Experiment: KB with Bergenin 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0054 and Psyr_0055 are separated by 216 nucleotides Psyr_0055 and Psyr_0056 are separated by 77 nucleotides Psyr_0056 and Psyr_0057 overlap by 10 nucleotides Psyr_0057 and Psyr_0058 are separated by 4 nucleotides
Psyr_0054: Psyr_0054 - alginate regulatory protein AlgR3, at 54,905 to 55,921
_0054
Psyr_0055: Psyr_0055 - FKBP-type peptidyl-prolyl isomerase, N-terminal:Peptidylprolyl isomerase, FKBP-type, at 56,138 to 56,815
_0055
Psyr_0056: Psyr_0056 - Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ, at 56,893 to 57,393
_0056
Psyr_0057: Psyr_0057 - conserved hypothetical protein, at 57,384 to 57,536
_0057
Psyr_0058: Psyr_0058 - Disulfide bond formation protein DsbB, at 57,541 to 58,068
_0058
Position (kb) 56
57 Strain fitness (log2 ratio) -2
-1
0
1
2 at 55.240 kb on + strand, within Psyr_0054 at 55.241 kb on - strand, within Psyr_0054 at 55.438 kb on + strand, within Psyr_0054 at 55.529 kb on - strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.620 kb on + strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.621 kb on - strand, within Psyr_0054 at 55.894 kb on + strand at 55.894 kb on + strand at 55.894 kb on + strand at 55.895 kb on - strand at 55.895 kb on - strand at 55.895 kb on - strand at 55.895 kb on - strand at 55.899 kb on - strand at 55.899 kb on - strand at 55.926 kb on + strand at 55.926 kb on + strand at 55.926 kb on + strand at 55.926 kb on + strand at 55.926 kb on + strand at 55.927 kb on - strand at 55.927 kb on - strand at 55.927 kb on - strand at 55.927 kb on - strand at 55.955 kb on + strand at 55.955 kb on + strand at 55.955 kb on + strand at 55.955 kb on + strand at 55.955 kb on + strand at 55.955 kb on + strand at 55.955 kb on + strand at 55.955 kb on + strand at 55.955 kb on + strand at 55.956 kb on - strand at 55.956 kb on - strand at 55.956 kb on - strand at 55.956 kb on - strand at 55.956 kb on - strand at 55.956 kb on - strand at 55.958 kb on + strand at 55.958 kb on + strand at 55.958 kb on + strand at 55.958 kb on + strand at 55.958 kb on + strand at 55.959 kb on - strand at 55.959 kb on - strand at 56.019 kb on - strand at 56.137 kb on - strand at 56.137 kb on - strand at 56.148 kb on - strand at 56.304 kb on + strand, within Psyr_0055 at 56.305 kb on - strand, within Psyr_0055 at 56.579 kb on + strand, within Psyr_0055 at 56.580 kb on - strand, within Psyr_0055 at 56.580 kb on - strand, within Psyr_0055 at 56.580 kb on - strand, within Psyr_0055 at 56.732 kb on + strand, within Psyr_0055 at 56.732 kb on + strand, within Psyr_0055 at 56.732 kb on + strand, within Psyr_0055 at 56.733 kb on - strand, within Psyr_0055 at 56.771 kb on - strand at 56.782 kb on - strand at 56.782 kb on - strand at 56.813 kb on + strand at 56.813 kb on + strand at 56.813 kb on + strand at 56.814 kb on - strand at 56.814 kb on - strand at 56.814 kb on - strand at 56.856 kb on + strand at 56.856 kb on + strand at 56.856 kb on + strand at 56.856 kb on + strand at 56.857 kb on - strand at 56.857 kb on - strand at 56.857 kb on - strand at 56.857 kb on - strand at 56.873 kb on + strand at 56.873 kb on + strand at 56.873 kb on + strand at 56.873 kb on + strand at 56.874 kb on - strand at 56.874 kb on - strand at 56.874 kb on - strand at 56.928 kb on + strand at 56.928 kb on + strand at 56.929 kb on - strand at 57.092 kb on + strand, within Psyr_0056 at 57.161 kb on + strand, within Psyr_0056 at 57.161 kb on + strand, within Psyr_0056 at 57.161 kb on + strand, within Psyr_0056 at 57.188 kb on + strand, within Psyr_0056 at 57.188 kb on + strand, within Psyr_0056 at 57.188 kb on + strand, within Psyr_0056 at 57.188 kb on + strand, within Psyr_0056 at 57.188 kb on + strand, within Psyr_0056 at 57.188 kb on + strand, within Psyr_0056 at 57.188 kb on + strand, within Psyr_0056 at 57.189 kb on - strand, within Psyr_0056 at 57.189 kb on - strand, within Psyr_0056 at 57.189 kb on - strand, within Psyr_0056 at 57.189 kb on - strand, within Psyr_0056 at 57.189 kb on - strand, within Psyr_0056 at 57.269 kb on + strand, within Psyr_0056 at 57.269 kb on + strand, within Psyr_0056 at 57.270 kb on - strand, within Psyr_0056 at 57.270 kb on - strand, within Psyr_0056 at 57.416 kb on - strand, within Psyr_0057 at 57.416 kb on - strand, within Psyr_0057 at 57.416 kb on - strand, within Psyr_0057 at 57.416 kb on - strand, within Psyr_0057 at 57.416 kb on - strand, within Psyr_0057 at 57.438 kb on + strand, within Psyr_0057 at 57.439 kb on - strand, within Psyr_0057 at 57.439 kb on - strand, within Psyr_0057 at 57.439 kb on - strand, within Psyr_0057 at 57.439 kb on - strand, within Psyr_0057 at 57.457 kb on + strand, within Psyr_0057 at 57.457 kb on + strand, within Psyr_0057 at 57.457 kb on + strand, within Psyr_0057 at 57.457 kb on + strand, within Psyr_0057 at 57.457 kb on + strand, within Psyr_0057 at 57.457 kb on + strand, within Psyr_0057 at 57.457 kb on + strand, within Psyr_0057 at 57.457 kb on + strand, within Psyr_0057 at 57.457 kb on + strand, within Psyr_0057 at 57.458 kb on - strand, within Psyr_0057 at 57.458 kb on - strand, within Psyr_0057 at 57.458 kb on - strand, within Psyr_0057 at 57.458 kb on - strand, within Psyr_0057 at 57.485 kb on + strand, within Psyr_0057 at 57.485 kb on + strand, within Psyr_0057 at 57.512 kb on + strand, within Psyr_0057 at 57.513 kb on - strand, within Psyr_0057 at 57.513 kb on - strand, within Psyr_0057 at 57.523 kb on + strand at 