within Psyr_2893 at 3472.557 kb on - strand, within Psyr_2893 at 3472.605 kb on + strand, within Psyr_2893 at 3472.605 kb on + strand, within Psyr_2893 at 3472.692 kb on - strand at 3472.696 kb on + strand at 3472.697 kb on - strand at 3472.730 kb on - strand at 3472.816 kb on + strand at 3472.816 kb on + strand at 3472.876 kb on + strand at 3473.072 kb on + strand at 3473.073 kb on - strand at 3473.073 kb on - strand at 3473.073 kb on - strand at 3473.083 kb on + strand at 3473.083 kb on + strand at 3473.084 kb on - strand at 3473.105 kb on + strand at 3473.166 kb on + strand at 3473.166 kb on + strand at 3473.166 kb on + strand at 3473.167 kb on - strand at 3473.193 kb on - strand at 3473.203 kb on + strand at 3473.203 kb on + strand at 3473.234 kb on - strand at 3473.545 kb on + strand, within Psyr_2894 at 3473.546 kb on - strand, within Psyr_2894 at 3473.656 kb on + strand at 3473.656 kb on + strand at 3473.657 kb on - strand at 3473.657 kb on - strand at 3474.508 kb on - strand at 3474.508 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Bergenin 10 mM remove 3,472,205 - Psyr_2893 0.25 -0.1 3,472,205 - Psyr_2893 0.25 -0.4 3,472,232 + Psyr_2893 0.29 -0.5 3,472,261 + Psyr_2893 0.34 -0.5 3,472,261 + Psyr_2893 0.34 -0.1 3,472,261 + Psyr_2893 0.34 +0.6 3,472,261 + Psyr_2893 0.34 +0.1 3,472,261 + Psyr_2893 0.34 -0.4 3,472,262 - Psyr_2893 0.34 +0.6 3,472,262 - Psyr_2893 0.34 +0.2 3,472,262 - Psyr_2893 0.34 +0.7 3,472,262 - Psyr_2893 0.34 +0.9 3,472,352 + Psyr_2893 0.47 +0.5 3,472,484 - Psyr_2893 0.67 +0.4 3,472,516 + Psyr_2893 0.72 +0.6 3,472,543 + Psyr_2893 0.76 -0.2 3,472,544 - Psyr_2893 0.76 -0.6 3,472,548 - Psyr_2893 0.77 +0.5 3,472,548 - Psyr_2893 0.77 +0.1 3,472,556 + Psyr_2893 0.78 -1.3 3,472,557 - Psyr_2893 0.78 -0.2 3,472,557 - Psyr_2893 0.78 -0.9 3,472,605 + Psyr_2893 0.85 -2.4 3,472,605 + Psyr_2893 0.85 -0.5 3,472,692 - +0.6 3,472,696 + +1.1 3,472,697 - +0.5 3,472,730 - -1.1 3,472,816 + -0.8 3,472,816 + +0.0 3,472,876 + -1.0 3,473,072 + -3.4 3,473,073 - -2.1 3,473,073 - -1.9 3,473,073 - -0.2 3,473,083 + -1.1 3,473,083 + +0.4 3,473,084 - -3.2 3,473,105 + +0.8 3,473,166 + +0.3 3,473,166 + +0.7 3,473,166 + -0.2 3,473,167 - +0.1 3,473,193 - -3.9 3,473,203 + +0.9 3,473,203 + +0.8 3,473,234 - -1.9 3,473,545 + Psyr_2894 0.75 -0.3 3,473,546 - Psyr_2894 0.75 -1.7 3,473,656 + +0.1 3,473,656 + -0.2 3,473,657 - -0.1 3,473,657 - -1.4 3,474,508 - -0.7 3,474,508 - -0.8
Or see this region's nucleotide sequence