Experiment: KB with Bergenin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_2593 and Psyr_2594 overlap by 4 nucleotides Psyr_2594 and Psyr_2595 overlap by 4 nucleotides Psyr_2595 and Psyr_2596 are separated by 156 nucleotides
Psyr_2593: Psyr_2593 - ABC transporter, at 3,039,718 to 3,040,509
_2593
Psyr_2594: Psyr_2594 - unknown conserved protein in bacilli, at 3,040,506 to 3,041,285
_2594
Psyr_2595: Psyr_2595 - Dimethylmenaquinone methyltransferase, at 3,041,282 to 3,041,926
_2595
Psyr_2596: Psyr_2596 - PAS, at 3,042,083 to 3,043,444
_2596
Position (kb)
3041
3042 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3040.867 kb on - strand, within Psyr_2594 at 3041.002 kb on + strand, within Psyr_2594 at 3041.010 kb on + strand, within Psyr_2594 at 3041.127 kb on + strand, within Psyr_2594 at 3041.215 kb on - strand at 3041.217 kb on + strand at 3041.340 kb on - strand at 3041.514 kb on + strand, within Psyr_2595 at 3041.515 kb on - strand, within Psyr_2595 at 3041.515 kb on - strand, within Psyr_2595 at 3041.515 kb on - strand, within Psyr_2595 at 3041.734 kb on + strand, within Psyr_2595 at 3041.736 kb on + strand, within Psyr_2595 at 3041.736 kb on + strand, within Psyr_2595 at 3041.736 kb on + strand, within Psyr_2595 at 3041.737 kb on - strand, within Psyr_2595 at 3041.737 kb on - strand, within Psyr_2595 at 3041.765 kb on - strand, within Psyr_2595 at 3041.790 kb on + strand, within Psyr_2595 at 3041.794 kb on + strand, within Psyr_2595 at 3041.795 kb on - strand, within Psyr_2595 at 3041.795 kb on - strand, within Psyr_2595 at 3041.991 kb on - strand at 3042.011 kb on - strand at 3042.046 kb on + strand at 3042.049 kb on + strand at 3042.157 kb on + strand at 3042.253 kb on - strand, within Psyr_2596 at 3042.253 kb on - strand, within Psyr_2596 at 3042.290 kb on + strand, within Psyr_2596 at 3042.291 kb on - strand, within Psyr_2596 at 3042.473 kb on - strand, within Psyr_2596 at 3042.688 kb on + strand, within Psyr_2596 at 3042.688 kb on + strand, within Psyr_2596 at 3042.688 kb on + strand, within Psyr_2596 at 3042.688 kb on + strand, within Psyr_2596 at 3042.689 kb on - strand, within Psyr_2596 at 3042.689 kb on - strand, within Psyr_2596 at 3042.689 kb on - strand, within Psyr_2596 at 3042.689 kb on - strand, within Psyr_2596 at 3042.689 kb on - strand, within Psyr_2596 at 3042.689 kb on - strand, within Psyr_2596 at 3042.728 kb on + strand, within Psyr_2596 at 3042.729 kb on - strand, within Psyr_2596 at 3042.729 kb on - strand, within Psyr_2596 at 3042.729 kb on - strand, within Psyr_2596 at 3042.729 kb on - strand, within Psyr_2596 at 3042.729 kb on - strand, within Psyr_2596 at 3042.729 kb on - strand, within Psyr_2596 at 3042.766 kb on + strand, within Psyr_2596 at 3042.810 kb on + strand, within Psyr_2596 at 3042.810 kb on + strand, within Psyr_2596 at 3042.810 kb on + strand, within Psyr_2596 at 3042.810 kb on + strand, within Psyr_2596 at 3042.810 kb on + strand, within Psyr_2596 at 3042.810 kb on + strand, within Psyr_2596 at 3042.810 kb on + strand, within Psyr_2596 at 3042.810 kb on + strand, within Psyr_2596 at 3042.810 kb on + strand, within Psyr_2596 at 3042.811 kb on - strand, within Psyr_2596 at 3042.811 kb on - strand, within Psyr_2596 at 3042.811 kb on - strand, within Psyr_2596 at 3042.811 kb on - strand, within Psyr_2596 at 3042.811 kb on - strand, within Psyr_2596 at 3042.811 kb on - strand, within Psyr_2596 at 3042.811 kb on - strand, within Psyr_2596 at 3042.811 kb on - strand, within Psyr_2596 at 3042.811 kb on - strand, within Psyr_2596 at 3042.862 kb on + strand, within Psyr_2596 at 3042.863 kb on - strand, within Psyr_2596
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Bergenin 10 mM remove 3,040,867 - Psyr_2594 0.46 +0.9 3,041,002 + Psyr_2594 0.64 -0.7 3,041,010 + Psyr_2594 0.65 +0.1 3,041,127 + Psyr_2594 0.80 +3.1 3,041,215 - +0.5 3,041,217 + +1.3 3,041,340 - +0.4 3,041,514 + Psyr_2595 0.36 +0.3 3,041,515 - Psyr_2595 0.36 +0.5 3,041,515 - Psyr_2595 0.36 -1.2 3,041,515 - Psyr_2595 0.36 +0.0 3,041,734 + Psyr_2595 0.70 -2.6 3,041,736 + Psyr_2595 0.70 -0.7 3,041,736 + Psyr_2595 0.70 -0.7 3,041,736 + Psyr_2595 0.70 -2.3 3,041,737 - Psyr_2595 0.71 +0.3 3,041,737 - Psyr_2595 0.71 +1.1 3,041,765 - Psyr_2595 0.75 -1.1 3,041,790 + Psyr_2595 0.79 -0.2 3,041,794 + Psyr_2595 0.79 -3.3 3,041,795 - Psyr_2595 0.80 -0.4 3,041,795 - Psyr_2595 0.80 -1.4 3,041,991 - -1.5 3,042,011 - -1.9 3,042,046 + +1.7 3,042,049 + +0.1 3,042,157 + +0.3 3,042,253 - Psyr_2596 0.12 -1.1 3,042,253 - Psyr_2596 0.12 -2.6 3,042,290 + Psyr_2596 0.15 -1.5 3,042,291 - Psyr_2596 0.15 +1.1 3,042,473 - Psyr_2596 0.29 +1.3 3,042,688 + Psyr_2596 0.44 -0.1 3,042,688 + Psyr_2596 0.44 -0.3 3,042,688 + Psyr_2596 0.44 -1.0 3,042,688 + Psyr_2596 0.44 -0.1 3,042,689 - Psyr_2596 0.44 +0.8 3,042,689 - Psyr_2596 0.44 +0.5 3,042,689 - Psyr_2596 0.44 +1.1 3,042,689 - Psyr_2596 0.44 -0.5 3,042,689 - Psyr_2596 0.44 +0.4 3,042,689 - Psyr_2596 0.44 -1.8 3,042,728 + Psyr_2596 0.47 -0.2 3,042,729 - Psyr_2596 0.47 +1.1 3,042,729 - Psyr_2596 0.47 -1.0 3,042,729 - Psyr_2596 0.47 -0.9 3,042,729 - Psyr_2596 0.47 -0.5 3,042,729 - Psyr_2596 0.47 -1.3 3,042,729 - Psyr_2596 0.47 +0.4 3,042,766 + Psyr_2596 0.50 +1.7 3,042,810 + Psyr_2596 0.53 -0.5 3,042,810 + Psyr_2596 0.53 -2.2 3,042,810 + Psyr_2596 0.53 -1.2 3,042,810 + Psyr_2596 0.53 -0.7 3,042,810 + Psyr_2596 0.53 +1.3 3,042,810 + Psyr_2596 0.53 +1.0 3,042,810 + Psyr_2596 0.53 +0.4 3,042,810 + Psyr_2596 0.53 -0.3 3,042,810 + Psyr_2596 0.53 -2.5 3,042,811 - Psyr_2596 0.53 -0.5 3,042,811 - Psyr_2596 0.53 -0.9 3,042,811 - Psyr_2596 0.53 -0.5 3,042,811 - Psyr_2596 0.53 +0.2 3,042,811 - Psyr_2596 0.53 +1.0 3,042,811 - Psyr_2596 0.53 +1.1 3,042,811 - Psyr_2596 0.53 +0.1 3,042,811 - Psyr_2596 0.53 -0.3 3,042,811 - Psyr_2596 0.53 -0.3 3,042,862 + Psyr_2596 0.57 +0.3 3,042,863 - Psyr_2596 0.57 +0.6
Or see this region's nucleotide sequence