57.523 kb on + strand at 57.523 kb on + strand at 57.532 kb on + strand at 57.532 kb on + strand at 57.533 kb on - strand at 57.533 kb on - strand at 57.533 kb on - strand at 57.533 kb on - strand at 57.533 kb on - strand at 57.533 kb on - strand at 57.624 kb on + strand, within Psyr_0058 at 57.624 kb on + strand, within Psyr_0058 at 57.625 kb on - strand, within Psyr_0058 at 57.625 kb on - strand, within Psyr_0058 at 57.625 kb on - strand, within Psyr_0058 at 57.625 kb on - strand, within Psyr_0058 at 57.625 kb on - strand, within Psyr_0058 at 57.625 kb on - strand, within Psyr_0058 at 57.625 kb on - strand, within Psyr_0058 at 57.625 kb on - strand, within Psyr_0058 at 57.658 kb on - strand, within Psyr_0058 at 57.723 kb on + strand, within Psyr_0058 at 57.723 kb on + strand, within Psyr_0058 at 57.723 kb on + strand, within Psyr_0058 at 57.724 kb on - strand, within Psyr_0058 at 57.724 kb on - strand, within Psyr_0058 at 57.724 kb on - strand, within Psyr_0058 at 57.746 kb on - strand, within Psyr_0058 at 57.746 kb on - strand, within Psyr_0058
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Bergenin 10 mM remove 55,240 + Psyr_0054 0.33 -0.6 55,241 - Psyr_0054 0.33 -0.2 55,438 + Psyr_0054 0.52 -0.7 55,529 - Psyr_0054 0.61 -0.4 55,620 + Psyr_0054 0.70 -0.8 55,620 + Psyr_0054 0.70 -0.4 55,620 + Psyr_0054 0.70 -1.0 55,620 + Psyr_0054 0.70 +0.5 55,620 + Psyr_0054 0.70 -2.0 55,620 + Psyr_0054 0.70 -1.2 55,620 + Psyr_0054 0.70 -0.6 55,620 + Psyr_0054 0.70 +1.0 55,620 + Psyr_0054 0.70 -0.3 55,620 + Psyr_0054 0.70 -0.3 55,620 + Psyr_0054 0.70 -0.4 55,620 + Psyr_0054 0.70 -0.9 55,620 + Psyr_0054 0.70 +0.9 55,621 - Psyr_0054 0.70 -0.6 55,621 - Psyr_0054 0.70 +0.8 55,621 - Psyr_0054 0.70 -0.5 55,621 - Psyr_0054 0.70 +0.9 55,621 - Psyr_0054 0.70 -0.9 55,621 - Psyr_0054 0.70 -0.4 55,621 - Psyr_0054 0.70 -0.8 55,621 - Psyr_0054 0.70 -0.7 55,621 - Psyr_0054 0.70 -0.0 55,621 - Psyr_0054 0.70 -0.1 55,621 - Psyr_0054 0.70 -0.0 55,621 - Psyr_0054 0.70 -0.9 55,621 - Psyr_0054 0.70 -1.2 55,621 - Psyr_0054 0.70 +0.6 55,894 + +0.1 55,894 + -1.2 55,894 + -0.5 55,895 - -0.3 55,895 - +1.3 55,895 - -1.2 55,895 - -0.4 55,899 - -0.4 55,899 - -0.2 55,926 + -0.9 55,926 + -1.2 55,926 + -0.6 55,926 + -1.5 55,926 + +0.4 55,927 - -0.8 55,927 - -0.6 55,927 - -1.0 55,927 - +0.7 55,955 + +0.2 55,955 + -0.7 55,955 + -0.6 55,955 + -0.3 55,955 + -0.7 55,955 + -1.0 55,955 + -0.4 55,955 + -0.7 55,955 + +1.3 55,956 - -1.4 55,956 - +0.3 55,956 - +0.5 55,956 - +0.3 55,956 - +0.6 55,956 - +0.9 55,958 + -0.5 55,958 + +0.3 55,958 + -0.1 55,958 + +0.3 55,958 + -2.2 55,959 - -1.0 55,959 - -1.9 56,019 - +0.7 56,137 - +0.3 56,137 - -0.5 56,148 - +0.3 56,304 + Psyr_0055 0.24 -0.5 56,305 - Psyr_0055 0.25 -0.5 56,579 + Psyr_0055 