Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2661

Experiment: KB with Bergenin 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Bergenin 10 mM
3,230,973	-		Psyr_2659	0.74	-1.9
3,231,068	-		Psyr_2659	0.81	-0.6
3,231,086	+		Psyr_2659	0.83	-0.5
3,231,087	-		Psyr_2659	0.83	+0.2
3,231,097	+		Psyr_2659	0.83	-0.0
3,231,097	+		Psyr_2659	0.83	-0.3
3,231,097	+		Psyr_2659	0.83	-0.3
3,231,122	+		Psyr_2659	0.85	-0.0
3,231,122	+		Psyr_2659	0.85	-2.0
3,231,165	+		Psyr_2659	0.89	-2.5
3,231,166	-		Psyr_2659	0.89	-1.5
3,231,286	+				-0.8
3,231,287	-				-1.5
3,231,317	-				+1.5
3,231,317	-				-0.2
3,231,328	+				-0.6
3,231,328	+				-1.5
3,231,404	+				-0.9
3,231,404	+				-0.7
3,231,405	-				+0.1
3,231,408	+				+0.3
3,231,408	+				-0.5
3,231,408	+				-2.5
3,231,408	+				+0.3
3,231,408	+				+0.8
3,231,409	-				-0.2
3,231,409	-				-0.6
3,231,409	-				-0.5
3,231,428	+				-1.5
3,231,429	-				-0.4
3,231,463	-				+0.4
3,231,463	-				-2.0
3,231,509	+		Psyr_2660	0.17	-0.3
3,231,510	-		Psyr_2660	0.17	+0.1
3,231,510	-		Psyr_2660	0.17	+0.7
3,231,564	-		Psyr_2660	0.37	+1.1
3,231,564	-		Psyr_2660	0.37	-0.3
3,231,639	+		Psyr_2660	0.63	-2.6
3,231,640	-		Psyr_2660	0.63	+0.1
3,231,648	+		Psyr_2660	0.66	-0.5
3,231,648	+		Psyr_2660	0.66	-0.7
3,231,648	+		Psyr_2660	0.66	-0.6
3,231,648	+		Psyr_2660	0.66	+1.1
3,231,648	+				+0.1
3,231,648	+		Psyr_2660	0.66	-0.3
3,231,648	+		Psyr_2660	0.66	-1.5
3,231,648	+		Psyr_2660	0.66	+0.2
3,231,648	+		Psyr_2660	0.66	+0.9
3,231,648	+		Psyr_2660	0.66	+1.1
3,231,648	+		Psyr_2660	0.66	+0.5
3,231,648	+		Psyr_2660	0.66	-0.8
3,231,648	+		Psyr_2660	0.66	+1.1
3,231,648	+		Psyr_2660	0.66	-0.9
3,231,648	+		Psyr_2660	0.66	-1.7
3,231,648	+		Psyr_2660	0.66	+1.3
3,231,648	+		Psyr_2660	0.66	-0.1
3,231,649	-		Psyr_2660	0.67	-0.8
3,231,649	-		Psyr_2660	0.67	+0.7
3,231,649	-		Psyr_2660	0.67	-1.0
3,231,649	-		Psyr_2660	0.67	-2.0
3,231,649	-		Psyr_2660	0.67	-0.0
3,231,649	-		Psyr_2660	0.67	-1.1
3,231,649	-		Psyr_2660	0.67	-2.5
3,231,649	-		Psyr_2660	0.67	-0.7
3,231,649	-		Psyr_2660	0.67	-0.3
3,231,649	-		Psyr_2660	0.67	+0.7
3,231,649	-		Psyr_2660	0.67	-0.6
3,231,649	-		Psyr_2660	0.67	+0.4
3,231,680	+		Psyr_2660	0.78	-0.5
3,231,681	-		Psyr_2660	0.78	-1.2
3,231,681	-		Psyr_2660	0.78	-0.7
3,231,718	+				-0.0
3,231,719	-				-1.5
3,231,735	-				+0.2
3,231,735	-				+0.1
3,231,833	+				-1.0
3,231,849	+				-0.5
3,231,850	-				-0.3
3,231,877	+				-0.1
3,231,878	-				+1.7
3,231,878	-				+1.1
3,231,911	+				-0.1
3,231,911	+				-0.8
3,231,911	+				-0.0
3,231,911	+				-0.1
3,231,912	-				+0.1
3,231,912	-				+0.1
3,231,912	-				+0.7
3,231,912	-				-0.4
3,231,918	+				+0.3
3,231,942	+		Psyr_2661	0.10	-0.2
3,232,022	-		Psyr_2661	0.17	+0.9
3,232,109	-		Psyr_2661	0.26	-1.0
3,232,192	+		Psyr_2661	0.33	-1.0
3,232,193	-		Psyr_2661	0.33	+0.7
3,232,270	+		Psyr_2661	0.40	-1.2
3,232,270	+		Psyr_2661	0.40	-0.8
3,232,270	+		Psyr_2661	0.40	-0.8
3,232,270	+		Psyr_2661	0.40	-1.1
3,232,271	-		Psyr_2661	0.40	+0.5
3,232,271	-		Psyr_2661	0.40	-0.0
3,232,271	-		Psyr_2661	0.40	-0.3
3,232,271	-		Psyr_2661	0.40	-0.4
3,232,271	-		Psyr_2661	0.40	-2.5
3,232,303	+		Psyr_2661	0.43	-0.5
3,232,303	+		Psyr_2661	0.43	+1.0
3,232,304	-		Psyr_2661	0.43	+0.7
3,232,326	+		Psyr_2661	0.45	-0.2
3,232,326	+		Psyr_2661	0.45	+0.3
3,232,327	-		Psyr_2661	0.46	+1.1
