Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1494

Experiment: KB with Bergenin 10 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Bergenin 10 mM
1,682,352	+		Psyr_1493	0.46	-0.6
1,682,359	+		Psyr_1493	0.46	-0.8
1,682,359	+		Psyr_1493	0.46	-0.6
1,682,359	+		Psyr_1493	0.46	-0.6
1,682,359	+		Psyr_1493	0.46	-0.8
1,682,359	+		Psyr_1493	0.46	-1.0
1,682,359	+		Psyr_1493	0.46	-0.5
1,682,360	-		Psyr_1493	0.46	+0.4
1,682,360	-		Psyr_1493	0.46	+0.4
1,682,360	-		Psyr_1493	0.46	+0.5
1,682,360	-		Psyr_1493	0.46	+0.2
1,682,360	-		Psyr_1493	0.46	+0.5
1,682,399	+		Psyr_1493	0.48	-0.3
1,682,417	-		Psyr_1493	0.49	+0.4
1,682,444	+		Psyr_1493	0.51	-0.5
1,682,444	+		Psyr_1493	0.51	-0.5
1,682,444	+		Psyr_1493	0.51	+0.0
1,682,444	+		Psyr_1493	0.51	-1.2
1,682,444	+		Psyr_1493	0.51	+0.3
1,682,445	-		Psyr_1493	0.51	+0.4
1,682,500	+		Psyr_1493	0.54	+0.2
1,682,501	-		Psyr_1493	0.54	-1.0
1,682,611	-		Psyr_1493	0.60	-1.1
1,682,622	+		Psyr_1493	0.61	-0.7
1,682,637	+		Psyr_1493	0.61	-0.5
1,682,638	-		Psyr_1493	0.61	+0.5
1,682,718	+		Psyr_1493	0.66	-0.0
1,682,718	+		Psyr_1493	0.66	-0.1
1,682,718	+		Psyr_1493	0.66	+0.8
1,682,718	+		Psyr_1493	0.66	-1.1
1,682,719	-		Psyr_1493	0.66	+1.1
1,682,719	-		Psyr_1493	0.66	+0.8
1,682,719	-		Psyr_1493	0.66	-1.2
1,682,719	-		Psyr_1493	0.66	-1.5
1,682,814	-		Psyr_1493	0.71	+0.4
1,682,814	-		Psyr_1493	0.71	-0.6
1,682,903	+		Psyr_1493	0.76	-0.1
1,682,904	-		Psyr_1493	0.76	-0.1
1,682,913	+		Psyr_1493	0.77	+0.4
1,682,916	+		Psyr_1493	0.77	+0.4
1,682,916	+		Psyr_1493	0.77	+0.1
1,682,938	+		Psyr_1493	0.78	-0.7
1,682,938	+		Psyr_1493	0.78	-1.6
1,682,938	+		Psyr_1493	0.78	+0.3
1,682,938	+		Psyr_1493	0.78	-0.5
1,682,938	+		Psyr_1493	0.78	+0.6
1,682,938	+		Psyr_1493	0.78	+0.3
1,682,939	-		Psyr_1493	0.78	-0.3
1,682,939	-		Psyr_1493	0.78	-0.1
1,682,950	-		Psyr_1493	0.79	+0.4
1,682,950	-		Psyr_1493	0.79	-0.2
1,682,950	-		Psyr_1493	0.79	+0.5
1,682,950	-		Psyr_1493	0.79	-1.5
1,683,085	+		Psyr_1493	0.86	+0.0
1,683,275	-				-0.1
1,683,293	-				-0.9
1,683,309	+				+0.1
1,683,309	+				+0.5
1,683,309	+				-0.6
1,683,309	+				+0.8
1,683,309	+				-0.1
1,683,310	-				-1.5
1,683,310	-				+0.1
1,683,310	-				+0.5
1,683,310	-				-2.1
1,683,503	+		Psyr_1494	0.17	+1.2
1,683,566	+		Psyr_1494	0.24	+0.8
1,683,584	+		Psyr_1494	0.25	+1.1
1,683,585	-		Psyr_1494	0.26	-0.5
1,683,662	+		Psyr_1494	0.34	+0.7
1,683,662	+		Psyr_1494	0.34	-0.3
1,683,662	+		Psyr_1494	0.34	+0.1
1,683,663	-		Psyr_1494	0.34	+1.0
1,683,666	+		Psyr_1494	0.34	+1.6
1,683,666	+		Psyr_1494	0.34	+4.7
1,683,666	+		Psyr_1494	0.34	-0.0
1,683,666	+		Psyr_1494	0.34	+1.1
1,683,666	+		Psyr_1494	0.34	-0.1
1,683,666	+		Psyr_1494	0.34	+0.8
1,683,666	+		Psyr_1494	0.34	+0.1
1,683,666	+		Psyr_1494	0.34	+0.3
1,683,667	-		Psyr_1494	0.34	+0.5
1,683,667	-		Psyr_1494	0.34	+1.1
1,683,667	-		Psyr_1494	0.34	+0.5
1,683,667	-		Psyr_1494	0.34	+0.2