0.65 -0.5 56,580 - Psyr_0055 0.65 -0.1 56,580 - Psyr_0055 0.65 -1.0 56,580 - Psyr_0055 0.65 -0.8 56,732 + Psyr_0055 0.88 -0.0 56,732 + Psyr_0055 0.88 -1.1 56,732 + Psyr_0055 0.88 -0.8 56,733 - Psyr_0055 0.88 +0.4 56,771 - -1.3 56,782 - +0.9 56,782 - +0.4 56,813 + -0.6 56,813 + -1.3 56,813 + -0.7 56,814 - +0.1 56,814 - -0.3 56,814 - +0.3 56,856 + +0.4 56,856 + +0.1 56,856 + -0.9 56,856 + -0.1 56,857 - +0.3 56,857 - +0.2 56,857 - +0.0 56,857 - -1.0 56,873 + -0.6 56,873 + +0.6 56,873 + +0.4 56,873 + -0.8 56,874 - +0.1 56,874 - +0.2 56,874 - -0.7 56,928 + -1.2 56,928 + +0.4 56,929 - -0.9 57,092 + Psyr_0056 0.40 -0.2 57,161 + Psyr_0056 0.53 -1.1 57,161 + Psyr_0056 0.53 +0.7 57,161 + Psyr_0056 0.53 -0.3 57,188 + Psyr_0056 0.59 -2.5 57,188 + Psyr_0056 0.59 -0.4 57,188 + Psyr_0056 0.59 -0.5 57,188 + Psyr_0056 0.59 +0.1 57,188 + Psyr_0056 0.59 -0.3 57,188 + Psyr_0056 0.59 -0.6 57,188 + Psyr_0056 0.59 -0.1 57,189 - Psyr_0056 0.59 -0.1 57,189 - Psyr_0056 0.59 +0.0 57,189 - Psyr_0056 0.59 -1.5 57,189 - Psyr_0056 0.59 -1.1 57,189 - Psyr_0056 0.59 -0.5 57,269 + Psyr_0056 0.75 -0.5 57,269 + Psyr_0056 0.75 +0.2 57,270 - Psyr_0056 0.75 +0.7 57,270 - Psyr_0056 0.75 -0.4 57,416 - Psyr_0057 0.21 +0.3 57,416 - Psyr_0057 0.21 +1.6 57,416 - Psyr_0057 0.21 -0.8 57,416 - Psyr_0057 0.21 -2.0 57,416 - Psyr_0057 0.21 -1.2 57,438 + Psyr_0057 0.35 +0.7 57,439 - Psyr_0057 0.36 -0.1 57,439 - Psyr_0057 0.36 -0.6 57,439 - Psyr_0057 0.36 +0.5 57,439 - Psyr_0057 0.36 -0.1 57,457 + Psyr_0057 0.48 +1.1 57,457 + Psyr_0057 0.48 -0.2 57,457 + Psyr_0057 0.48 -0.5 57,457 + Psyr_0057 0.48 +0.6 57,457 + Psyr_0057 0.48 +0.9 57,457 + Psyr_0057 0.48 -0.2 57,457 + Psyr_0057 0.48 +0.5 57,457 + Psyr_0057 0.48 -0.1 57,457 + Psyr_0057 0.48 -0.5 57,458 - Psyr_0057 0.48 -0.3 57,458 - Psyr_0057 0.48 +0.2 57,458 - Psyr_0057 0.48 -0.5 57,458 - Psyr_0057 0.48 -0.2 57,485 + Psyr_0057 0.66 -0.8 57,485 + Psyr_0057 0.66 -0.2 57,512 + Psyr_0057 0.84 -0.2 57,513 - Psyr_0057 0.84 -0.2 57,513 - Psyr_0057 0.84 +0.5 57,523 + +0.5 57,523 + +2.1 57,523 + -0.8 57,532 + +1.0 57,532 + -0.3 57,533 - +1.1 57,533 - +0.9 57,533 - +0.8 57,533 - -0.2 57,533 - +0.2 57,533 - -0.2 57,624 + Psyr_0058 0.16 -0.2 57,624 + Psyr_0058 0.16 -0.1 57,625 - Psyr_0058 0.16 -0.3 57,625 - Psyr_0058 0.16 -0.1 57,625 - Psyr_0058 0.16 -0.0 57,625 - Psyr_0058 0.16 -0.3 57,625 - Psyr_0058 0.16 +1.5 57,625 - Psyr_0058 0.16 +0.9 57,625 - Psyr_0058 0.16 -0.5 57,625 - Psyr_0058 0.16 -0.0 57,658 - Psyr_0058 0.22 +0.3 57,723 + Psyr_0058 0.34 -0.2 57,723 + Psyr_0058 0.34 +0.6 57,723 + Psyr_0058 0.34 +0.3 57,724 - Psyr_0058 0.35 -0.3 57,724 - Psyr_0058 0.35 +0.4 57,724 - Psyr_0058 0.35 +0.9 57,746 - Psyr_0058 0.39 +1.3 57,746 - Psyr_0058 0.39 +0.4
Or see this region's nucleotide sequence