3,232,327	-		Psyr_2661	0.46	-2.9
3,232,327	-		Psyr_2661	0.46	-1.6
3,232,327	-		Psyr_2661	0.46	-0.1
3,232,375	+		Psyr_2661	0.50	+0.1
3,232,376	-		Psyr_2661	0.50	-0.3
3,232,468	+		Psyr_2661	0.59	+0.2
3,232,468	+		Psyr_2661	0.59	+0.3
3,232,469	-		Psyr_2661	0.59	-2.2
3,232,494	+		Psyr_2661	0.61	+0.4
3,232,494	+		Psyr_2661	0.61	-0.6
3,232,494	+		Psyr_2661	0.61	+0.1
3,232,499	-		Psyr_2661	0.61	+1.1
3,232,519	-		Psyr_2661	0.63	-0.3
3,232,564	+		Psyr_2661	0.67	-0.5
3,232,607	-		Psyr_2661	0.71	+1.7
3,232,649	-		Psyr_2661	0.75	-1.3
3,232,649	-		Psyr_2661	0.75	-1.8
3,232,649	-		Psyr_2661	0.75	-0.9
3,232,727	+		Psyr_2661	0.82	-2.2
3,232,801	-		Psyr_2661	0.89	-0.6
3,232,888	+				+1.9
3,232,888	+				-0.5
3,232,889	-				+0.1
3,232,947	+				+3.7
3,232,948	-				-0.9
3,232,964	+				-0.0
3,232,964	+				-0.3
3,232,964	+				+1.7
3,232,964	+				-1.1
3,232,965	-				-1.3
3,232,965	-				+0.8
3,232,965	-				-0.1
3,232,984	+				-0.8
3,232,985	-				+0.8
3,232,985	-				+0.6
3,232,985	-				-0.5
3,232,993	+				+0.1
3,232,995	+				+2.7
3,232,995	+				+0.6
3,232,996	-				+0.6
3,232,996	-				+0.6
3,233,055	-		Psyr_2662	0.14	+1.7
3,233,069	+		Psyr_2662	0.17	-0.8
3,233,070	-		Psyr_2662	0.17	+1.0
3,233,072	-		Psyr_2662	0.17	+0.1
3,233,166	+		Psyr_2662	0.34	-0.8
3,233,378	+		Psyr_2662	0.72	+0.1
3,233,378	+		Psyr_2662	0.72	-0.9
3,233,378	+		Psyr_2662	0.72	-1.4
3,233,379	-		Psyr_2662	0.73	-0.7
3,233,379	-		Psyr_2662	0.73	+0.3
3,233,379	-		Psyr_2662	0.73	-0.7
3,233,379	-		Psyr_2662	0.73	+1.7
3,233,380	+		Psyr_2662	0.73	-1.0
3,233,381	-		Psyr_2662	0.73	-0.0
3,233,381	-		Psyr_2662	0.73	-0.9
3,233,381	-		Psyr_2662	0.73	+0.2
3,233,388	-		Psyr_2662	0.74	-1.2
3,233,388	-		Psyr_2662	0.74	-0.2
3,233,388	-		Psyr_2662	0.74	-2.2
3,233,400	+		Psyr_2662	0.76	+1.0
3,233,400	+		Psyr_2662	0.76	-0.7
3,233,401	-		Psyr_2662	0.77	-1.1
3,233,469	-		Psyr_2662	0.89	+1.8
3,233,520	+				-0.5
3,233,520	+				+0.5
3,233,520	+				+0.2
3,233,520	+				+0.0
3,233,520	+				-0.9
3,233,520	+				+1.3
3,233,520	+				+1.4
3,233,520	+				+0.5
3,233,520	+				-1.5
3,233,521	-				-0.3
3,233,521	-				-2.7
3,233,521	-				-0.7
3,233,521	-				+0.9
3,233,521	-				+0.4
3,233,521	-				-0.1
3,233,521	-				+2.1
3,233,521	-				-0.6
3,233,522	+				+0.4
3,233,522	+				-2.3
3,233,523	-				+0.5
3,233,523	-				+0.5
3,233,523	-				-0.5
3,233,523	-				+0.1
3,233,523	-				-0.5
3,233,523	-				-0.2
3,233,622	+				-0.6
3,233,623	-				-0.2
3,233,640	+				+0.0
3,233,641	-				-0.6
3,233,641	-				-1.4
3,233,713	+				+1.6
3,233,714	-				+2.7
3,233,716	+				+1.1
3,233,716	+				-1.7
3,233,716	+				-0.9
3,233,716	+				-0.2
3,233,716	+				-0.3
3,233,717	-				+0.2
3,233,717	-				-0.3
3,233,717	-				+0.1
3,233,717	-				-0.2
3,233,717	-				-0.2
3,233,717	-				+0.3
3,233,722	+				+1.4
3,233,733	+				+0.3
3,233,733	+				-0.2
3,233,733	+				-0.4
3,233,733	+				-0.1
3,233,733	+				+0.7
3,233,763	-				+0.1
3,233,763	-				-0.2
3,233,763	-				+1.1
3,233,775	-				+0.5
3,233,797	+				+0.1
3,233,797	+				+0.3
3,233,814	+				-0.2
3,233,843	+				-1.1
3,233,843	+				-1.2
3,233,843	+				-0.5
3,233,843	+				+0.3
3,233,843	+				+1.4
3,233,843	+				-2.7
3,233,844	-				-0.7
3,233,847	+				-0.5
3,233,847	+				-0.3
3,233,847	+				+1.4
3,233,847	+				+0.3
3,233,847	+				-1.7
3,233,848	-				+0.8
3,233,848	-				+0.4
3,233,848	-				-1.0