1,683,792	-		Psyr_1494	0.48	+0.5
1,683,792	-		Psyr_1494	0.48	-0.9
1,683,792	-		Psyr_1494	0.48	-0.5
1,683,942	+		Psyr_1494	0.64	-1.2
1,683,942	+		Psyr_1494	0.64	-0.9
1,683,942	+		Psyr_1494	0.64	+0.0
1,683,942	+		Psyr_1494	0.64	+0.3
1,683,942	+		Psyr_1494	0.64	-1.9
1,683,942	+		Psyr_1494	0.64	-0.6
1,683,942	+		Psyr_1494	0.64	+0.6
1,683,942	+		Psyr_1494	0.64	-0.5
1,683,942	+		Psyr_1494	0.64	-1.3
1,683,942	+		Psyr_1494	0.64	-1.2
1,683,943	-		Psyr_1494	0.64	+0.6
1,683,943	-		Psyr_1494	0.64	-0.0
1,683,943	-		Psyr_1494	0.64	+0.0
1,683,943	-		Psyr_1494	0.64	+0.5
1,684,014	+		Psyr_1494	0.71	+1.8
1,684,015	-		Psyr_1494	0.71	-0.3
1,684,027	+		Psyr_1494	0.73	+0.8
1,684,170	+		Psyr_1494	0.88	+1.1
1,684,170	+		Psyr_1494	0.88	+0.7
1,684,171	-		Psyr_1494	0.88	+0.4
1,684,171	-		Psyr_1494	0.88	-0.5
1,684,202	+				+0.7
1,684,202	+				-0.1
1,684,202	+				-0.5
1,684,202	+				+1.1
1,684,205	+				-1.0
1,684,205	+				-2.1
1,684,205	+				+1.1
1,684,205	+				+0.5
1,684,205	+				+1.1
1,684,206	-				-0.4
1,684,206	-				+0.8
1,684,206	-				+1.4
1,684,206	-				-0.1
1,684,206	-				+0.3
1,684,206	-				-1.5
1,684,256	-				-0.1
1,684,271	+				+0.3
1,684,271	+				+0.1
1,684,271	+				-0.8
1,684,271	+				-0.1
1,684,271	+				-0.4
1,684,271	+				+0.3
1,684,271	+				+0.1
1,684,271	+				+0.4
1,684,271	+				+1.2
1,684,271	+				+0.5
1,684,272	-				-1.6
1,684,272	-				+0.8
1,684,272	-				+0.6
1,684,272	-				-0.1
1,684,272	-				-0.7
1,684,272	-				+0.3
1,684,272	-				-1.1
1,684,272	-				+0.1
1,684,272	-				+2.3
1,684,272	-				+0.1
1,684,309	-				+0.6
1,684,336	+				-0.7
1,684,337	-				-0.4
1,684,621	-		Psyr_1495	0.72	+0.3
1,684,654	+		Psyr_1495	0.80	+1.6
1,684,654	+		Psyr_1495	0.80	+0.1
1,684,654	+		Psyr_1495	0.80	-0.5
1,684,654	+		Psyr_1495	0.80	-0.3
1,684,654	+		Psyr_1495	0.80	+0.0
1,684,654	+		Psyr_1495	0.80	+0.2
1,684,654	+		Psyr_1495	0.80	-0.4
1,684,654	+		Psyr_1495	0.80	+0.2
1,684,654	+		Psyr_1495	0.80	+0.0
1,684,655	-		Psyr_1495	0.81	-0.5
1,684,655	-		Psyr_1495	0.81	+0.5
1,684,655	-		Psyr_1495	0.81	+1.1
1,684,655	-		Psyr_1495	0.81	+0.6
1,684,655	-		Psyr_1495	0.81	+0.2
1,684,655	-		Psyr_1495	0.81	+0.3
1,684,726	+				+1.0
1,684,726	+				+0.9
1,684,727	-				+0.8
1,684,727	-				-0.8
1,684,727	-				-0.3
1,684,727	-				-0.0
1,684,727	-				-0.9
1,684,727	-				+1.1
1,684,727	-				+0.1
1,684,770	+				+0.3
1,684,770	+				+0.2
1,684,771	-				-0.3
1,684,771	-				-0.1
1,684,771	-				+1.8
1,684,771	-				+1.1
1,684,815	+				+0.4
1,684,823	-				-0.2
1,685,027	+		Psyr_1496	0.32	-0.0
1,685,081	+		Psyr_1496	0.38	-0.1
1,685,081	+		Psyr_1496	0.38	+0.3
1,685,081	+		Psyr_1496	0.38	+0.9
1,685,081	+		Psyr_1496	0.38	+0.3
1,685,082	-		Psyr_1496	0.38	-1.1
1,685,082	-		Psyr_1496	0.38	-0.5
1,685,082	-		Psyr_1496	0.38	+0.4
1,685,111	-		Psyr_1496	0.41	+0.7
1,685,111	-		Psyr_1496	0.41	-0.7
1,685,260	+		Psyr_1496	0.57	-0.8
1,685,261	-		Psyr_1496	0.57	-1.2